mRNA_F-serratus_M_contig1134.1187.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1134.1187.1
Unique NamemRNA_F-serratus_M_contig1134.1187.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1134.1187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1134contigF-serratus_M_contig1134:180033..180499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.241248-CDS-F-serratus_M_contig1134:180032..1803471622929034.241248-CDS-F-serratus_M_contig1134:180032..180347Fucus serratus maleCDSF-serratus_M_contig1134 180033..180347 +
1690962675.499928-CDS-F-serratus_M_contig1134:180032..1803471690962675.499928-CDS-F-serratus_M_contig1134:180032..180347Fucus serratus maleCDSF-serratus_M_contig1134 180033..180347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.256008-UTR-F-serratus_M_contig1134:180347..1804991622929034.256008-UTR-F-serratus_M_contig1134:180347..180499Fucus serratus maleUTRF-serratus_M_contig1134 180348..180499 +
1690962675.5180964-UTR-F-serratus_M_contig1134:180347..1804991690962675.5180964-UTR-F-serratus_M_contig1134:180347..180499Fucus serratus maleUTRF-serratus_M_contig1134 180348..180499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1134.1187.1prot_F-serratus_M_contig1134.1187.1Fucus serratus malepolypeptideF-serratus_M_contig1134 180033..180347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1134.1187.1

>prot_F-serratus_M_contig1134.1187.1 ID=prot_F-serratus_M_contig1134.1187.1|Name=mRNA_F-serratus_M_contig1134.1187.1|organism=Fucus serratus male|type=polypeptide|length=105bp
GGTREAFFPRTIFCSLSQALISESGFIINILRRVSLPGQIVQTTEVFCLR
SKIYGCGKLRRITVTFFRLTREGRGFENRSSPDIHWTLYALLENLISRAR
RVCI*
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mRNA from alignment at F-serratus_M_contig1134:180033..180499+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1134.1187.1 ID=mRNA_F-serratus_M_contig1134.1187.1|Name=mRNA_F-serratus_M_contig1134.1187.1|organism=Fucus serratus male|type=mRNA|length=467bp|location=Sequence derived from alignment at F-serratus_M_contig1134:180033..180499+ (Fucus serratus male)
GGTGGGACGCGAGAGGCTTTTTTTCCCCGAACGATTTTCTGTTCCTTATC
TCAAGCTCTAATTTCGGAAAGCGGTTTCATTATTAATATCTTGCGCCGCG
TTTCGTTGCCAGGACAAATCGTACAGACCACCGAGGTTTTCTGTTTGAGA
TCGAAAATTTACGGGTGTGGCAAACTCCGACGAATCACGGTCACCTTTTT
TCGACTCACACGAGAAGGAAGGGGTTTCGAAAACAGATCTTCACCCGACA
TCCATTGGACGTTGTACGCCCTCTTGGAGAATCTAATCTCTCGCGCCAGG
CGTGTGTGTATATAAGCACAACCACGTGTTTATACCTGCAGCAGAGTAGT
AGAAGGGACGGGTCGCTTTTGCCCGGTCACGGGTCAGAAAAGTGTACCAC
GCCAAGACTAGGGGCGTGCGTTGCCTCCCCCCCCCCTCCCCTCCCCCGCA
GCAGAGGGTTATACTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1134:180033..180499+

>mRNA_F-serratus_M_contig1134.1187.1 ID=mRNA_F-serratus_M_contig1134.1187.1|Name=mRNA_F-serratus_M_contig1134.1187.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig1134:180033..180499+ (Fucus serratus male)
GGTGGGACGCGAGAGGCTTTTTTTCCCCGAACGATTTTCTGTTCCTTATC
TCAAGCTCTAATTTCGGAAAGCGGTTTCATTATTAATATCTTGCGCCGCG
TTTCGTTGCCAGGACAAATCGTACAGACCACCGAGGTTTTCTGTTTGAGA
TCGAAAATTTACGGGTGTGGCAAACTCCGACGAATCACGGTCACCTTTTT
TCGACTCACACGAGAAGGAAGGGGTTTCGAAAACAGATCTTCACCCGACA
TCCATTGGACGTTGTACGCCCTCTTGGAGAATCTAATCTCTCGCGCCAGG
CGTGTGTGTATATAAGGTGGGACGCGAGAGGCTTTTTTTCCCCGAACGAT
TTTCTGTTCCTTATCTCAAGCTCTAATTTCGGAAAGCGGTTTCATTATTA
ATATCTTGCGCCGCGTTTCGTTGCCAGGACAAATCGTACAGACCACCGAG
GTTTTCTGTTTGAGATCGAAAATTTACGGGTGTGGCAAACTCCGACGAAT
CACGGTCACCTTTTTTCGACTCACACGAGAAGGAAGGGGTTTCGAAAACA
GATCTTCACCCGACATCCATTGGACGTTGTACGCCCTCTTGGAGAATCTA
ATCTCTCGCGCCAGGCGTGTGTGTATATAA
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