mRNA_F-serratus_M_contig114.1213.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig114.1213.1
Unique NamemRNA_F-serratus_M_contig114.1213.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: D8LBP8_ECTSI (Nudix (Nucleoside diphosphate linked moiety X)-type motif 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP8_ECTSI)

HSP 1 Score: 430 bits (1105), Expect = 5.930e-141
Identity = 198/265 (74.72%), Postives = 234/265 (88.30%), Query Frame = 3 
Query:  315 ASTTITTRAGLPLPLHYEESKFNSVTVDVSKIKVEDTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKESHENAMWKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLM-PKEGGEVQITKCAHEITDACWMPLEQFKKETRHSMLAVVADILDKPEDKEMTRSLHESVVPGRKPYYLYHR 1106
            +S+T  +  GLP+PL +E+SKFNS TVD++KI+VEDTADFALKLF+TVD LRK+ KAA+WLKVP DFCH+IS+A+HYGF+ HHT+PKYLMM LWLPEDVP+K+P YGTHHVGVAGCV+N + EVLLVK+ H+ AMWKFPGGLAD GEGIGEAA REV+EETGV  EFRSVLSMRHQH+MQFGNSD YFICRLM P++ G + I KC HEI DACWMPL+QFKK+TRHSMLAVVAD+L+KPE+KE+TRSLHES +P R PY+LYHR
Sbjct:   69 SSSTTISNVGLPVPLPFEQSKFNSATVDIAKIQVEDTADFALKLFATVDKLRKDGKAALWLKVPTDFCHFISIASHYGFQLHHTQPKYLMMYLWLPEDVPDKVPPYGTHHVGVAGCVMNSQDEVLLVKDKHKGAMWKFPGGLADVGEGIGEAAVREVWEETGVMTEFRSVLSMRHQHEMQFGNSDLYFICRLMLPEDTGALDINKCNHEIADACWMPLDQFKKQTRHSMLAVVADMLEKPEEKELTRSLHESAIPDRAPYFLYHR 333
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: A0A836C878_9STRA (Nucleoside diphosphate linked moiety X-type motif 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C878_9STRA)

HSP 1 Score: 262 bits (670), Expect = 7.160e-77
Identity = 127/263 (48.29%), Postives = 174/263 (66.16%), Query Frame = 3 
Query:  342 GLPLPLHYEESKFNSVTVDVSKIKVEDTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHY-GFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKESHENAMWKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLMPKEGGEV-------QITKCAHEITDACWMPLEQFKKETRHSMLAVVADIL-DKPEDKEMTRSLHESVVPGRKPYYLYH 1103
            GLP    Y+E ++NS +++  K++ +DTADFA KL +TV  L++  K+A+WLKVPMD+ HY+ VAA   GF  HH  P  ++M  WL + VP+K+P + THHVGVAGCV++    VL+VKE H  A+WKFPGGLA+ GE +G AA REV EETGV + F  +L+ R QH MQFGNSD YFICR+  + G          ++  CAHEI +A WMPLE+F  +  H M+ VVA +L + P++ E+     ES+   R PY +Y+
Sbjct:   60 GLPDLFPYKEGQYNSASINAGKVRAQDTADFAAKLSATVAHLQREEKSAVWLKVPMDYAHYLPVAARAAGFRPHHALPDAVLMVRWLLDGVPDKVPPFATHHVGVAGCVLDARGRVLVVKERHPRALWKFPGGLAEAGEDLGAAAAREVEEETGVRSAFAGLLAFRQQHAMQFGNSDLYFICRMTRRTGEXXXXXXXXQELRPCAHEIAEARWMPLEEFAAQNTHPMMGVVAKMLMEGPQNHELKEETQESIFGSRPPYKMYY 322
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: A0A835YXX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 9.400e-54
Identity = 116/289 (40.14%), Postives = 156/289 (53.98%), Query Frame = 3 
Query:  309 RFASTTITTRAGLPLPLHYEESKFNSVTVDVSKIKVEDTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKES--------HENAMWKFPGGLADPGEGIGEAAEREVFEET-----GVEAEFRSVLSMRHQHDMQFGNSDA-YFICRLMPKEGGEVQITKCAHEITD----ACWMPLEQFKK--ETRHSMLAVVADILDK-PEDKEMTRSLHESVVPGRKPYYL-YHRD 1109
