mRNA_F-serratus_M_contig1138.1200.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: D8LJQ1_ECTSI (Polyprenol reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJQ1_ECTSI) HSP 1 Score: 329 bits (844), Expect = 6.170e-105 Identity = 169/300 (56.33%), Postives = 216/300 (72.00%), Query Frame = 1
Query: 1 RLRPLAEHGKTMRPGGTRASAGDRVPPLRWLRAGVSKKSFTHFYAFGLLTATAALGDILFYGGSLFTARIQEHSVCSRIAARDDRVKKLGVESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGVW 900
RL + HGK +RPG + S PLRWL+ V K+ F+HFY F L+++ D + YGGSLF +Q SVCSR+A R D+V +LGVESL+CL+LL RRLWECV V+ WG+SRM+ AGY G+V YQL++ TVLVEAPPLG+L ++A +SG S + + A+ ++K+RHAVA+G F +G RQHEAI+HLASL+ VG K + YA+PTAGWF+YVSCPHYFAELL+Y SF+LL G+GLGQGY+VA +VFA+QA VAG AWY KFEDYPRDR+RL+PGVW
Sbjct: 27 RLYSIFLHGK-LRPGASTTSEAGF--PLRWLKVEVPKRLFSHFYFFCLVSSALVFIDTILYGGSLFVGSVQGKSVCSRVAGRSDQVLELGVESLLCLLLLNLHAARRLWECVMVSSWGSSRMSLAGYAAGVVHYQLMVFTVLVEAPPLGLLAEEAWSRSSGGASDIVL--ALATSVKLRHAVAMGLFIIGFVRQHEAIRHLASLKGNVG---TKATKYAIPTAGWFRYVSCPHYFAELLVYGSFVLLGSFKGRGLGQGYLVAFAWVFANQALVAGWVQAWYQQKFEDYPRDRRRLIPGVW 318
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: A0A835Z372_9STRA (Polyprenol reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z372_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.130e-30 Identity = 97/300 (32.33%), Postives = 148/300 (49.33%), Query Frame = 1
Query: 4 LRPLAEHGKTMRPGGTRASAGDRVPPLRWLRAGVSKKSFTHFYAFGLLTATAALGDILFYGGSLFTARIQ-EHSVCSRIAARDDRVKKLGVESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGVW 900
L ++EHGK + +G + W R V K+ F HFY G + T + ++ + +HS A+ + +L + LV +L A L RR+ EC+ V RWG +RM A Y VGI Y L T+ VE P D++ S + V + A + + + F +A Q+ A +HLASL+ + G+ T+SY +PTAG F VSCPHYF E+ +Y SF+++ G G V+ +++V + + A HAWY + +DYP R+RLVP +W
Sbjct: 28 LESMSEHGKLL--------SGSGGTAIWWQRLSVPKRLFAHFYVAGFVFVTMV---VAWHSPQARACLLPTQHSP----ASMNTGTCRLKSDVLVVALLFQAHLARRVCECLYVHRWGRARMHAAAYAVGIAHYALAAFTLAVELPAGA----DSKQVTSHKDTPVGIIIAQLAGVLL--------FLAANAGQNAAHRHLASLKPDTRAGT-DTASYRIPTAGLFSEVSCPHYFWEIALYASFVMITG----GQVCSVVLMLVWVITNLSINAAHMHAWYWSHLKDYPVRRRRLVPFLW 295
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: UPI001FAF9485 (polyprenol reductase n=3 Tax=Pleuronectoidei TaxID=30942 RepID=UPI001FAF9485) HSP 1 Score: 115 bits (288), Expect = 9.600e-25 Identity = 92/286 (32.17%), Postives = 135/286 (47.20%), Query Frame = 1
Query: 88 WLRA-GVSKKSFTHFYAFGLLTATAALGDILFYGGSLFTARI----QEHSV----------CSRIAARDDRVKKLGVESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGVW 900
WLR V K+ F HFYA + + G L T + Q HS+ S + D +V +L +L+ +LL RRL EC+ V+ + M Y+ G+ +Y +L LTVL G K +++ L H G F S QH+++ LA LRT GS +T ++ +PT GWF+ VSCPHYF+ELLIY+S ++ G GL + + +L+V +QA A H Y++K+E YPR RK +P V+
