mRNA_F-serratus_M_contig1141.1231.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1141.1231.1
Unique NamemRNA_F-serratus_M_contig1141.1231.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1141.1231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1141contigF-serratus_M_contig1141:269378..273031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2739
Cds size2121
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1141.1231.1prot_F-serratus_M_contig1141.1231.1Fucus serratus malepolypeptideF-serratus_M_contig1141 269751..272786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929045.056283-UTR-F-serratus_M_contig1141:269377..2697501622929045.056283-UTR-F-serratus_M_contig1141:269377..269750Fucus serratus maleUTRF-serratus_M_contig1141 269378..269750 -
1690962679.8292656-UTR-F-serratus_M_contig1141:269377..2697501690962679.8292656-UTR-F-serratus_M_contig1141:269377..269750Fucus serratus maleUTRF-serratus_M_contig1141 269378..269750 -
1622929045.0931978-UTR-F-serratus_M_contig1141:272786..2730311622929045.0931978-UTR-F-serratus_M_contig1141:272786..273031Fucus serratus maleUTRF-serratus_M_contig1141 272787..273031 -
1690962679.8611171-UTR-F-serratus_M_contig1141:272786..2730311690962679.8611171-UTR-F-serratus_M_contig1141:272786..273031Fucus serratus maleUTRF-serratus_M_contig1141 272787..273031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929045.0676134-CDS-F-serratus_M_contig1141:269750..2699051622929045.0676134-CDS-F-serratus_M_contig1141:269750..269905Fucus serratus maleCDSF-serratus_M_contig1141 269751..269905 -
1690962679.840551-CDS-F-serratus_M_contig1141:269750..2699051690962679.840551-CDS-F-serratus_M_contig1141:269750..269905Fucus serratus maleCDSF-serratus_M_contig1141 269751..269905 -
1622929045.0819738-CDS-F-serratus_M_contig1141:270820..2727861622929045.0819738-CDS-F-serratus_M_contig1141:270820..272786Fucus serratus maleCDSF-serratus_M_contig1141 270821..272786 -
1690962679.8504462-CDS-F-serratus_M_contig1141:270820..2727861690962679.8504462-CDS-F-serratus_M_contig1141:270820..272786Fucus serratus maleCDSF-serratus_M_contig1141 270821..272786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1141.1231.1

>prot_F-serratus_M_contig1141.1231.1 ID=prot_F-serratus_M_contig1141.1231.1|Name=mRNA_F-serratus_M_contig1141.1231.1|organism=Fucus serratus male|type=polypeptide|length=707bp
MSRVPRSPTLPSDDNALLNSPGAASLAVAAHASPSTTALSTPHRQQFSIR