            R  S++I T  G+P P  YEE ++NS TV+  K+  EDTADFA  LF+T+  LR   K A+WL+VPMDF HY+ +A HYGF+FHHT+   +MM LWL  DV N+IP + THHV V+  V N +  VL+V+             + + FPGGLA+ GE + +AA R V         G    FR VL++R  HD   G + A +F+C L                       A W+P+   ++  E    + A VA +L+   E  EM   +H S VPGR PY L YHRD
Sbjct:   54 RLMSSSIPTMTGMPDPFPYEEGRYNSATVNAGKVYAEDTADFATSLFATITHLRHEKKNALWLRVPMDFAHYVPIAGHYGFKFHHTEENAVMMVLWLRGDVANRIPPFATHHVDVSAVVTNADGHVLVVRRPPXXXXXXXXXXSSFTFPGGLAERGEDLADAAARAVAAAAPRALGGGGVAFRGVLALRQAHDAHAGGAGALHFLCHLTAAXXXXXXXXXXXXXXXXXXXXAQWVPVSALREQGEAGDVVAAAVAQLLEGGAERSEMAAEVHASAVPGRPPYTLFYHRD 342
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: UPI00142569A1 (nucleoside diphosphate-linked moiety X motif 6-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142569A1)

HSP 1 Score: 189 bits (479), Expect = 1.370e-50
Identity = 87/204 (42.65%), Postives = 133/204 (65.20%), Query Frame = 3 
Query:  366 EESKFNSVTVDVSKIKVEDTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKES-HENAMWKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLMPKEGGEVQITKCAHEITDACWMPLEQF 974
            ++ ++N + +++ + K +    F  +L  +++    +    +WLK+ ++   +I+VAA +GF FHH +  Y+MM  WLP D PN++P Y TH+VGVAG VVN   +VL+VKE  ++ A WK PGG+ADPGE +G  A+REVFEETG+EAEF S+L+ R QH  +FG SD YF+C +        +I  C HEI+D  WM ++++
Sbjct:    7 KKDQYNGIIINIKEHKCDSEKIFNDRLKRSLEEWNTSGIRGVWLKIAIECAAFIAVAAKHGFVFHHAQTDYVMMIKWLPTDEPNQLPGYTTHYVGVAGFVVNENNQVLVVKERFYKKANWKLPGGMADPGEDLGVTAKREVFEETGIEAEFISLLAFRQQHGFRFGQSDLYFVCEMKALNS---EIASCQHEISDCMWMNVDEY 207
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: A0A1S3I2N1_LINUN (nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I2N1_LINUN)

HSP 1 Score: 187 bits (476), Expect = 4.130e-50
Identity = 101/257 (39.30%), Postives = 145/257 (56.42%), Query Frame = 3 
Query:  348 PLPLHYEESKFNSVTVDVSKIKVEDTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKES-HENAMWKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLMPKEGGEVQITKCAHEITDACWMPLEQF--KKETRHSMLAVVADILDKPEDKEMTRSLHESVVP---GRKPYYLY 1100
            P  L     +++ V +D++K   E   DF  KL +++    K     +W+K+P+D    + + A + F ++H KP Y+MM  WLP+D  N IP Y   ++G AG VVN E+++L+++E  H   MWK PGGLAD GE IGEAAEREVFEETGV  +F+S++  RH H  + G  D YFIC + P      +ITKC  EI+  CWM L+++    +  H+        L+    KE   S+  +VVP   G K   LY
Sbjct:    6 PNTLPAMRDRYDGVIIDINKQTYETEEDFEKKLVNSLCSWSKEAVRGVWVKIPLDMATLVPICAKHKFVYNHAKPSYVMMTRWLPQDEENCIPPYANQYLGCAGFVVNSEKKLLVIQEKYHVQKMWKLPGGLADTGEDIGEAAEREVFEETGVRCKFQSIICFRHMHKFRHGLDDFYFICLMEPMSK---EITKCDREISACCWMDLDEYINHPDVSHTNKMFAECYLNMIARKEKL-SIQPTVVPHFSGTKNDLLY 258
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: C3ZV31_BRAFL (Nudix hydrolase domain-containing protein (Fragment) n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZV31_BRAFL)

HSP 1 Score: 181 bits (460), Expect = 4.490e-49
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 3 
Query:  468 RKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKESHENAM---WKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLMPKEGGEVQITKCAHEITDACWMPLEQF 974
