mRNA_F-serratus_M_contig114.1217.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig114.1217.1
Unique NamemRNA_F-serratus_M_contig114.1217.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.170e-44
Identity = 90/245 (36.73%), Postives = 143/245 (58.37%), Query Frame = 3
Query:  738 YGENATFEVDESQNDAEIPEMRG-IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
            +G++    V    +D ++ E    +P+ E VG+L W+A  TRP++   A  + ++  +P   HWKA +  L Y+ RT+ +G+T+ G     M + V++DA++AS    RRSV GG VM   G + WFSR Q+    +T+EAEYVA+A+++ E+ FLRQV   ++P      I V E N+GAI+ A N   +   ++IDV +H +R+ V+   I + +V +  QHAD  TKA   +SF  H  F++
Sbjct:   81 WGQSVPLPVSVKLSDFDVNEASADVPFRELVGSLMWLATQTRPDIADAARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGGVTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQVWRFILPDASMPCIPVFEDNQGAIQNAHNPIINSNLKHIDVMHHFIRELVERKDITITHVPTQVQHADFLTKASSKQSFALHRDFMM 325          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.360e-44
Identity = 86/221 (38.91%), Postives = 135/221 (61.09%), Query Frame = 3
Query:  807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
            +P+ E VG+L W+A  TRP++      + ++  +P   HWKA +  L Y+ RT+ +G+T+       M + V++DA++AS    RRSV GG VM   G + WFSR Q+    +T+EAEYVA+A+++ E+ FLRQV   M+P      I V E N+GAI++A N  ++  +++IDV++H +R+ V+   I +  V +  QHAD  TKAI  +SF  H  F++
Sbjct:   98 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVM 318          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.750e-44
Identity = 88/237 (37.13%), Postives = 142/237 (59.92%), Query Frame = 3
Query:  759 EVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
            + DE++  A++P      + E VG+L W+A  TRP++      + ++  +P   HWKA +  L Y+ RT+ +G+T+       M + V++DA++AS    RRSV GG VM   G + WFSR Q+    +T+EAEYVA+A+++ E+ FLRQV   M+P      I V E N+GAI++  N  ++  +++IDV++H +R+ V+   I + +V +  QHAD  TKAI  +SF  H  F++
Sbjct:  143 DFDENEASADVP------FRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVM 373          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 3.520e-43
Identity = 85/213 (39.91%), Postives = 133/213 (62.44%), Query Frame = 3
Query:  807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSF 1442
            +P+ E VG+L W+A  TRP++      + ++  +P   HWKA +  L Y+ RT+ +G+T+       M + V++DA++AS    RRSV GG VM   G + WFSR Q+    +T+E EYVA+A+++ E+ FLRQV  LM+   D + I V E N+GAI++A N  ++  +++IDV++H +R+ V+   I + +V S  QHAD  TKAI  +SF
Sbjct:  151 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.390e-43
Identity = 85/221 (38.46%), Postives = 135/221 (61.09%), Query Frame = 3
Query:  807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
            +P+ E VG+L W+A  TRP++      + ++  +P   HWKA +  L Y+ RT+ +G+T+       M + V++DA++AS    RRSV GG VM   G + WFSR Q+    +T+EAEYVA+A+++ E+ FLRQV   M+P      I V E N+GAI++A N  ++  +++IDV++H +R+ V+   I + +V +  QHAD  TKAI  +S   H  F++
Sbjct:  215 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVM 435          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.530e-42
Identity = 86/219 (39.27%), Postives = 132/219 (60.27%), Query Frame = 3
Query:  807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARF 1460
            +P+ E VG+L W+A  TRP++      + ++  +P   HWKA +  L Y+ RT+ +G+T+       M + V++DA++AS     RSV GG VM   G + WFSR Q+    +T+EAEYVA A+++ E+ FLRQV   M+P      I V E N+GAI++A N  ++  +++IDV++H +R+ V+   I + +V S  QHAD  TKAI  +SF  H  F
Sbjct:  190 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 5.760e-42
Identity = 87/221 (39.37%), Postives = 136/221 (61.54%), Query Frame = 3
Query:  807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
            +P+ E VG+L W+A  TRP++      + ++  +P   HWKA +  L Y+ RT+ +G+T+       M + V++DA++AS    RRSV GG VM   G + WFSR Q+    +T+EAEYVA+A+++ E+ FLRQV   M+P      I V E N+GAI++A N  ++  +++IDV++H +R+ V+   I + +V S  QHAD  TKAI  +SF  H  F++
