mRNA_F-serratus_M_contig1138.1203.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1138.1203.1
Unique NamemRNA_F-serratus_M_contig1138.1203.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1138.1203.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-9
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:  113 GTGDPPWRATWEEGFEKEGALGGGLLMSLSAMEEYEGKSHEECRLEDYAQNRKNNLVV-GGGSLDGATPKS 322
            GTG+P WR T  E    +     G+L S+SAM+EYEGKSHEE R+EDY  NRKN+L V  G +  GA P S
Sbjct:  214 GTGNPAWRETRAEDPTGKAGANPGMLQSISAMKEYEGKSHEELRVEDYLLNRKNSLAVTAGATAAGAAPSS 284
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BLAST of mRNA_F-serratus_M_contig1138.1203.1 vs. uniprot
Match: A0A4D6NBI0_VIGUN (Nuclear pore complex protein n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NBI0_VIGUN)

HSP 1 Score: 62.0 bits (149), Expect = 1.490e-6
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 2 
Query:  365 KRRGTENPAWQATPTRDGIGSSVSMSKIMSISAMWDYRDESHEELRLQDYMANTRGCSAKGRNDPDWQETETGAFGFVYPFLMSISAMAAYQSKSHEELRLED 673
            ++RG    A     T     +SV  +K+ SISAM  Y  +SHEELRL+DY+ +  G +          E ++G  G + P L SISAM  Y+ KSHEELR ED
Sbjct:  148 QQRGGSRVASYTATTEAYSRTSVHTAKLESISAMPVYELKSHEELRLEDYVGDKGGSTVASYAATI--EADSGTSGRI-PKLESISAMPVYELKSHEELRWED 247
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BLAST of mRNA_F-serratus_M_contig1138.1203.1 vs. uniprot
Match: A0A5J9UC52_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UC52_9POAL)

HSP 1 Score: 60.8 bits (146), Expect = 2.080e-6
Identity = 38/90 (42.22%), Postives = 47/90 (52.22%), Query Frame = 2 
Query:  446 IMSISAMWDYRDESHEELRLQDYMANTRGCSAKGRNDPDWQET------ETGAF-------GFVYPFLMSISAMAAYQSKSHEELRLEDY 676
              SISAM  Y ++SHEELR +DY    +G   KG     +++T      E G+        G    +  SISAM  Y SKSHEELR EDY
Sbjct:   70 FQSISAMTVYSNKSHEELRHEDYQIQNKGLPGKGSRVSPYKKTADDPCNEAGSSASKKKEAGSPNWYFQSISAMPVYSSKSHEELRYEDY 159
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1138.1203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE1.470e-953.52Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
A0A4D6NBI0_VIGUN1.490e-641.75Nuclear pore complex protein n=2 Tax=Vigna unguicu... [more]
A0A5J9UC52_9POAL2.080e-642.22Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1138contigF-serratus_M_contig1138:275635..279671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1735
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1138.1203.1prot_F-serratus_M_contig1138.1203.1Fucus serratus malepolypeptideF-serratus_M_contig1138 275825..278897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929038.4823587-UTR-F-serratus_M_contig1138:275634..2758241622929038.4823587-UTR-F-serratus_M_contig1138:275634..275824Fucus serratus maleUTRF-serratus_M_contig1138 275635..275824 +