            ++N    +W+K+ +     + +AA  GFEFHH    Y+MM  WLP D PN IP Y  H+VGVAG VVN + EVL+++E + ++M   WK PGGLA+PGE + + A REV EETGV+AEF S+L  RHQH+  FG SD YF+C + PK    V IT C  E++   WMP E++
Sbjct:    4 QENGVRGVWIKISLKDAEIVPIAAQNGFEFHHAHKDYVMMIRWLPTDEPNMIPGYAAHYVGVAGFVVNDQNEVLVIQEKYTHSMQAHWKLPGGLAEPGEDLADTARREVLEETGVDAEFLSLLCFRHQHNFSFGCSDMYFVCHMKPKN---VDITICEQEVSKCQWMPFEEY 172
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: A0A7S2MDL7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDL7_9STRA)

HSP 1 Score: 181 bits (459), Expect = 3.150e-48
Identity = 105/242 (43.39%), Postives = 140/242 (57.85%), Query Frame = 3 
Query:  420 DTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVN-------HEREVLLVKESHEN-AMWKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLMPKEGGEVQITKCAHEITDACWMPLEQFKKETRHSML--AVVADILDKP----EDKEMTRSLHESVVPGRKPYYLYH 1103
            DT+DF + L S++       K A WL VP+DF HYISVAA  GF FHH +     M LW+  + P++IP + TH VGV G VV         +  VL+++E+  N   +K PGGL D  E  G+AA REV EETGVEAEF  +L+MRHQH MQFG SD Y I  L       V +    +E+ DA WM L +F++ + H M+  A+ A   +      ++KE+     +SVVPGR PY LY+
Sbjct:    1 DTSDFGMSLVSSLKAFNSAGKLATWLVVPLDFAHYISVAALSGFRFHHAEGDTATMVLWMRPNEPSRIPPFATHQVGVGGLVVRGGPDDNPEDPHVLVIREAGRNYTNFKLPGGLCDVAEDFGDAAVREVREETGVEAEFSRILTMRHQHGMQFGRSDIYCIALL---RATSVDVAIDTNELEDARWMKLSEFRENSPHEMVEHAIQAATGEGGAVGLQEKEL-----KSVVPGRVPYKLYY 234
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: A0A6P4YAU5_BRABE (nudix hydrolase 8-like isoform X1 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YAU5_BRABE)

HSP 1 Score: 179 bits (453), Expect = 4.940e-47
Identity = 87/205 (42.44%), Postives = 126/205 (61.46%), Query Frame = 3 
Query:  369 ESKFNSVTVDVSKIKVEDTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKESHENAM---WKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLMPKEGGEVQITKCAHEITDACWMPLEQF 974
            + ++  V V+ +K +   T +F  KL + +   ++     +W+K+ +     + +AA  GFEFHH +  Y+MM  WLP D PN IP Y  H+VGVAG VVN   EVL+++E + +++   WK PGGLA+PGE + + A REV EETGV+AEF S+L  RHQH+  FG SD YF+C + PK    + IT    E+T   WMP+ +F
Sbjct:   11 KDRYGGVVVETTKQQCS-TEEFKNKLEADLTKWQEIGVRGVWIKISLKDADIVPIAAQKGFEFHHAQKDYVMMIKWLPTDEPNMIPGYAAHYVGVAGFVVNDRNEVLVIQEKYTHSVKAHWKLPGGLAEPGEDLADTARREVLEETGVDAEFLSLLCFRHQHNFSFGCSDMYFVCHMKPKN---LDITVGEQEVTKCQWMPISEF 211
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: UPI000F555542 (nucleoside diphosphate-linked moiety X motif 6-like n=2 Tax=Pocilloporidae TaxID=46729 RepID=UPI000F555542)

HSP 1 Score: 176 bits (446), Expect = 9.850e-46
Identity = 101/268 (37.69%), Postives = 150/268 (55.97%), Query Frame = 3 
Query:  357 LHYEESKFNSVTVDVSKIKVE-DTADFALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHER-EVLLVKESH--------ENAMWKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQ--FGNSDAYFICRLMPKEGGEVQITKCAHEITDACWMPLEQFKKETRHSMLAVVADILDKP------EDKEMTRSLHESVVPGRKPYYLYHR 1106