Sbjct: 61 WLRVFDVPKRCFWHFYAVSVC-----------WNGFLLTLYLNFTFQHHSLPSWLTGTLDLLSGVRGADSQVPQLS--TLLVQLLLWLHSLRRLLECLCVSVFSDGAMHVLQYVFGLGYYIVLGLTVL------------------GSDHGGKAAGSLLSQLSWFHVAGFGFFIAASLLQHQSMVLLARLRTGKS-GSVETLAHRVPTGGWFELVSCPHYFSELLIYISLAVVYG----GLSFTWWLVVLYVLFNQALAAQLCHELYISKYESYPRHRKAFIPFVF 310
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: A0A672HLK5_SALFA (Polyprenol reductase n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HLK5_SALFA) HSP 1 Score: 114 bits (285), Expect = 2.550e-24 Identity = 89/278 (32.01%), Postives = 131/278 (47.12%), Query Frame = 1
Query: 85 RWLRA-GVSKKSFTHFYAFGLLTATAALGDILFYGGSLFTARIQEHSVCSRIAARDDRVKKLG--------VESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVP 891
+WLR V K+ F HFYA + L L AR HS S + A DR+ + +++ +LL RRL EC+ V+ + M Y+ G+ +Y +L LTVL P + + + + L H L F S QH++I LA LRT GS +T + +P GWF++VSCPHYFAELLIY+S L++G GL +A+L+VF +QA H Y++K++ YP+ R+ +P
Sbjct: 63 KWLRVFDVPKRWFWHFYAISVCWNGFLLALTL-------NARFDNHSYPSWLTAILDRMTAASSSHGQVPQLSTVLVQLLLCIHSLRRLLECLFVSVFSDGAMHLVQYLFGLGYYIVLGLTVLCSDP------------------AGQGRETQLADLNFLHLAGLVLFLWASKLQHQSIALLARLRTGQS-GSVETLDHKVPKGGWFEWVSCPHYFAELLIYISLSLISG----GLSFTLWLAVLYVFFNQALAGQLCHEHYVSKYDSYPKHRRAFIP 310
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: R7UW84_CAPTE (Polyprenol reductase n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UW84_CAPTE) HSP 1 Score: 113 bits (282), Expect = 5.150e-24 Identity = 86/269 (31.97%), Postives = 133/269 (49.44%), Query Frame = 1
Query: 103 VSKKSFTHFYAFGLLTATAALGDILFYGGSLFTARIQEH--SVCSRIAARDDRVKKLGVESLVCLI-LLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGVW 900
V K FTHFYA G++ AL I+ G + + ++ ++ + +D + S LI ++ Q RR EC+ V+ + S M +M+G++ Y L VL +AP L + D + GW K VAL F S H A K +LR + G +T ++ +P GWF+YVSCPHYF E+LIY +F ++AG S + ++FV+A+QA A +H WY F+DYP+ R+ L+P ++
Sbjct: 58 VPKSWFTHFYALGIVVNGLAL--IVVTGSYFYGWQPPQYLLNLLRYLRDKDSSNEDTCAFSACVLIGMMFVQNLRRYLECIFVSVYSKSTMNLIHFMLGVILYSTFHLAVLCDAPSL-LSNPDLKKENPGW--------------KCFFGVAL--FVWSSWHHHTAHKTFGNLRKD-NQGQVRTLTHHIPRGGWFEYVSCPHYFMEVLIYTAFGMVAGFSNLTVWS----VVIFVYANQAIAARVSHNWYKDTFKDYPKQRRALIPFIF 302
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: UPI001C40D8E7 (polyprenol reductase n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C40D8E7) HSP 1 Score: 112 bits (280), Expect = 1.130e-23 Identity = 87/276 (31.52%), Postives = 136/276 (49.28%), Query Frame = 1
Query: 85 RWLRA-GVSKKSFTHFYAFGLLTA--TAALGDILFYGGSLFTARIQEHS-VCSRIAARDDRVKKLGVESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGVW 900
+WLR V K+ F FYA + + L + L + + S + S +++ D++V +L +L+ +LL RRL EC+ V+ + M Y+ G+ +Y +L LTVL VK +++ + H G F S QH++ LA LR G+ +T +Y+MP GWF+ VSCPHYFAELLIY+S L+ G GL + + +L+V +QA A H +Y++K+E YP+ RK +P V+