1690962677.7106595-UTR-F-serratus_M_contig1138:275634..2758241690962677.7106595-UTR-F-serratus_M_contig1138:275634..275824Fucus serratus maleUTRF-serratus_M_contig1138 275635..275824 +
1622929039.0028992-UTR-F-serratus_M_contig1138:278897..2796711622929039.0028992-UTR-F-serratus_M_contig1138:278897..279671Fucus serratus maleUTRF-serratus_M_contig1138 278898..279671 +
1690962677.7839575-UTR-F-serratus_M_contig1138:278897..2796711690962677.7839575-UTR-F-serratus_M_contig1138:278897..279671Fucus serratus maleUTRF-serratus_M_contig1138 278898..279671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929038.5051522-CDS-F-serratus_M_contig1138:275824..2758451622929038.5051522-CDS-F-serratus_M_contig1138:275824..275845Fucus serratus maleCDSF-serratus_M_contig1138 275825..275845 +
1690962677.7205126-CDS-F-serratus_M_contig1138:275824..2758451690962677.7205126-CDS-F-serratus_M_contig1138:275824..275845Fucus serratus maleCDSF-serratus_M_contig1138 275825..275845 +
1622929038.9172232-CDS-F-serratus_M_contig1138:276057..2761331622929038.9172232-CDS-F-serratus_M_contig1138:276057..276133Fucus serratus maleCDSF-serratus_M_contig1138 276058..276133 +
1690962677.7284214-CDS-F-serratus_M_contig1138:276057..2761331690962677.7284214-CDS-F-serratus_M_contig1138:276057..276133Fucus serratus maleCDSF-serratus_M_contig1138 276058..276133 +
1622929038.9276905-CDS-F-serratus_M_contig1138:276329..2765111622929038.9276905-CDS-F-serratus_M_contig1138:276329..276511Fucus serratus maleCDSF-serratus_M_contig1138 276330..276511 +
1690962677.7380204-CDS-F-serratus_M_contig1138:276329..2765111690962677.7380204-CDS-F-serratus_M_contig1138:276329..276511Fucus serratus maleCDSF-serratus_M_contig1138 276330..276511 +
1622929038.9410021-CDS-F-serratus_M_contig1138:276884..2769601622929038.9410021-CDS-F-serratus_M_contig1138:276884..276960Fucus serratus maleCDSF-serratus_M_contig1138 276885..276960 +
1690962677.7471514-CDS-F-serratus_M_contig1138:276884..2769601690962677.7471514-CDS-F-serratus_M_contig1138:276884..276960Fucus serratus maleCDSF-serratus_M_contig1138 276885..276960 +
1622929038.9531674-CDS-F-serratus_M_contig1138:277162..2772481622929038.9531674-CDS-F-serratus_M_contig1138:277162..277248Fucus serratus maleCDSF-serratus_M_contig1138 277163..277248 +
1690962677.754625-CDS-F-serratus_M_contig1138:277162..2772481690962677.754625-CDS-F-serratus_M_contig1138:277162..277248Fucus serratus maleCDSF-serratus_M_contig1138 277163..277248 +
1622929038.967534-CDS-F-serratus_M_contig1138:277796..2778841622929038.967534-CDS-F-serratus_M_contig1138:277796..277884Fucus serratus maleCDSF-serratus_M_contig1138 277797..277884 +
