mRNA_F-serratus_M_contig1140.1226.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1140.1226.1
Unique NamemRNA_F-serratus_M_contig1140.1226.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1140.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1140contigF-serratus_M_contig1140:23950..24263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size280
Cds size144
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1140.1226.1prot_F-serratus_M_contig1140.1226.1Fucus serratus malepolypeptideF-serratus_M_contig1140 23950..24128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.366107-CDS-F-serratus_M_contig1140:23949..240521622929042.366107-CDS-F-serratus_M_contig1140:23949..24052Fucus serratus maleCDSF-serratus_M_contig1140 23950..24052 +
1690962679.6088612-CDS-F-serratus_M_contig1140:23949..240521690962679.6088612-CDS-F-serratus_M_contig1140:23949..24052Fucus serratus maleCDSF-serratus_M_contig1140 23950..24052 +
1622929042.3790874-CDS-F-serratus_M_contig1140:24087..241281622929042.3790874-CDS-F-serratus_M_contig1140:24087..24128Fucus serratus maleCDSF-serratus_M_contig1140 24088..24128 +
1690962679.6177616-CDS-F-serratus_M_contig1140:24087..241281690962679.6177616-CDS-F-serratus_M_contig1140:24087..24128Fucus serratus maleCDSF-serratus_M_contig1140 24088..24128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.3892252-UTR-F-serratus_M_contig1140:24128..242631622929042.3892252-UTR-F-serratus_M_contig1140:24128..24263Fucus serratus maleUTRF-serratus_M_contig1140 24129..24263 +
1690962679.6255405-UTR-F-serratus_M_contig1140:24128..242631690962679.6255405-UTR-F-serratus_M_contig1140:24128..24263Fucus serratus maleUTRF-serratus_M_contig1140 24129..24263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1140.1226.1

>prot_F-serratus_M_contig1140.1226.1 ID=prot_F-serratus_M_contig1140.1226.1|Name=mRNA_F-serratus_M_contig1140.1226.1|organism=Fucus serratus male|type=polypeptide|length=48bp
SCSISILQLTNDASPCYLKSRSVIILSQKQFLQVAANTRISKACNFK*
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mRNA from alignment at F-serratus_M_contig1140:23950..24263+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1140.1226.1 ID=mRNA_F-serratus_M_contig1140.1226.1|Name=mRNA_F-serratus_M_contig1140.1226.1|organism=Fucus serratus male|type=mRNA|length=314bp|location=Sequence derived from alignment at F-serratus_M_contig1140:23950..24263+ (Fucus serratus male)
TCTTGCAGTATCTCAATTCTTCAACTGACTAATGACGCAAGTCCATGTTA
CTTGAAATCTAGGTCAGTTATCATTCTGAGTCAGAAACAGTTTTTGCAGG
TTGCAAATGGATGACGTATCGCATACTGGTATCCCTTACCGCAAATACAA
GAATATCAAAAGCTTGCAACTTCAAGTAGTGCTTTATTATACTTACGTAC
GTTGAAACAGTCATAGACTACTACAGTACAGTAACGAGTCTTGTTTTGTC
AGTCTGCAGTAGAACAATATTTTTGTACCATGTACTAAGTTCAGCACTAC
ATTTCCCAGTACTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1140:23950..24263+

>mRNA_F-serratus_M_contig1140.1226.1 ID=mRNA_F-serratus_M_contig1140.1226.1|Name=mRNA_F-serratus_M_contig1140.1226.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig1140:23950..24263+ (Fucus serratus male)
TCTTGCAGTATCTCAATTCTTCAACTGACTAATGACGCAAGTCCATGTTA
CTTGAAATCTAGGTCAGTTATCATTCTGAGTCAGAAACAGTTTTTGCAGG
TTGTCTTGCAGTATCTCAATTCTTCAACTGACTAATGACGCAAGTCCATG
TTACTTGAAATCTAGGTCAGTTATCATTCTGAGTCAGAAACAGTTTTTGC
AGGTTGCCGCAAATACAAGAATATCAAAAGCTTGCAACTTCAAGTAGCCG
CAAATACAAGAATATCAAAAGCTTGCAACTTCAAGTAG
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