Sbjct: 61 KWLRVFDVPKRWFWQFYAISVCWNGFLLVINLNLIFQHQLHLSWLSGISDILSVVSSTDNQVPQLS--TLMVQLLLWIHSLRRLLECLCVSVFSNGSMHLVQYVFGLAYYIILGLTVLFSD------------------HGVKGSGSLLLQMDWFHVAGFGLFVAASLLQHQSTVLLAKLRMGKS-GTVETLAYSMPKGGWFELVSCPHYFAELLIYISLSLVLG----GLSLTWWLVVLYVLFNQALAAQLCHDFYVSKYELYPKHRKAFIPFVF 311
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: UPI001864DFDF (polyprenol reductase n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864DFDF) HSP 1 Score: 111 bits (277), Expect = 1.690e-23 Identity = 95/290 (32.76%), Postives = 141/290 (48.62%), Query Frame = 1
Query: 67 DRVPPLRWLRAGVSKKSFTHFYAFGLLTATAALGDILFYG--------GSLFTARIQEHSVCSRIAARDDRVKKLGVES---LVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTE-VGDGSAK---TSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVP 891
++ P W+ G + F L + T D++ YG G+L + + C I A + + LGV + LV ++L T L RRLWECV V+ + + Y+ G+ +Y +L LTVL DA +G +S + Q L+ HA + F S QH ++ LA LRTE G+ SA T + +P GWF+ VSCPHYFAELLIY+S G + +G + + +L+VF +QA A H +Y ++F+ YP+ RK VP
Sbjct: 21 EQTPSAMWISIGGRAEVF-------LYSCTKVFQDLIRYGKTKNLQRPGALRVFDVPKR--CCAIPAWVEGYEVLGVSASAVLVQVLLWTHSL-RRLWECVRVSVFSDGVIHAVQYVFGLGYYVILGLTVLCA---------DALHPQTGGPASSLLSQ-----LQWFHAAGVLLFLWASLHQHRCLRLLAQLRTENSGEASAGELVTLGHKVPHGGWFEVVSCPHYFAELLIYVSL----GITCRGGALTWWLVVLYVFFNQALAAQLCHEFYCSRFQSYPQQRKAFVP 282
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: A0A4U5ULA8_COLLU (Polyprenol reductase n=5 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5ULA8_COLLU) HSP 1 Score: 109 bits (273), Expect = 9.380e-23 Identity = 91/279 (32.62%), Postives = 137/279 (49.10%), Query Frame = 1
Query: 88 WLRA-GVSKKSFTHFYAF-----GLLTATAALGDILFYGGSLFTARIQEHSVCSRIAARDDRVKKLGVESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQ---AMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGV 897
WLR V K+ F HFYA GLL A ++ F S + + + + + D V +L +L+ +LL RRL EC+ V+ + M Y+ G+ FY +L LTVL S ++G+ +++ L + H + F S QH+++ LA LRT GS +T ++ +P GWF+ VSCPHYFAELLIY+S L+ G GL + + +L+V +QA A H Y++K+E YP+ RK +P V
Sbjct: 61 WLRRFDVPKRWFWHFYAISVGWNGLLLALYL--NLTFRHHSYPSWLRGVLDIGTGVPSADSHVPQLS--TLLVQLLLWVHSLRRLLECLFVSVFSDGAMHLVQYVFGLGFYVVLGLTVL---------------------CSDRLGKGTGSLLSQLDLFHVAGIALFIGASLMQHQSMVLLARLRTGKS-GSVETLAHRVPKGGWFELVSCPHYFAELLIYVSLSLVFG----GLSLTWWLVVLYVLFNQALAAQLCHDLYISKYESYPKHRKAFIPFV 309
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: A0A6J2PK14_COTGO (Polyprenol reductase n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2PK14_COTGO) HSP 1 Score: 109 bits (273), Expect = 1.030e-22 Identity = 94/279 (33.69%), Postives = 136/279 (48.75%), Query Frame = 1
Query: 88 WLRA-GVSKKSFTHFYAFGLLTATAALGDILFYGGSLFTARIQEH--------SVCSRIAARDDRVKKLGVESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQAMMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGV 897