1690962677.7621217-CDS-F-serratus_M_contig1138:277796..2778841690962677.7621217-CDS-F-serratus_M_contig1138:277796..277884Fucus serratus maleCDSF-serratus_M_contig1138 277797..277884 +
1622929038.9804077-CDS-F-serratus_M_contig1138:278038..2782171622929038.9804077-CDS-F-serratus_M_contig1138:278038..278217Fucus serratus maleCDSF-serratus_M_contig1138 278039..278217 +
1690962677.7693841-CDS-F-serratus_M_contig1138:278038..2782171690962677.7693841-CDS-F-serratus_M_contig1138:278038..278217Fucus serratus maleCDSF-serratus_M_contig1138 278039..278217 +
1622929038.9928114-CDS-F-serratus_M_contig1138:278834..2788971622929038.9928114-CDS-F-serratus_M_contig1138:278834..278897Fucus serratus maleCDSF-serratus_M_contig1138 278835..278897 +
1690962677.776768-CDS-F-serratus_M_contig1138:278834..2788971690962677.776768-CDS-F-serratus_M_contig1138:278834..278897Fucus serratus maleCDSF-serratus_M_contig1138 278835..278897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1138.1203.1

>prot_F-serratus_M_contig1138.1203.1 ID=prot_F-serratus_M_contig1138.1203.1|Name=mRNA_F-serratus_M_contig1138.1203.1|organism=Fucus serratus male|type=polypeptide|length=257bp
MSLSAMEEYEGKSHEECRLEDYAQNRKNNLVVGGGSLDGATPKSLPVVVD
GFVFAVPSKRRGTENPAWQATPTRDGIGSSVSMSKIMSISAMWDYRDESH
EELRLQDYMANTRGCSAKGRNDPDWQETETGAFGFVYPFLMSISAMAAYQ
SKSHEELRLEDYLKSREECSTDAPSQGSSSSVPEALTTTTPAAKSSLKSA
VPPQQKGTEDPAWQPVLMEVKPTISVEVLMSISAMQEYANKSHEELRLEY
YLQNRK*
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mRNA from alignment at F-serratus_M_contig1138:275635..279671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1138.1203.1 ID=mRNA_F-serratus_M_contig1138.1203.1|Name=mRNA_F-serratus_M_contig1138.1203.1|organism=Fucus serratus male|type=mRNA|length=4037bp|location=Sequence derived from alignment at F-serratus_M_contig1138:275635..279671+ (Fucus serratus male)
TCCAGACCGCTGTACCACTTGCGGTGGCTCTTTACCTCGCGCGAATGTTT
CGTCCGAGGGCCTTAACCCCGCCGGTTTCGGTGGACAGGGGGAAGAAGGT
TGGAGGGACCTCGGCACGGGGGACCCGCCATGGCGAGCGACTTGGGAGGA
AGGCTTCGAGAAGGAGGGGGCGCTTGGTGGGGGGCTGCTGATGTCCTTGT
CTGCCATGGAGGTGAAAGGGATCGGCCAAAACCGAAAGGCTTACCTTGTT
TGGTCGCTGCCACGATTCATCTGCCCGATGAGCGAAGTGTTACAAGCGCC
AGGACACGATGAATTTGTGTTTTTTTTATTCGCCCCGACTCTCCTCGCTC
CTCCTCAACCCCATCCCGACTCCGCGTTCGATTGTAAGACGCCCTAACTT
ATTAAAGTTTTCTGGTCCCGCAGGAGTACGAGGGCAAAAGCCACGAGGAA
TGCCGCCTGGAGGACTACGCCCAGAATCGCAAGAACAATTTGGTCGTTGG
TGCGTTTGAACGATTACTATTTCCTATTGGAAGGGCTGGCGAGCCGAAGC
GCGGCGCGTTACCCGATCGGGGGACAGCGTGTCAAAGTTTTCCACGTGCT
TTTTTGGCGTCCGCCGTGTGGTATCCTTCGCCAATGTGTTGTTCTGGTTG
AGAAGAGACCCCACCCGCGTGCCCGACCGATAAAATACGGATCAGGTGGT
GGTTCCCTCGACGGCGCCACTCCCAAGAGTCTCCCTGTCGTTGTTGACGG
