mRNA_F-serratus_M_contig1140.1229.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1140.1229.1
Unique NamemRNA_F-serratus_M_contig1140.1229.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1140.1229.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.590e-15
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    4 EQKNWQRWLQKCLPVLQLSLRVLRTGVSIIARADILPVDDMLAALKEIAGESIADEVMELGLSIVSRGVGMMQSSLDRQAVVFGKSYEELASFVE 288
            E + WQ WL+ CLPV+++SL +LR G+S++ RAD+LPVD ++  L+E+AGE  A  + E+ L         +   ++ Q  VFG +Y ELA +V+
Sbjct:  979 EIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQDLVDKVNAQEQVFGTAYAELAKWVQ 1073
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BLAST of mRNA_F-serratus_M_contig1140.1229.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.510e-14
Identity = 39/92 (42.39%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   13 NWQRWLQKCLPVLQLSLRVLRTGVSIIARADILPVDDMLAALKEIAGESIADEVMELGLS--IVSRGVGMMQSSLDRQAVVFGKSYEELASF 282
            +W+ WLQK +PV+Q++L  +R GVS+++RADILPVDD++  L+E+AGE  A  + E+ +       G  ++Q  +DR+A VFG ++ +LA +
Sbjct:  802 SWKGWLQKYMPVIQVALWTVRVGVSVVSRADILPVDDVMGKLREVAGEEAATMIGEIDVRGHCSLSGQDLVQE-VDRKAEVFGSAFNKLADW 892
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1140.1229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPJ1_9PHAE8.590e-1541.05Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE5.510e-1442.39Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1140contigF-serratus_M_contig1140:180085..180728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.4258378-CDS-F-serratus_M_contig1140:180084..1801381622929042.4258378-CDS-F-serratus_M_contig1140:180084..180138Fucus serratus maleCDSF-serratus_M_contig1140 180085..180138 +
1690962679.6342626-CDS-F-serratus_M_contig1140:180084..1801381690962679.6342626-CDS-F-serratus_M_contig1140:180084..180138Fucus serratus maleCDSF-serratus_M_contig1140 180085..180138 +
1622929042.4365444-CDS-F-serratus_M_contig1140:180493..1807271622929042.4365444-CDS-F-serratus_M_contig1140:180493..180727Fucus serratus maleCDSF-serratus_M_contig1140 180494..180727 +
1690962679.644666-CDS-F-serratus_M_contig1140:180493..1807271690962679.644666-CDS-F-serratus_M_contig1140:180493..180727Fucus serratus maleCDSF-serratus_M_contig1140 180494..180727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1140.1229.1prot_F-serratus_M_contig1140.1229.1Fucus serratus malepolypeptideF-serratus_M_contig1140 180085..180727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1140.1229.1

>prot_F-serratus_M_contig1140.1229.1 ID=prot_F-serratus_M_contig1140.1229.1|Name=mRNA_F-serratus_M_contig1140.1229.1|organism=Fucus serratus male|type=polypeptide|length=96bp
LEQKNWQRWLQKCLPVLQLSLRVLRTGVSIIARADILPVDDMLAALKEIA
GESIADEVMELGLSIVSRGVGMMQSSLDRQAVVFGKSYEELASFVE
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mRNA from alignment at F-serratus_M_contig1140:180085..180728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1140.1229.1 ID=mRNA_F-serratus_M_contig1140.1229.1|Name=mRNA_F-serratus_M_contig1140.1229.1|organism=Fucus serratus male|type=mRNA|length=644bp|location=Sequence derived from alignment at F-serratus_M_contig1140:180085..180728+ (Fucus serratus male)
TTGGAACAGAAGAACTGGCAACGGTGGCTCCAGAAGTGCTTACCTGTGCT
TCAGGTAAGAACGCCACAATACAGGATATTTCTCTCTTGGGGTTACGGCT
TTTTTTAACAGATATACGTGTACATATGTGGAGCTTTTTATCGTATATTC
TAGTGGAATCCTGGAGTCTAAAGCTTTGGAATCATTTTGTTCTGATTAAT
TACTTATGCTATAAATTGTTGAAAGAAATGAGTTTGCTGCGATGCGCATG
TTCCCCTTTGTGATACACTTAAAAGGTTTGGACGCGTCCATACTTTCCTT
TAAAAGCCTTGATAGGTAGATGATGCTGACAACGATCTGGTATTGCGCTT
ACCATATTTCGGGGCGCTTGTTTTTCGTAAAATGTCCGGGAACTGTGCTG
AACGTTCAGCTTTCCCTACGGGTACTTCGTACGGGTGTCTCCATCATCGC
TCGTGCGGATATACTTCCGGTGGATGACATGCTGGCAGCGCTCAAAGAGA
TCGCCGGTGAGAGCATTGCTGATGAGGTAATGGAGCTGGGGCTGAGCATC
GTAAGTCGCGGGGTGGGAATGATGCAATCATCTCTCGACAGACAGGCCGT
GGTTTTTGGAAAGTCGTACGAAGAGCTGGCGAGCTTTGTGGAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1140:180085..180728+

>mRNA_F-serratus_M_contig1140.1229.1 ID=mRNA_F-serratus_M_contig1140.1229.1|Name=mRNA_F-serratus_M_contig1140.1229.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig1140:180085..180728+ (Fucus serratus male)
TTGGAACAGAAGAACTGGCAACGGTGGCTCCAGAAGTGCTTACCTGTGCT
TCAGTTGGAACAGAAGAACTGGCAACGGTGGCTCCAGAAGTGCTTACCTG
TGCTTCAGCTTTCCCTACGGGTACTTCGTACGGGTGTCTCCATCATCGCT
CGTGCGGATATACTTCCGGTGGATGACATGCTGGCAGCGCTCAAAGAGAT
CGCCGGTGAGAGCATTGCTGATGAGGTAATGGAGCTGGGGCTGAGCATCG
TAAGTCGCGGGGTGGGAATGATGCAATCATCTCTCGACAGACAGGCCGTG
GTTTTTGGAAAGTCGTACGAAGAGCTGGCGAGCTTTGTGGAGCTTTCCCT
ACGGGTACTTCGTACGGGTGTCTCCATCATCGCTCGTGCGGATATACTTC
CGGTGGATGACATGCTGGCAGCGCTCAAAGAGATCGCCGGTGAGAGCATT
GCTGATGAGGTAATGGAGCTGGGGCTGAGCATCGTAAGTCGCGGGGTGGG
AATGATGCAATCATCTCTCGACAGACAGGCCGTGGTTTTTGGAAAGTCGT
ACGAAGAGCTGGCGAGCTTTGTGGAG
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