            LH+ E+ FN VTV++ ++  +    +F++KL  ++   RK  K ++W+KVP+   + I VA  +GF +HH    + M+  WLP+   NK+P Y TH VGV+G V+N E+ EVL+V++ +        +  +WKFPGGL+D GE I E A REV+EETG+ AEF+S+L  R QH M+  F  SD Y +CR+ P   G   I+ C  EI    WM L      T  + L  +A  L K       E  ++  +   S V   + + L+HR
Sbjct:   31 LHWNEAYFNGVTVNLDQLGEQCSPGEFSVKLTRSIQQWRKERKKSVWMKVPIVQSYLIPVAFEHGFSYHHAVGDHAMLLKWLPKKEHNKVPPYATHQVGVSGLVLNREKNEVLVVQDKNLLKIGRRLKRPVWKFPGGLSDEGESIEETAVREVWEETGIRAEFKSILLFRQQHKMKNAFDKSDVYVVCRMEPLSFG---ISHCEDEIAQCQWMELSTLLTHTDTTPLTKLAARLAKHGLKNGFESVDIVANSMRSWVNPSQTFSLFHR 295
[Close]
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Match: A0A7S4AY20_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AY20_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.250e-45
Identity = 108/268 (40.30%), Postives = 153/268 (57.09%), Query Frame = 3 
Query:  357 LHYEESKFNSVTVDVSKIKVEDTADFALKLFST-----VDLLRKNHKAAIWLKVPMDFCHYISV--AAHYGFEFHHTKPKYLMMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKESHENAM-WKFPGGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFICRLMPKE--GGEVQI-TKCAHEITDACWMPLEQFK-------KETR-HSMLAVVAD-ILDKPEDKEMTRSLHESVVPGRKPYYLY 1100
            L Y ++  NS T+ V     +    F+ + FST     V +L++  K+++W++VPM     I    AA  GFEFHH +   L +  WL +D+P+K+P + THHVGV   V+N   E+L ++E  +N   WK P GLAD GE I +AAEREV EETG+ A   S+LS RH H M  G SD +F+CRL+PKE   G VQ     A EI +A W+PL +++       +E++ H ++  V + I DK     MT     SV+PGR+   LY
Sbjct:   94 LPYVDTSHNSATITVPTDDEDGNGAFSAENFSTLLTNTVTILQELEKSSLWVEVPMSKARLIEEIEAADLGFEFHHAQGSTLKLNAWLRKDIPSKVPEFATHHVGVGAVVINSRNEILCIRELRKNYHPWKIPTGLADLGESIHDAAEREVLEETGITASCHSILSFRHTHGMANGRSDLFFVCRLIPKEDDNGSVQTPVPQACEIAEAKWIPLSEYRDMVDGLTEESKGHPVMTFVMNQIFDKGLRINMTEV--SSVIPGRRSTPLY 359
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig114.1213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP8_ECTSI5.930e-14174.72Nudix (Nucleoside diphosphate linked moiety X)-typ... [more]
A0A836C878_9STRA7.160e-7748.29Nucleoside diphosphate linked moiety X-type motif ... [more]
A0A835YXX9_9STRA9.400e-5440.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00142569A11.370e-5042.65nucleoside diphosphate-linked moiety X motif 6-lik... [more]
A0A1S3I2N1_LINUN4.130e-5039.30nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=757... [more]
C3ZV31_BRAFL4.490e-4948.26Nudix hydrolase domain-containing protein (Fragmen... [more]
A0A7S2MDL7_9STRA3.150e-4843.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6P4YAU5_BRABE4.940e-4742.44nudix hydrolase 8-like isoform X1 n=3 Tax=Branchio... [more]
UPI000F5555429.850e-4637.69nucleoside diphosphate-linked moiety X motif 6-lik... [more]
A0A7S4AY20_9STRA1.250e-4540.30Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig114contigF-serratus_M_contig114:237950..243065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score431.4
Seed ortholog evalue3.7e-118
Seed eggNOG ortholog2880.D8LBP8
Preferred nameNUDT6
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0008083,GO:0008150,GO:0009966,GO:0010469,GO:0010646,GO:0023051,GO:0030545,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.8-hydroxy-dADP phosphatase activity