CTTTGTGTTCGCGGTGCCTTCGAAGCGCCGGGGGACCGAGAACCCGGCGT
GGCAAGCGACTCCGACTCGAGATGGGATCGGTTCAAGCGTATCCATGTCG
AAGATTATGTCGATCTCTGCAATGTGGGTGAGCCTACCGGTAATGCTGGG
GGAAGGGTTGCATAACTCTGTAAGACATTGCGTGATTTCGTACACTTCAA
GCCGCCCATCATGCTCCTCGGCGGACTTGGCACACGTGCGTGGTCGCGAT
CGTGAGTTCGAAATCGAGGAAGGCGTTTTTATGACAAAATACGATAAAAG
CCGCCACGAGTGCTCGCACGTACACACAGTGCTTTCCCATCACGGCCAAG
CACGACCTCACGCGCTTCCGACAGTTTTCTCTCCATGTCTTGCGCTAATA
GTATGCTGTATCATTGATATACACCGTTAGATATATTGCAAGCTCTCTCT
TATTTTTTCCCTCTGAATCCAAACGAAACGTCCCTTCCGCGGGAGCGCAG
GACTACAGAGACGAGAGCCACGAGGAGCTTCGGCTGCAGGACTACATGGC
GAACACCCGGGGCTGCTCGGCCAAGGGTACACCACCGAACGTGTCTCTAG
AACTCGATTTTCTCATTCCGTAGCAACCCTTGCATGCCGTGCTGTACGCC
GCGCGAAGCTGCTTAAGAAAAAAAGTAAACAAACAAACAAGCAATCGCCG
ACTGCAGGGAAGAGGGCTAACCATTTTTGTTTTGACGCCGAAACACCCTG
CGGCGCTGGGTTCTTGTTTGTCGGCCAGGCAGGAACGATCCGGATTGGCA
AGAAACGGAAACGGGAGCTTTTGGTTTCGTTTACCCTTTCTTGATGTCAA
TATCTGCCATGGCGGTGAGGTCCTGCGCCGGAGAAATCATTTTTTTTCAC
TGCTCGCCTGTTTTAACGTCAGGATAAGAGGGCAAGAGTGTTTGTGGAGG
AGGGGGAGCTTGAGTGGAATCTGTTGCTGCTGAAAGAGCCTGTTTTCAGT
ACGAACCTCCCTTTCTCGTAACCTTCGCAATACTAGTTGTTGTGTCGTCA
ACCTTTATTTATACCACAGCAGTAACCTATTTTTTTCTTCGAGATACAGC
GCTCTTGCGTACGGTATACTTTCGCACCAGGATCGAACCAAACAAGCTTT
TTCCAAGGGTGTGACCCCAAAGACTCCACGCAGGCCCGAAGAGCAAAGAC
AAAACAAAACAGATTGGCGTTTCCAGTGTTCCCCTCTGACTCTTCACGTT
ACCCTGACATTCTGTCCAGCCGCCGGGATTCGAGTTGAACTTATGCCCTT
TTTTTCCCTCGCTCCGTGGTTCGCGTTTTTCAACACTCTAATGCTGCGCG
TCGTTACTGCATACAACGCGCTTTTCAATCCGTAACGCTGTCCTTCTCCC
TTATGAAGTCAGGCCTACCAGAGCAAGAGCCACGAGGAACTAAGGCTTGA
GGACTATCTCAAAAGCCGCGAGGAATGCTCGACAGACGCACCGTCACAAG
GTAGCGCGGTAGTGTGTGCAACCACGAGCTCCCGTCCCTAGATGCTGAAC
ACCGTGTCCCGTAGTTCTTGGTAAAGGCGCTCCTCGTGGAATGAAATGTG
CGCGCTTTTGAGCTTCAGCCGCGCGACGTGCCGAATTCAATCGCTTTCAA
CCAGGCAGCAGCTCTAGCGTTCCCGAGGCGTTGACGACGACAACTCCCGC
CGCAAAGAGTAGCCTTAAGAGCGCGGTGCCACCCCAGCAGAAGGGCACGG
AGGACCCCGCGTGGCAACCGGTACTGATGGAAGTAAAACCGACCATATCT
GTCGAAGTACTCATGTCTATCTCGGCCATGCAGGTGAACGGAAAACCCCG
CGTTCTCGTCCTTGCAGCTGTCGGTGGCTACCAGCTGACTTGTAACCCCT
ACGCGGGCGAGTGTAGATACAGTATATTCAAATGATGCGGAGAGCTATCT
TGAACTTGAAACACCAATAAATAGGCTCTTTCCCGACCAAACGAGGCTGT
TTACCCTTTTGACGATGACCCTGAGCTGTCATGGATCGCTTTTTGTGAGC
CTAAAAGGCCGCCGCAGAATCCGTGAAAGCGATCTACAGTAAGAGTGGTC
ACAGTTGCGAAGGAAGCCGTCGGCAGTGGCGATCGCCTCTCGTTGAAGGA
ATGCTCTCGGTGTTCTGGGAGGAGGGGGGTTCCACACACTCCCAGTTAAG
GATAACAGTCTCGATTACTTGGCCAACAACACGAGCGCCCTCTCTCCACG
AAGATAACTTTTTAATAGTGGTACGATGTTTTGGCTTGCTCTTGATTTTT
CGTCCGAATAGCACGCCCGTTCCGGTCTCCGCTTCAAAGCATCTCCTGTT
TTTATGTGGGCCTAATGTCACTCATTAAAGGACGGTGTGTAACGTCCAAC
ATGGTGCCGCGTGTTCCGCGACCATCGTCCGCTTGCGTTGGCATCCACAG
GAGTACGCCAACAAGAGCCACGAGGAACTTCGACTCGAGTACTATCTCCA
GAACCGCAAGTAAACGCCATCAGTCGATCACACGGAGCGCTCTCAACGGG
CGAGGGCGGTGGTTTTGCTGGAGCTGGCAATGCTGTCGTCTTTTCGTGAT