PSSTGPNFSNLLSEIDRADAAKTSSDRSPPLTDRASRYLRRDTLRTARTP
NTGMPCPDEYTSLYEFGKTKIEIHAPKHDRLPVTTPLKPIYGERNATTCH
AAAPRTLRPPFSAHGLFSSRDFPPLAPSRAPSNMDAPTTARSSLNSTAPT
TARSLNSTAAAPTVNATSADTSPVAVRMISGSGDSRHPGLRPVGPIPTRT
SLDLTAPPPHLDHLSLAWDSMSRTTREELHAISLLQVTQGFELSRARRLA
AADAERQRALEPLLTRAAVLEASDDATRRGILEHDAAAIVAHRTASTHEG
KSLELRTRAKLESAQQTAVQDDMTAVHLHYDSLIAEITNGDPRSPPSQPP
RTSSPPAVFIAPPTAAHDPAPTDTDDRAAAMPSRSAQPRTSDTAHHAAAP
ETAPSAASSKKPLPPVPTFAEAAAASPADEEKWTRVNYGKDHRSTPRDPY
LGLRISKLKFHNPSFPLGLRAPIKDLATSVNNALFDPANKRPILKDALRQ
ATKDDSPFSAKIIRDILHLCDLIRECSHTPAGARWIADTLQSAAPDAAPL
ATLHNPRLQAATPPPPDIAAGRTLPAGGEMQKGRPSLETPTATALGAQPK
IAVTIGEDKLRIQRTGRLQGSSRRLRGFFRSGATWSRARDAAEVRRSHGD
SLFFVP*
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mRNA from alignment at F-serratus_M_contig1141:269378..273031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1141.1231.1 ID=mRNA_F-serratus_M_contig1141.1231.1|Name=mRNA_F-serratus_M_contig1141.1231.1|organism=Fucus serratus male|type=mRNA|length=3654bp|location=Sequence derived from alignment at F-serratus_M_contig1141:269378..273031- (Fucus serratus male)
TTCCGTTCGCAAGCAATTAAAGAAAAGGTTCACCGTGCACGTCCAAGAGA
CTTCCCTGGCATCACTACAACGAGGAAGGCTTCGAGATCAATTACGCGTG
AGTTATTCCCTGTTCAGATCTACTCGAGCCGCTCATTATAATATATTGGC
GTCTAGACTTTTCCTCCCTCGTCCGACTGGCTGCCAGCTCTGCACAAGGC
AAATTTTGGGAATTCCGTAGCACGCGAGTACAAGCCGTTGCGATTATGTC
TCGCGTTCCCCGTTCACCTACCTTGCCTTCCGATGACAACGCCCTCCTTA
ATTCGCCTGGTGCCGCTTCCCTTGCCGTAGCCGCCCACGCATCTCCCTCC
ACTACTGCCCTAAGCACTCCCCACAGACAGCAGTTTTCGATCCGCCCTTC
GAGTACGGGCCCAAATTTTTCGAATCTATTGTCCGAAATTGACAGAGCCG
ATGCCGCCAAAACTTCGTCAGACCGTAGCCCCCCCTTGACTGATCGTGCA
TCCCGATACCTGCGCCGAGACACTTTACGCACGGCTCGTACCCCAAACAC
TGGCATGCCTTGCCCTGATGAGTACACGAGCTTGTACGAATTCGGAAAAA
CCAAAATTGAGATTCACGCGCCTAAACACGACCGTTTACCGGTAACTACC
CCACTGAAACCAATATATGGCGAACGGAACGCAACCACTTGCCATGCTGC
TGCACCCCGAACATTGCGCCCTCCCTTTTCGGCCCACGGTCTGTTCTCCT
CGCGCGACTTTCCCCCACTTGCCCCTTCACGAGCCCCTTCCAATATGGAC
GCTCCCACTACGGCCCGCTCCTCCCTCAACTCTACTGCGCCCACTACAGC
TCGCTCCCTAAACTCTACTGCGGCTGCTCCGACGGTCAACGCCACGTCGG
CCGACACTTCGCCGGTGGCCGTCAGAATGATCTCCGGCTCAGGGGACTCC
CGCCACCCCGGACTACGCCCGGTTGGCCCCATTCCCACGAGGACATCGTT
AGACCTCACGGCGCCACCTCCTCACCTGGACCATCTGTCGCTAGCATGGG
ACTCCATGTCCCGGACGACAAGAGAGGAACTTCACGCCATCTCCCTGCTC
CAAGTCACCCAAGGCTTCGAGCTCTCCCGTGCCAGAAGACTCGCCGCAGC
AGACGCGGAACGCCAGCGCGCCCTGGAACCCCTTCTCACACGGGCTGCCG
TCCTGGAAGCTTCTGACGACGCCACGCGCCGTGGGATCCTCGAGCACGAC