WLRA V K+ F HFYA + LG FY +F R Q + + + + + D +V +L SL+ +LL RRL EC+ V+ + + Y+ G+ +Y +L LTVL + F G G + Q L H F S QH+++ LA LRT G+ +T ++ +P GWF+ VSCPHYFAELLIY+S L+ G GL + + +L+V +QA A H Y++K+E YPR RK +P V
Sbjct: 66 WLRAFDVPKRWFWHFYAISVGWNGILLG---FYLNFIF--RHQSYPSWLTGILDIVTGVPSTDSQVPQLS--SLLVQLLLFVHSLRRLLECLFVSVFSDGAIHLVQYVFGVCYYIVLGLTVLCS-----------DRFGKG------TGTLLSQ-LDWFHVAGNVLFIGASVVQHQSMVLLARLRTGKS-GTVETLAHRVPEGGWFELVSCPHYFAELLIYVSLSLVFG----GLSLTWWLVVLYVLFNQALAAQLCHELYMSKYESYPRHRKAFIPFV 314
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Match: UPI001A999447 (polyprenol reductase isoform X1 n=2 Tax=Xiphias gladius TaxID=8245 RepID=UPI001A999447) HSP 1 Score: 108 bits (271), Expect = 1.760e-22 Identity = 90/278 (32.37%), Postives = 134/278 (48.20%), Query Frame = 1
Query: 88 WLRA-GVSKKSFTHFYAF-----GLLTATAALGDILFYGGSLFTARIQEHSVCSRIAARDDRVKKLGVESLVCLILLTAQLGRRLWECVAVTRWGTSRMTFAGYMVGIVFYQLLLLTVLVEAPPLGVLVQDAELFASGWVSSVKVGQA-MMQALKIRHAVALGAFFVGSARQHEAIKHLASLRTEVGDGSAKTSSYAMPTAGWFKYVSCPHYFAELLIYLSFLLLAGTSGKGLGQGYVVAILFVFASQAYVAGQAHAWYLTKFEDYPRDRKRLVPGVW 900
WLR V K+ F HFYA GLL A + +F SL + + + + + D +V +L +L+ +LL RRL EC+ V+ + M Y+ G+ +Y + LTVL VK G ++ L H F S QH+++ LA LRT G+ +T ++ +P GWF+ VSCPHYFAELLIY+S L+ G GL + + +L+V +Q+ A H Y++K+E YPR RK +P V+
Sbjct: 62 WLRVFDVPKRWFWHFYATSVCWNGLLPALYL--NFIFQRQSLPSWLTGIIDILTGVPSTDGQVPQLS--TLLVQLLLWVHSLRRLLECLFVSVFSDGTMHLVQYVFGLGYYIAIGLTVLCS-------------------DRVKKGTGTLLSQLDWFHVAGFTLFIAASLLQHQSMLLLARLRTGKS-GTVETLTHKVPNGGWFELVSCPHYFAELLIYISLTLVFG----GLSLTWWLVVLYVLFNQSLAAQLCHDLYISKYESYPRHRKAFIPFVF 311 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1138.1200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1138.1200.1 >prot_F-serratus_M_contig1138.1200.1 ID=prot_F-serratus_M_contig1138.1200.1|Name=mRNA_F-serratus_M_contig1138.1200.1|organism=Fucus serratus male|type=polypeptide|length=290bp MRPGGTRASAGDRVPPLRWLRAGVSKKSFTHFYAFGLLTATAALGDILFYback to top mRNA from alignment at F-serratus_M_contig1138:223669..228101+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1138.1200.1 ID=mRNA_F-serratus_M_contig1138.1200.1|Name=mRNA_F-serratus_M_contig1138.1200.1|organism=Fucus serratus male|type=mRNA|length=4433bp|location=Sequence derived from alignment at F-serratus_M_contig1138:223669..228101+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1138:223669..228101+ >mRNA_F-serratus_M_contig1138.1200.1 ID=mRNA_F-serratus_M_contig1138.1200.1|Name=mRNA_F-serratus_M_contig1138.1200.1|organism=Fucus serratus male|type=CDS|length=1740bp|location=Sequence derived from alignment at F-serratus_M_contig1138:223669..228101+ (Fucus serratus male)back to top |