CTGGGATCAATTGGCAATCGTCGCGGGGTCGAGGAGCTATGGTGTTCCCG
CAGAGAGGTCGGGGATTTATGTTGCTCCCCGCAGAGGTCGGGCAACGCGC
ACATCCCAGCGAAGGAGAATCGGTCGATTCACGCGAAGGCCGAGCTTTCG
TGGTCGGCCGCTGTGTCGAGGCGATGCTTACGTGAAAGTTCGGCGTCGGT
TTTGATGAGACCTCGTTCCCTGCCAGTTCTTTCGGTGACGCTCACTGACG
CGAGAAGTATATCCCGAGCTGAACGACCGGTCGATAAACGCGGTGCTCCA
GTATATTTATTTCTAGCTATTTAGCGCGAAGGTGGTGAATGCGTACAGCG
AGCAGCAGAGTCTACAACGATTAAAGTGAGTTGGTCGGAAGGAAGGCTTG
ACCAGTGAGGGTTGCTATCCTGGCAACTGTTGCACGCACTGCCTGCTTCT
ACTTTCCGTGCTTTTGAGTCGTCGAGCTTTCTATCGTCAATTCCCATGTT
ATGCTCCTGCTCTTCATACTTTAGCTATTGTAATAGAGAGAGGAAAAACG
TTTCATAATTGTTTCTCGGCGTTTCTTTCGCTCGTGTCGTTTCTTGTCCT
TCAATCGCCGCGACAAAAAAGTAGATATGGGACAAACGACCTGATCGGTG
CTTGACAAGTGTGGCCAAAGGTCACAGCAAACCGACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1138:275635..279671+

>mRNA_F-serratus_M_contig1138.1203.1 ID=mRNA_F-serratus_M_contig1138.1203.1|Name=mRNA_F-serratus_M_contig1138.1203.1|organism=Fucus serratus male|type=CDS|length=1542bp|location=Sequence derived from alignment at F-serratus_M_contig1138:275635..279671+ (Fucus serratus male)
ATGTCCTTGTCTGCCATGGAGATGTCCTTGTCTGCCATGGAGGAGTACGA
GGGCAAAAGCCACGAGGAATGCCGCCTGGAGGACTACGCCCAGAATCGCA
AGAACAATTTGGTCGTTGGAGTACGAGGGCAAAAGCCACGAGGAATGCCG
CCTGGAGGACTACGCCCAGAATCGCAAGAACAATTTGGTCGTTGGTGGTG
GTTCCCTCGACGGCGCCACTCCCAAGAGTCTCCCTGTCGTTGTTGACGGC
TTTGTGTTCGCGGTGCCTTCGAAGCGCCGGGGGACCGAGAACCCGGCGTG
GCAAGCGACTCCGACTCGAGATGGGATCGGTTCAAGCGTATCCATGTCGA
AGATTATGTCGATCTCTGCAATGTGGGTGGTGGTTCCCTCGACGGCGCCA
CTCCCAAGAGTCTCCCTGTCGTTGTTGACGGCTTTGTGTTCGCGGTGCCT
TCGAAGCGCCGGGGGACCGAGAACCCGGCGTGGCAAGCGACTCCGACTCG
AGATGGGATCGGTTCAAGCGTATCCATGTCGAAGATTATGTCGATCTCTG
CAATGTGGGACTACAGAGACGAGAGCCACGAGGAGCTTCGGCTGCAGGAC
TACATGGCGAACACCCGGGGCTGCTCGGCCAAGGGACTACAGAGACGAGA
GCCACGAGGAGCTTCGGCTGCAGGACTACATGGCGAACACCCGGGGCTGC
TCGGCCAAGGGCAGGAACGATCCGGATTGGCAAGAAACGGAAACGGGAGC
TTTTGGTTTCGTTTACCCTTTCTTGATGTCAATATCTGCCATGGCGGCAG
GAACGATCCGGATTGGCAAGAAACGGAAACGGGAGCTTTTGGTTTCGTTT
ACCCTTTCTTGATGTCAATATCTGCCATGGCGGCCTACCAGAGCAAGAGC
CACGAGGAACTAAGGCTTGAGGACTATCTCAAAAGCCGCGAGGAATGCTC
GACAGACGCACCGTCACAAGGCCTACCAGAGCAAGAGCCACGAGGAACTA
AGGCTTGAGGACTATCTCAAAAGCCGCGAGGAATGCTCGACAGACGCACC
GTCACAAGGCAGCAGCTCTAGCGTTCCCGAGGCGTTGACGACGACAACTC
CCGCCGCAAAGAGTAGCCTTAAGAGCGCGGTGCCACCCCAGCAGAAGGGC
ACGGAGGACCCCGCGTGGCAACCGGTACTGATGGAAGTAAAACCGACCAT
ATCTGTCGAAGTACTCATGTCTATCTCGGCCATGCAGGCAGCAGCTCTAG
CGTTCCCGAGGCGTTGACGACGACAACTCCCGCCGCAAAGAGTAGCCTTA
AGAGCGCGGTGCCACCCCAGCAGAAGGGCACGGAGGACCCCGCGTGGCAA
CCGGTACTGATGGAAGTAAAACCGACCATATCTGTCGAAGTACTCATGTC
TATCTCGGCCATGCAGGAGTACGCCAACAAGAGCCACGAGGAACTTCGAC
TCGAGTACTATCTCCAGAACCGCAAGTAAGAGTACGCCAACAAGAGCCAC
GAGGAACTTCGACTCGAGTACTATCTCCAGAACCGCAAGTAA
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