EggNOG OGsKOG0648@1,KOG0648@2759
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-27_003180.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2590
Cds size984
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig114.1213.1prot_F-serratus_M_contig114.1213.1Fucus serratus malepolypeptideF-serratus_M_contig114 239453..242934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.9803927-UTR-F-serratus_M_contig114:237949..2388471622929040.9803927-UTR-F-serratus_M_contig114:237949..238847Fucus serratus maleUTRF-serratus_M_contig114 237950..238847 -
1690962678.7850387-UTR-F-serratus_M_contig114:237949..2388471690962678.7850387-UTR-F-serratus_M_contig114:237949..238847Fucus serratus maleUTRF-serratus_M_contig114 237950..238847 -
1622929040.9955716-UTR-F-serratus_M_contig114:238875..2394521622929040.9955716-UTR-F-serratus_M_contig114:238875..239452Fucus serratus maleUTRF-serratus_M_contig114 238876..239452 -
1690962678.7977314-UTR-F-serratus_M_contig114:238875..2394521690962678.7977314-UTR-F-serratus_M_contig114:238875..239452Fucus serratus maleUTRF-serratus_M_contig114 238876..239452 -
1622929041.080398-UTR-F-serratus_M_contig114:242934..2430651622929041.080398-UTR-F-serratus_M_contig114:242934..243065Fucus serratus maleUTRF-serratus_M_contig114 242935..243065 -
1690962678.864927-UTR-F-serratus_M_contig114:242934..2430651690962678.864927-UTR-F-serratus_M_contig114:242934..243065Fucus serratus maleUTRF-serratus_M_contig114 242935..243065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.008606-CDS-F-serratus_M_contig114:239452..2395161622929041.008606-CDS-F-serratus_M_contig114:239452..239516Fucus serratus maleCDSF-serratus_M_contig114 239453..239516 -
1690962678.813839-CDS-F-serratus_M_contig114:239452..2395161690962678.813839-CDS-F-serratus_M_contig114:239452..239516Fucus serratus maleCDSF-serratus_M_contig114 239453..239516 -
1622929041.0202496-CDS-F-serratus_M_contig114:239880..2402741622929041.0202496-CDS-F-serratus_M_contig114:239880..240274Fucus serratus maleCDSF-serratus_M_contig114 239881..240274 -
1690962678.8258767-CDS-F-serratus_M_contig114:239880..2402741690962678.8258767-CDS-F-serratus_M_contig114:239880..240274Fucus serratus maleCDSF-serratus_M_contig114 239881..240274 -
1622929041.0343025-CDS-F-serratus_M_contig114:240743..2409141622929041.0343025-CDS-F-serratus_M_contig114:240743..240914Fucus serratus maleCDSF-serratus_M_contig114 240744..240914 -
1690962678.8358254-CDS-F-serratus_M_contig114:240743..2409141690962678.8358254-CDS-F-serratus_M_contig114:240743..240914Fucus serratus maleCDSF-serratus_M_contig114 240744..240914 -
1622929041.0496063-CDS-F-serratus_M_contig114:241414..2415241622929041.0496063-CDS-F-serratus_M_contig114:241414..241524Fucus serratus maleCDSF-serratus_M_contig114 241415..241524 -
1690962678.845658-CDS-F-serratus_M_contig114:241414..2415241690962678.845658-CDS-F-serratus_M_contig114:241414..241524Fucus serratus maleCDSF-serratus_M_contig114 241415..241524 -