GCCGCCGCCATTGTTGCGCACCGCACGGCGTCGACCCATGAGGGCAAGTC
CCTCGAATTGCGGACGCGCGCCAAATTGGAATCCGCGCAACAGACCGCCG
TCCAGGACGACATGACGGCCGTCCACTTGCATTATGATTCGTTGATCGCG
GAGATCACCAATGGGGACCCCCGGTCGCCGCCCTCCCAGCCGCCCCGGAC
ATCATCCCCTCCGGCGGTTTTCATCGCCCCCCCTACCGCCGCCCATGATC
CCGCGCCAACCGACACGGACGACCGTGCCGCAGCCATGCCGTCCCGCTCC
GCCCAGCCGCGTACCTCCGACACGGCCCACCACGCAGCCGCCCCTGAGAC
GGCACCATCTGCCGCCTCCTCGAAGAAGCCATTGCCGCCGGTACCCACCT
TCGCAGAAGCCGCAGCTGCCTCCCCCGCCGACGAAGAGAAGTGGACTCGG
GTCAACTACGGCAAAGACCACCGATCGACCCCCCGCGACCCCTATCTTGG
CCTACGAATTTCGAAACTTAAGTTTCACAACCCGTCCTTTCCCCTTGGCC
TCCGCGCCCCCATCAAGGACCTCGCGACATCGGTCAACAACGCCCTGTTC
GACCCGGCCAACAAGAGACCCATCTTAAAAGATGCCCTCCGCCAAGCTAC
AAAGGACGACTCCCCTTTTTCCGCTAAGATCATAAGGGACATCCTACATC
TCTGTGACCTCATCCGAGAGTGCTCCCACACCCCGGCCGGCGCGCGCTGG
ATCGCAGATACCCTGCAGTCGGCCGCTCCCGACGCGGCCCCCCTCGCTAC
ACTCCACAATCCGCGTCTTCAGGCAGCGACTCCGCCGCCCCCGGACATCG
CCGCAGGGAGGACCCTGCCAGCGGGCGGGGAAATGCAAAAAGGACGACCT
TCGCTGGAGACTCCGACAGCGACCGCTCTCGGCGCCCAACCCAAGATCGC
CGTGACTATAGGCAAGTAATTCCGAGCGCGCCCCCTAATTTACAGCATCT
GTCTGACACGATTTCGGCCGCAACAATAGCTGCCGTCGATCGTCACCTTG
CGCAATTGGGCCTCTACCCAAGTTCGGACCCCGCGGCAATAGCCCCTATA
GTCCCCCCATCAGTACCGTACACTGCCACGGGCCCCGCTATACCGTACTC
TGCGGCGACCTCAGGTCACGTACAGTACAATGCGATAGCCCCTGTAGCCC
CCCCTTCTGGACAATCGGGTGCTGTGACCTCAGTCACTCCCCCCCCCACG
TACAGTACTCCGCCGCGATTCCCAGTAGTGTACAGTATCCCGCTGCAACA
TCCAGTGGTGTACAGTATCCCGCTGCAACATCCAGTGGTGTACAGTATCC
CGCTGCAACATCCAGTGGTGTACAGTATCCCGCTGCAACATCCAGTAGTG
TACAGTACCGTACTACGGCGCCCCCCCACGTGCAGCCCCCTTTAACGGCT
CCCGCACCAGCAGCCCCCATTTTTGACGGCCCCCCAGCAGATGAGCGTCT
TTTATATGATGATAGCTCCTCCCAAACCTCACACCCATCGAGTTCCTCTG
GTCCCCGCCCGGATTTTGTCGCCAATGTACAAGCCGCGTACCGTACCTTA
GACATGCGCCGAGTTCCCCGTGTACAACCGCTACAATTTCTCCCTTCCGC
GGACCGGTCTGCAGCAACACAATTGTTGATCCGCTCTATACGCGATGCTC
TCTCTGGAATTTTTGACGTTTCCGATCCTTCTGGGACGGTCACGCTGAAC
TCCCCCATCTGGATCCCTGGGTGGCACGCGCCACTTCTTAAACTCGTCAA
GGCCTCCATTCACGGTAACCGCGACGATACCCATGACCTGCACCGTCTCG
TCGATGACCTCTTTTCGCAATTGCAGGAGAGGATAAGCTCCGGATCCAGC
GGACCGGACGCCTTCAGGGTTCTTCTCGCAGACTTCGGGGATTTTTTCGA
TCGGGCGCCACGTGGAGCCGCGCTCGAGACGCTGCAGAAGTTCGGCGTTC
GCACGGGGACTCCCTTTTCTTCGTACCTTAGAGCTTTGAGAGTAGTGGTA
GCCAGCACTGTAGAGAAAGGCGGCCCCTTGGCCCCCTCTCCGACGATGGC
TATAGAACTAGTAAGGATACGGACGGCCCAGCAGTATCCTACGCTGATGC
CGACCCTGTTCCCGGGTGACCTAGCGAGTAGAGAGAAGCCGTACGCTTCA
TTAGCTTCGATGTGGACGGCTTTTGCCGATCTGAAACACAATACTTCACC
TGCCATTAATGGCGACGCTTTTTCTTCCGCACACCAGGTCCAACGACCTT
CTGTTGCTTCTTCTGCAACTGCCCCAGCCGCTTCCGCCGCTGGATCACAA