Sbjct: 1249 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVM 1469          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.360e-41
Identity = 86/238 (36.13%), Postives = 132/238 (55.46%), Query Frame = 3
Query:  756 FEVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
            F+ DE   D         P+ E VG+L W+A  TRP +      + ++  +P   HW A M  L Y  RT+  G+++   T +   L  + DA+ AS    RRSV GG V    GA+ WFS  Q+    +T+EAEYVAL ++V E+ FLRQ+   M+P +    I + E N+GAI++A+N  S+  +++IDV++H +R+ V+     V +V S  Q AD  TK++   +FE H  F++
Sbjct:   60 FDADEVATD--------FPFRELVGSLMWLATQTRPAIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAFESHRDFVM 289          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.650e-41
Identity = 87/238 (36.55%), Postives = 136/238 (57.14%), Query Frame = 3
Query:  756 FEVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
            F+ DE   D         P+HE VG+L W+A  TRP++     T+ ++  +P    W A M  L Y  RT+  G+++   T + + L  + DA+ A+    RRSV GG V    GA+ WFSR Q+    +T+EAEYVAL ++V E+ FLRQ    M+P +    I + E N+GAI++A+N  S+  ++++DV++H+VR+ V+   I V +V    Q AD  TK++   +FE H  F++
Sbjct:  197 FDADEVTTD--------FPFHELVGSLMWLATQTRPDIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFVM 426          
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.330e-41
Identity = 84/229 (36.68%), Postives = 137/229 (59.83%), Query Frame = 3
Query:  759 EVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSF 1442
            ++DE++  A++P      + E VG++ W+A  TRP++      + ++  +P   HWKA +  L Y+ RT+ +G+T+       M + V++DA++      RRSV GG VM   G + WFSR Q+    +T+EAEYVA+A+++ E+ FLRQV   M+P      I V E N+GAI++A N  ++  +++ID ++H++R  V+   I + +V S  QHAD  TKAI  +SF
Sbjct:   60 DLDENEACADVP------FRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2P8_9PHAE1.170e-4436.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.360e-4438.91Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE3.750e-4437.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJP2_9PHAE3.520e-4339.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE5.390e-4338.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE1.530e-4239.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE5.760e-4239.37Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KSZ5_9PHAE1.360e-4136.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D6_9PHAE1.650e-4136.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K2_9PHAE2.330e-4136.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig114contigF-serratus_M_contig114:327928..329451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue6e-18
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1466
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig114.1217.1prot_F-serratus_M_contig114.1217.1Fucus serratus malepolypeptideF-serratus_M_contig114 328993..329451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.593411-UTR-F-serratus_M_contig114:327927..3284951622929041.593411-UTR-F-serratus_M_contig114:327927..328495Fucus serratus maleUTRF-serratus_M_contig114 327928..328495 +
1690962679.1754222-UTR-F-serratus_M_contig114:327927..3284951690962679.1754222-UTR-F-serratus_M_contig114:327927..328495Fucus serratus maleUTRF-serratus_M_contig114 327928..328495 +
1622929041.6081908-UTR-F-serratus_M_contig114:328553..3289921622929041.6081908-UTR-F-serratus_M_contig114:328553..328992Fucus serratus maleUTRF-serratus_M_contig114 328554..328992 +
1690962679.184941-UTR-F-serratus_M_contig114:328553..3289921690962679.184941-UTR-F-serratus_M_contig114:328553..328992Fucus serratus maleUTRF-serratus_M_contig114 328554..328992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.621487-CDS-F-serratus_M_contig114:328992..3294511622929041.621487-CDS-F-serratus_M_contig114:328992..329451Fucus serratus maleCDSF-serratus_M_contig114 328993..329451 +