1622929041.0661337-CDS-F-serratus_M_contig114:242689..2429341622929041.0661337-CDS-F-serratus_M_contig114:242689..242934Fucus serratus maleCDSF-serratus_M_contig114 242690..242934 -
1690962678.855476-CDS-F-serratus_M_contig114:242689..2429341690962678.855476-CDS-F-serratus_M_contig114:242689..242934Fucus serratus maleCDSF-serratus_M_contig114 242690..242934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig114.1213.1

>prot_F-serratus_M_contig114.1213.1 ID=prot_F-serratus_M_contig114.1213.1|Name=mRNA_F-serratus_M_contig114.1213.1|organism=Fucus serratus male|type=polypeptide|length=328bp
MSLKLGTTIVRSIGGSFQYCGPNTVNAAAASSSRRTSCSTRNRNIISSEA
RASITLFQQRFASTTITTRAGLPLPLHYEESKFNSVTVDVSKIKVEDTAD
FALKLFSTVDLLRKNHKAAIWLKVPMDFCHYISVAAHYGFEFHHTKPKYL
MMCLWLPEDVPNKIPTYGTHHVGVAGCVVNHEREVLLVKESHENAMWKFP
GGLADPGEGIGEAAEREVFEETGVEAEFRSVLSMRHQHDMQFGNSDAYFI
CRLMPKEGGEVQITKCAHEITDACWMPLEQFKKETRHSMLAVVADILDKP
EDKEMTRSLHESVVPGRKPYYLYHRDT*
back to top

mRNA from alignment at F-serratus_M_contig114:237950..243065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig114.1213.1 ID=mRNA_F-serratus_M_contig114.1213.1|Name=mRNA_F-serratus_M_contig114.1213.1|organism=Fucus serratus male|type=mRNA|length=5116bp|location=Sequence derived from alignment at F-serratus_M_contig114:237950..243065- (Fucus serratus male)
CGTGGTACGTCCTTCTGTTATAAGATTACTATTACACGACAGAGTGAAAG
TCAAATGACAATTACCACTCGGTAATCAGTCCTTGATTACTCATCATCTC
CAAAACAGCCACACGTACCCATCGCGCGAATATGTCATTAAAATTGGGTA
CTACTATCGTACGGTCTATCGGTGGCTCCTTTCAATACTGTGGGCCAAAC
ACCGTAAATGCGGCAGCCGCAAGTTCATCGAGGCGGACAAGTTGCTCAAC
TAGAAACAGGAACATAATCTCTTCAGAAGCAAGAGCAAGTATTACGTTGT
TTCAGCAGCGATTCGCTTCCACAACAATCACCACAAGGGCTGGGCTGCCC
TTGCCTCTTCATTACGAGGAGTCAAAGTAAGTAACCAGAAGCTTGCCTAG
TTGATAGGTTTATATTGCTCTGGGATTACGATTATTGTCAAGTCACTTCT
CTGTCTTCGCCTCGAAGATAGGGACTACTTCTAGATGTGTCGATGTATAC
AGAGTTATATTCTTATCGGTTTTCTTTCTAATCTTATCCGTACGTGGCAG
CATACAGGAAGACTAAGTGCACACGTTCAGCACAATATAGTAGCAGTTCA
TATGACCTTCAGGGGGTACAGTTTGGTTGCCAAGCACGCTGTTGGAGTTC
ACGTTCCACACAACAACCAATGTGTACACGCACGGCACCTCTGTCTAGGT
TCTGTTCTGTTATACGTTGTACGTTGCTCTACTTGCATTACAGTAGTAGT
ACAGCTCTAGTCTACATAATCTTTAGAATGTTCGATCCGAACGTGTTTGG
TTCGTACGGTATGGTAGGTAGGCGAAGAGCCGAGGTATGTATGTACCCGT
ATCATAAGCAAATTGAACAAGGACATCCTTCCGATCACAGACCCAATGTA
ACGAAATTGATCTGGATCCAGGATCATGGGTGTCTTTTTGTGTCTGGTTT
GGTATCCCTGCATGGCGATTAATGTTGCAAGTTAGAAGCGATAAACCACT
AGACTACTGAGTCATGTAGTCTATTTATAGTCGTTTATCTAACTCACAAA
TATAAGTTTACAGTAAAACGGTGGGTTTCTCCCGATATTATACTACTGAT
GTTGACCCTATCCTAATACCATTGCGGAACCCGATTAAATGTCACTTTTG
TCTTTGCAGCCTAAGTTCACCTCAGAAGGTTAAGATGCGTTCATATTTTT
CTTTAAACCAAGGTACTACGTACGGTTCAGATCAAAGTTCTTAGGAGGGA
ACCGGCTGGGTACAGTGTATGATCTCGTCACGACCTCTGTTACAACTTGA
CAAATGTACAGACTGGCCCCGTCGGGTGAAAGTGACGATCAGAAGGTCTA
GGTGCATTCAGATTTTTCTTCAAACACTACGCTACAGGCAGTAGTCTAAT
CATATTATTAAAAATATTAATATTTATAAAGAGCAATAGTATTAATAGTA
CAGCAGTAGAATAAAGCAGGGGATCCACTCGGGCCTTTTCACTTTTAAAA
TATATTCCATAAGAAACAGCGGTCACGTCCGGTGAAAGCAGGTTCAACAG
CGTGACGGTGGACGTTTCGAAGATCAAGGTGGAGGATACAGCCGACTTTG