CGTTATAATACTCGTCCTGCACGATCATCGCACACAGTGTCGAATGTAGA
CCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1141:269378..273031-

>mRNA_F-serratus_M_contig1141.1231.1 ID=mRNA_F-serratus_M_contig1141.1231.1|Name=mRNA_F-serratus_M_contig1141.1231.1|organism=Fucus serratus male|type=CDS|length=4242bp|location=Sequence derived from alignment at F-serratus_M_contig1141:269378..273031- (Fucus serratus male)
ATGTCTCGCGTTCCCCGTTCACCTACCTTGCCTTCCGATGACAACGCCCT
CCTTAATTCGCCTGGTGCCGCTTCCCTTGCCGTAGCCGCCCACGCATCTC
CCTCCACTACTGCCCTAAGCACTCCCCACAGACAGCAGTTTTCGATCCGC
CCTTCGAGTACGGGCCCAAATTTTTCGAATCTATTGTCCGAAATTGACAG
AGCCGATGCCGCCAAAACTTCGTCAGACCGTAGCCCCCCCTTGACTGATC
GTGCATCCCGATACCTGCGCCGAGACACTTTACGCACGGCTCGTACCCCA
AACACTGGCATGCCTTGCCCTGATGAGTACACGAGCTTGTACGAATTCGG
AAAAACCAAAATTGAGATTCACGCGCCTAAACACGACCGTTTACCGGTAA
CTACCCCACTGAAACCAATATATGGCGAACGGAACGCAACCACTTGCCAT
GCTGCTGCACCCCGAACATTGCGCCCTCCCTTTTCGGCCCACGGTCTGTT
CTCCTCGCGCGACTTTCCCCCACTTGCCCCTTCACGAGCCCCTTCCAATA
TGGACGCTCCCACTACGGCCCGCTCCTCCCTCAACTCTACTGCGCCCACT
ACAGCTCGCTCCCTAAACTCTACTGCGGCTGCTCCGACGGTCAACGCCAC
GTCGGCCGACACTTCGCCGGTGGCCGTCAGAATGATCTCCGGCTCAGGGG
ACTCCCGCCACCCCGGACTACGCCCGGTTGGCCCCATTCCCACGAGGACA
TCGTTAGACCTCACGGCGCCACCTCCTCACCTGGACCATCTGTCGCTAGC
ATGGGACTCCATGTCCCGGACGACAAGAGAGGAACTTCACGCCATCTCCC
TGCTCCAAGTCACCCAAGGCTTCGAGCTCTCCCGTGCCAGAAGACTCGCC
GCAGCAGACGCGGAACGCCAGCGCGCCCTGGAACCCCTTCTCACACGGGC
TGCCGTCCTGGAAGCTTCTGACGACGCCACGCGCCGTGGGATCCTCGAGC
ACGACGCCGCCGCCATTGTTGCGCACCGCACGGCGTCGACCCATGAGGGC
AAGTCCCTCGAATTGCGGACGCGCGCCAAATTGGAATCCGCGCAACAGAC
CGCCGTCCAGGACGACATGACGGCCGTCCACTTGCATTATGATTCGTTGA
TCGCGGAGATCACCAATGGGGACCCCCGGTCGCCGCCCTCCCAGCCGCCC
CGGACATCATCCCCTCCGGCGGTTTTCATCGCCCCCCCTACCGCCGCCCA
TGATCCCGCGCCAACCGACACGGACGACCGTGCCGCAGCCATGCCGTCCC
GCTCCGCCCAGCCGCGTACCTCCGACACGGCCCACCACGCAGCCGCCCCT
GAGACGGCACCATCTGCCGCCTCCTCGAAGAAGCCATTGCCGCCGGTACC
CACCTTCGCAGAAGCCGCAGCTGCCTCCCCCGCCGACGAAGAGAAGTGGA
CTCGGGTCAACTACGGCAAAGACCACCGATCGACCCCCCGCGACCCCTAT
CTTGGCCTACGAATTTCGAAACTTAAGTTTCACAACCCGTCCTTTCCCCT
TGGCCTCCGCGCCCCCATCAAGGACCTCGCGACATCGGTCAACAACGCCC
TGTTCGACCCGGCCAACAAGAGACCCATCTTAAAAGATGCCCTCCGCCAA
GCTACAAAGGACGACTCCCCTTTTTCCGCTAAGATCATAAGGGACATCCT
ACATCTCTGTGACCTCATCCGAGAGTGCTCCCACACCCCGGCCGGCGCGC
GCTGGATCGCAGATACCCTGCAGTCGGCCGCTCCCGACGCGGCCCCCCTC
GCTACACTCCACAATCCGCGTCTTCAGGCAGCGACTCCGCCGCCCCCGGA
CATCGCCGCAGGGAGGACCCTGCCAGCGGGCGGGGAAATGCAAAAAGGAC
GACCTTCGCTGGAGACTCCGACAGCGACCGCTCTCGGCGCCCAACCCAAG