1690962679.1931536-CDS-F-serratus_M_contig114:328992..3294511690962679.1931536-CDS-F-serratus_M_contig114:328992..329451Fucus serratus maleCDSF-serratus_M_contig114 328993..329451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig114.1217.1

>prot_F-serratus_M_contig114.1217.1 ID=prot_F-serratus_M_contig114.1217.1|Name=mRNA_F-serratus_M_contig114.1217.1|organism=Fucus serratus male|type=polypeptide|length=153bp
MKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEA
EYVALAEIVNELRFLRQVSALMVPSIDYNIRVHEFNEGAIKMAENRFSSR
RTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHAR
FLL
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mRNA from alignment at F-serratus_M_contig114:327928..329451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig114.1217.1 ID=mRNA_F-serratus_M_contig114.1217.1|Name=mRNA_F-serratus_M_contig114.1217.1|organism=Fucus serratus male|type=mRNA|length=1524bp|location=Sequence derived from alignment at F-serratus_M_contig114:327928..329451+ (Fucus serratus male)
GAGGCTAAGGCATCCCCCGAGTTCCCGCAATGGTGCGGTACGCTCAAGCG CAAGATGGACGGCCAAATTACGCGTGATGTATGGAAGGTCGTCGATCGAC CCAAAGGAAAAACCATACTCGGCACCAAGACGTTTTTTGAACGGAACGTC GGCCAGAACGGCCGTGTAGAAAAGTACAAGTGCCGCTTCGCGGCCCAGGG TTTCCGCCAGATCAAGGGGATTCACCACCAAGAGTCATCGTCGCCGACAC CTACACAGCCGAGCATCCGGATGGCGCTGGTGGTGATGGCCGTGTTGGGC TGGGAGGGGTGGCAGCTTGACGTAGAAGTGGCATTTCTCGGGGCGGATGT TACGGAGGAGCTCTACGTTGAGCTCCCCGACGGATATCGCGACTTTCCGA ACCAGGTTGAACGACTGCAGAAGGCCATGTGCGGCCTGATGCACGCCAGA TTACTGTGGTCGAAGAAGTTCGACGGATAGGTGATAGCGAAGGGGTTCGA GAGGTCCCAAGCCGATCCCCGCGTGTTCCGGCGGAAGCAGGAAGGTCGTC GTAATCATCGTGGTCTACGTCGACGATTTACTAGTGCTGAGCGAAACGAA GCAGGACGAGCATCAGGCGTTGGAAGACCTTCGATCCAGCTTCCCCATCA AGGGTCTAGGGGAGATCTCGTACTACCTGGGATGTTACATCACTCGGGAC CGCACGGCGAGGACGGTGGTGTTCGATCAGCAGCGTTACGCGCAGACGGT AACTGAGCGATTCGAAATTCGGAAGACCAGCTTGAACCCTGTTTTTATGG GGAGAACGCCACTTTTGAGGTAGACGAGTCGCAGAACGACGCTGAGATCC CAGAGATGCGCGGCATCCCTTATCACGAGACAGTGGGGGCACTAACGTGG GTAGCCAACATGACTCGGCCTGAACTCACCTACACCGCGCACACACTTCC CAAGTTCGGCGACAACCCCGGGCCCGAGCACTGGAAGGCGGTAATGAAAG CTCTGTAGTACCTGAATCGGACGGCGAGCCTAGGGGTAACATATGGAGGC GCGACGGAGGACAACATGAAGCTATCGGTATGGATGGATGCCAATCACGC ATCATGCCCAGATACGCGCCGCTCGGTATTGGGGGGCGCGGTGATGCTCA GCAGAGGTGCAATACGTTGGTTTTCGCGGGCGCAGAGAATAACCGCGACA GCGACGTCCGAAGCGGAGTATGTAGCACTGGCGGAGATAGTGAATGAGCT ACGTTTCCTTCGGCAGGTGTCAGCGTTAATGGTACCTTCAATCGACTACA ACATCCGTGTTCACGAGTTTAATGAGGGCGCTATCAAGATGGCAGAGAAT AGGTTTAGCAGTCGCCGAACAAGATACATCGACGTGAAGTATCATATGGT TCGGGATGCCGTCGATGGGGGAATAATCCGCGTAGAGTATGTCAAGTCGG GAGAACAGCATGCGGACGCACCAACTAAGGCGATAGATGCTAAGTCGTTT GAAAAGCACGCGCGATTCCTGTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig114:327928..329451+

>mRNA_F-serratus_M_contig114.1217.1 ID=mRNA_F-serratus_M_contig114.1217.1|Name=mRNA_F-serratus_M_contig114.1217.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig114:327928..329451+ (Fucus serratus male)
ATGAAGCTATCGGTATGGATGGATGCCAATCACGCATCATGCCCAGATAC
GCGCCGCTCGGTATTGGGGGGCGCGGTGATGCTCAGCAGAGGTGCAATAC
GTTGGTTTTCGCGGGCGCAGAGAATAACCGCGACAGCGACGTCCGAAGCG
GAGTATGTAGCACTGGCGGAGATAGTGAATGAGCTACGTTTCCTTCGGCA
GGTGTCAGCGTTAATGGTACCTTCAATCGACTACAACATCCGTGTTCACG
AGTTTAATGAGGGCGCTATCAAGATGGCAGAGAATAGGTTTAGCAGTCGC
CGAACAAGATACATCGACGTGAAGTATCATATGGTTCGGGATGCCGTCGA
TGGGGGAATAATCCGCGTAGAGTATGTCAAGTCGGGAGAACAGCATGCGG
ACGCACCAACTAAGGCGATAGATGCTAAGTCGTTTGAAAAGCACGCGCGA
TTCCTGTTGATGAAGCTATCGGTATGGATGGATGCCAATCACGCATCATG
CCCAGATACGCGCCGCTCGGTATTGGGGGGCGCGGTGATGCTCAGCAGAG
GTGCAATACGTTGGTTTTCGCGGGCGCAGAGAATAACCGCGACAGCGACG
TCCGAAGCGGAGTATGTAGCACTGGCGGAGATAGTGAATGAGCTACGTTT
CCTTCGGCAGGTGTCAGCGTTAATGGTACCTTCAATCGACTACAACATCC
GTGTTCACGAGTTTAATGAGGGCGCTATCAAGATGGCAGAGAATAGGTTT
AGCAGTCGCCGAACAAGATACATCGACGTGAAGTATCATATGGTTCGGGA
TGCCGTCGATGGGGGAATAATCCGCGTAGAGTATGTCAAGTCGGGAGAAC
AGCATGCGGACGCACCAACTAAGGCGATAGATGCTAAGTCGTTTGAAAAG
CACGCGCGATTCCTGTTG
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