CACTAAAGCTGTTCTCCACCGTTGATCTGCTTCGCAAGAACCACAAAGCC
GGTGCGAGAGCGTGCGCGTCGTATCATAACCATGCCAATCGTCCGTGGGC
CTCGCACGCTCACGTGAGACCTACCTTCCGTTTTATGTACATTCTCTACA
GTAGTATTAGTATCCGAAGTAGTGCCTACAGTAGTACATGTGCGTTGAAC
TTTAGCACGGCGTCCGCGTTAGTTTTTAATCGATTGGGCCTCAAATATAC
TGTATACATACGCTACGTCTGCACGCGTTTTCCAACCCAGCTGTGTCGTC
TGCCAAAACAGTAAAGGGGCATTGCGTCTCTCTCATGTCGTCTCGAACGG
CCGTGTCCTTTTCTAGCACTCATTGAAGTCAAGAACCCTCTTTACAGCCA
GTTGAAACAAGCGCATCGCCGCTCTGCCGCAACGTCAAAAAAGCAAGACC
ACATTTCTCTCTCTTTCGGTGCAATTTTTTTTTTTTTTTTTTTTCACGCC
TTGTACCTCTCGCGATCACCTCGCGCCCTTGTATTTATCCACCAACTTCA
GCAATATGGCTAAAGGTACCGATGGATTTCTGCCACTACATCTCGGTGGC
AGCCCACTACGGCTTCGAGTTCCACCACACCAAACCCAAGTACTTGATGA
TGTGCTTGTGGCTACCGGAGGACGTCCCCAACAAGATTCCCACGTACGGC
ACTCACCATGTCGGCGTGGCAGGTGAGGGGGGAAAAAAAACAAAAACATT
AGAACTTTGTATAGTTTGTTGCGCGCGAAGATTGAATTCAAGGCCAATTT
TGGTGGATTTTTTTCACGCGTTCGCGTGCTCAACTCAATACGACAAAGTC
CACGGAGGGTCGGTCGTTCAAGAACCCTCTGGTAGCAAGAACAGGTGCGA
CGTGTTATTAATAATAGTCCGGCGCCGTTTGTTTTCAAAAGGTTGCAGTG
TCTGATCATCTCCGCTCTCTCTTCGGTAAGGTAATTCTCACGTTCTCTTT
CTTCCCCCGCATCAGCATTATATATTATATGTGTGTGACCATACATTATA
TGTATATTATATGCGAACCATGCACACACCACGAGCGTGACTCGCCATCG
TGATTGTAGAGGAAATGAGCTCTGGTTTTGCGACGAATACACCCGAGAGT
GATCAGCAACGACACCCCCTTTTCATTTTGTTCTTTATCAGGCTGCGTTG
TAAACCACGAGCGAGAGGTATTGTTGGTGAAGGAAAGTCACGAGAACGCC
ATGTGGAAGTTTCCAGGGGGTTTGGCAGATCCGGGGGAAGGCATCGGAGA
GGCGGCGGAGCGCGAGGTTTTTGAGGAGACAGGGGTGGAGGCCGAGTTCC
GGTCGGTGTTGAGCATGCGACACCAGCACGACATGCAGTTTGGGAACAGC
GATGCTTACTTTATCTGTCGATTGATGCCCAAGGAGGGCGGGGAGGTGCA
AATTACGAAGTGCGCCCACGAGATCACAGACGCTTGCTGGATGCCCTTGG
AGCAATTCAAGAAAGAGACGCGGCACTCCATGCTGGCCGTTGTCGCTGAC
ATCCTCGACAAGCCAGAGGACAAAGAAATGACAAGGTAGGTACAAGGTCA
AATCCTAGAGGTTTTCCCCTCGAGGCGTCCCTTAACGTACTATACAATGC
AGAGTATTCCGCGTCAGAGAAGGCGGAATCAGTGGTGACTGGCCAGGCAC
GCCGAGCCTCGTCTTGCGCGACCCCCAAGGTCTTACGAACTGTTTATACT
ATTAATACAGGAGAGCGCTGTCCGCCTTCCGTTCCTAGTTTCTTACCTCC
GGGTGGGGCCACGAGGCATCGTAGAGTTTGCTGTAGTATACTGAGCAAGA
GTGGTACCATCGGCCTACTATTGGCCTGCTCGTTTCTCGGGCCGTTGAAT
CATCCCGTACTAAACTTCGTCCGTTGCCGCGGCCGCAAACATTTCTCAGG
AGCCTCCACGAGTCGGTGGTTCCCGGCCGGAAGCCCTACTATCTCTACCA
TCGCGACACATGAACATGGAGCATGAAATGGGACGTCGAGCCTGGAGCAT
AAACTATTTTGCAATATAGAAGTATACCTTTGCGAAGCGTGCGTGTGTGA
ATATTGTGCTTCACCCACCGTGAGGGTCACTTTACAACGTTGATGGTATG
ATTTCGAAGTTATTGATGTCGTGGGAGCGTCCTCTTTAGTAGCGACATTA
TTTCGAATCCAATCCCGTGAGAGCGTCAGCTTGATACTTCACTACTTCAC
TACTTCAGTATTTTATTAAAAAAAGAAGTACCGTGTGTTCCAACATTTTA
CACAACGCCCTGAAGTGTGTTTTTTGTTGTTTTTTACCACATATGGTAGT
CTATATGCCGACACACTTACACTATGCTAGAAAAAATATTGAATATGGCT
CTTGCGCAAGATTCCAAAAAGCCGATGTGCAACCGAAAAAGCACTTACCA
GGTACTTTCTAGTGACAGAGGAGACAAAAGACTATGACAGCGGAGGAGGA
GGGGGACGGAGGGAAGCGTAGAAAGGGCGCTATTATAGTCTAGAATTAGT
AGTAGTAGTAATAGCGAGTAAGCAGCCTGTCCATTTGTTTTGTTTGTTTT
TTTGGCTTTCTTTTGTTTACTTTTCCCCATTTTTTATTTTTGCGGCCTTG
ATTTACCTCCACTTGGAGGGCTTCTTTGCTCATGAACGGGTTTGACCTGA
CCGCTTGCCTCGAGTCAAACCTACTTTTGTCTTTATCTCGTATCTTGTCG
GTTGTAGCATCAGGGACCATCCGTGCTATACCCGACCACCCTCACACCCT
AAAGTTCTGGGTGTAAGGGAGGGTGTTTGCCTGGTTGGTGAGAAATTCGA
CGAAAAGCTCCCCGGCATAGTAGGGGGGCGTGGAGATACTGTCTAGGACG