ATCGCCGTGACTATAGATGTCTCGCGTTCCCCGTTCACCTACCTTGCCTT
CCGATGACAACGCCCTCCTTAATTCGCCTGGTGCCGCTTCCCTTGCCGTA
GCCGCCCACGCATCTCCCTCCACTACTGCCCTAAGCACTCCCCACAGACA
GCAGTTTTCGATCCGCCCTTCGAGTACGGGCCCAAATTTTTCGAATCTAT
TGTCCGAAATTGACAGAGCCGATGCCGCCAAAACTTCGTCAGACCGTAGC
CCCCCCTTGACTGATCGTGCATCCCGATACCTGCGCCGAGACACTTTACG
CACGGCTCGTACCCCAAACACTGGCATGCCTTGCCCTGATGAGTACACGA
GCTTGTACGAATTCGGAAAAACCAAAATTGAGATTCACGCGCCTAAACAC
GACCGTTTACCGGTAACTACCCCACTGAAACCAATATATGGCGAACGGAA
CGCAACCACTTGCCATGCTGCTGCACCCCGAACATTGCGCCCTCCCTTTT
CGGCCCACGGTCTGTTCTCCTCGCGCGACTTTCCCCCACTTGCCCCTTCA
CGAGCCCCTTCCAATATGGACGCTCCCACTACGGCCCGCTCCTCCCTCAA
CTCTACTGCGCCCACTACAGCTCGCTCCCTAAACTCTACTGCGGCTGCTC
CGACGGTCAACGCCACGTCGGCCGACACTTCGCCGGTGGCCGTCAGAATG
ATCTCCGGCTCAGGGGACTCCCGCCACCCCGGACTACGCCCGGTTGGCCC
CATTCCCACGAGGACATCGTTAGACCTCACGGCGCCACCTCCTCACCTGG
ACCATCTGTCGCTAGCATGGGACTCCATGTCCCGGACGACAAGAGAGGAA
CTTCACGCCATCTCCCTGCTCCAAGTCACCCAAGGCTTCGAGCTCTCCCG
TGCCAGAAGACTCGCCGCAGCAGACGCGGAACGCCAGCGCGCCCTGGAAC
CCCTTCTCACACGGGCTGCCGTCCTGGAAGCTTCTGACGACGCCACGCGC
CGTGGGATCCTCGAGCACGACGCCGCCGCCATTGTTGCGCACCGCACGGC
GTCGACCCATGAGGGCAAGTCCCTCGAATTGCGGACGCGCGCCAAATTGG
AATCCGCGCAACAGACCGCCGTCCAGGACGACATGACGGCCGTCCACTTG
CATTATGATTCGTTGATCGCGGAGATCACCAATGGGGACCCCCGGTCGCC
GCCCTCCCAGCCGCCCCGGACATCATCCCCTCCGGCGGTTTTCATCGCCC
CCCCTACCGCCGCCCATGATCCCGCGCCAACCGACACGGACGACCGTGCC
GCAGCCATGCCGTCCCGCTCCGCCCAGCCGCGTACCTCCGACACGGCCCA
CCACGCAGCCGCCCCTGAGACGGCACCATCTGCCGCCTCCTCGAAGAAGC
CATTGCCGCCGGTACCCACCTTCGCAGAAGCCGCAGCTGCCTCCCCCGCC
GACGAAGAGAAGTGGACTCGGGTCAACTACGGCAAAGACCACCGATCGAC
CCCCCGCGACCCCTATCTTGGCCTACGAATTTCGAAACTTAAGTTTCACA
ACCCGTCCTTTCCCCTTGGCCTCCGCGCCCCCATCAAGGACCTCGCGACA
TCGGTCAACAACGCCCTGTTCGACCCGGCCAACAAGAGACCCATCTTAAA
AGATGCCCTCCGCCAAGCTACAAAGGACGACTCCCCTTTTTCCGCTAAGA
TCATAAGGGACATCCTACATCTCTGTGACCTCATCCGAGAGTGCTCCCAC
ACCCCGGCCGGCGCGCGCTGGATCGCAGATACCCTGCAGTCGGCCGCTCC
CGACGCGGCCCCCCTCGCTACACTCCACAATCCGCGTCTTCAGGCAGCGA
CTCCGCCGCCCCCGGACATCGCCGCAGGGAGGACCCTGCCAGCGGGCGGG
GAAATGCAAAAAGGACGACCTTCGCTGGAGACTCCGACAGCGACCGCTCT
CGGCGCCCAACCCAAGATCGCCGTGACTATAGGAGAGGATAAGCTCCGGA
TCCAGCGGACCGGACGCCTTCAGGGTTCTTCTCGCAGACTTCGGGGATTT
TTTCGATCGGGCGCCACGTGGAGCCGCGCTCGAGACGCTGCAGAAGTTCG
GCGTTCGCACGGGGACTCCCTTTTCTTCGTACCTTAGGAGAGGATAAGCT
CCGGATCCAGCGGACCGGACGCCTTCAGGGTTCTTCTCGCAGACTTCGGG
GATTTTTTCGATCGGGCGCCACGTGGAGCCGCGCTCGAGACGCTGCAGAA
GTTCGGCGTTCGCACGGGGACTCCCTTTTCTTCGTACCTTAG
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