GAATGTACTATCTTGCATGGTGTGCGTGGTTGATTTTGTTTGCCCCTCTC
ACAGCTCCAGGGTGTTGAGTGGGGATGGCCTGGTCGGCGGGAACCCGACG
ACGAACACCCCTCGGCGTAGGGGAGGAGGGATAGCTTCTCCTTCAAATTA
AATTTTACTTCTCTTGGTACTCCTACTATATTAATAGTATATTTGGTTTG
TGACTCAGCTTCCGAGTTGGAGCGATGGACTCTACTTCCTTTTTGGGGTT
TTCCTGCCCTAACCTGCTGCATGTTTTTCTGAACTTGTTGTTTTTAGGAA
CCCGTTACATATTTTTTCGCAAGTGTTGGGACTTTCTATGTGTCTTTATT
ATTTTATTTTTTTATGTACCTTATCTTGGGTTATTAGCTTATGGCCACGG
TAAAATTCGTTTCTTTGCCTTGAAGAGTAAGAGGGAGAAGGTACTGGATA
GAGGTCAGAACGGTTTTTGATGTGAAGACAACAGCAACAGCAACTATTAA
TAAACATAATATCCATGGTATGAGTCAGTTTCAAACAGATCACCTGGTAT
TAATAGTATCTGGTAGTATCTGGTAACTTGCACCCAAGAAGAGGTGATAT
GACTTTATGTACGTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig114:237950..243065-

>mRNA_F-serratus_M_contig114.1213.1 ID=mRNA_F-serratus_M_contig114.1213.1|Name=mRNA_F-serratus_M_contig114.1213.1|organism=Fucus serratus male|type=CDS|length=1968bp|location=Sequence derived from alignment at F-serratus_M_contig114:237950..243065- (Fucus serratus male)
ATGTCATTAAAATTGGGTACTACTATCGTACGGTCTATCGGTGGCTCCTT
TCAATACTGTGGGCCAAACACCGTAAATGCGGCAGCCGCAAGTTCATCGA
GGCGGACAAGTTGCTCAACTAGAAACAGGAACATAATCTCTTCAGAAGCA
AGAGCAAGTATTACGTTGTTTCAGCAGCGATTCGCTTCCACAACAATCAC
CACAAGGGCTGGGCTGCCCTTGCCTCTTCATTACGAGGAGTCAAAATGTC
ATTAAAATTGGGTACTACTATCGTACGGTCTATCGGTGGCTCCTTTCAAT
ACTGTGGGCCAAACACCGTAAATGCGGCAGCCGCAAGTTCATCGAGGCGG
ACAAGTTGCTCAACTAGAAACAGGAACATAATCTCTTCAGAAGCAAGAGC
AAGTATTACGTTGTTTCAGCAGCGATTCGCTTCCACAACAATCACCACAA
GGGCTGGGCTGCCCTTGCCTCTTCATTACGAGGAGTCAAAGTTCAACAGC
GTGACGGTGGACGTTTCGAAGATCAAGGTGGAGGATACAGCCGACTTTGC
ACTAAAGCTGTTCTCCACCGTTGATCTGCTTCGCAAGAACCACAAAGCCG
GTTCAACAGCGTGACGGTGGACGTTTCGAAGATCAAGGTGGAGGATACAG
CCGACTTTGCACTAAAGCTGTTCTCCACCGTTGATCTGCTTCGCAAGAAC
CACAAAGCCGCAATATGGCTAAAGGTACCGATGGATTTCTGCCACTACAT
CTCGGTGGCAGCCCACTACGGCTTCGAGTTCCACCACACCAAACCCAAGT
ACTTGATGATGTGCTTGTGGCTACCGGAGGACGTCCCCAACAAGATTCCC
ACGTACGGCACTCACCATGTCGGCGTGGCAGCAATATGGCTAAAGGTACC
GATGGATTTCTGCCACTACATCTCGGTGGCAGCCCACTACGGCTTCGAGT
TCCACCACACCAAACCCAAGTACTTGATGATGTGCTTGTGGCTACCGGAG
GACGTCCCCAACAAGATTCCCACGTACGGCACTCACCATGTCGGCGTGGC
AGGCTGCGTTGTAAACCACGAGCGAGAGGTATTGTTGGTGAAGGAAAGTC
ACGAGAACGCCATGTGGAAGTTTCCAGGGGGTTTGGCAGATCCGGGGGAA
GGCATCGGAGAGGCGGCGGAGCGCGAGGTTTTTGAGGAGACAGGGGTGGA
GGCCGAGTTCCGGTCGGTGTTGAGCATGCGACACCAGCACGACATGCAGT
TTGGGAACAGCGATGCTTACTTTATCTGTCGATTGATGCCCAAGGAGGGC
GGGGAGGTGCAAATTACGAAGTGCGCCCACGAGATCACAGACGCTTGCTG
GATGCCCTTGGAGCAATTCAAGAAAGAGACGCGGCACTCCATGCTGGCCG
TTGTCGCTGACATCCTCGACAAGCCAGAGGACAAAGAAATGACAAGGCTG
CGTTGTAAACCACGAGCGAGAGGTATTGTTGGTGAAGGAAAGTCACGAGA
ACGCCATGTGGAAGTTTCCAGGGGGTTTGGCAGATCCGGGGGAAGGCATC
GGAGAGGCGGCGGAGCGCGAGGTTTTTGAGGAGACAGGGGTGGAGGCCGA
GTTCCGGTCGGTGTTGAGCATGCGACACCAGCACGACATGCAGTTTGGGA
ACAGCGATGCTTACTTTATCTGTCGATTGATGCCCAAGGAGGGCGGGGAG
GTGCAAATTACGAAGTGCGCCCACGAGATCACAGACGCTTGCTGGATGCC
CTTGGAGCAATTCAAGAAAGAGACGCGGCACTCCATGCTGGCCGTTGTCG
CTGACATCCTCGACAAGCCAGAGGACAAAGAAATGACAAGGAGCCTCCAC
GAGTCGGTGGTTCCCGGCCGGAAGCCCTACTATCTCTACCATCGCGACAC
ATGAGAGCCTCCACGAGTCGGTGGTTCCCGGCCGGAAGCCCTACTATCTC
TACCATCGCGACACATGA
back to top