mRNA_F-serratus_M_contig1132.1170.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1132.1170.1
Unique NamemRNA_F-serratus_M_contig1132.1170.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1132.1170.1 vs. uniprot
Match: D7FZE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.250e-25
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:   28 KITDSAVAALVHPVRFISSIAPALLEHVVNLQHLVRTSGCGV-DGHDIREWDYLVGRVLEQSASNKGKYVALVVLLPRVGALRLMRLCPSLVEQVVWAVGIR 330
            ++ +  ++ALVHP + ISS+AP LLEHV  ++ LV     GV +G    E + LVG+VL Q A++KGKYVAL VLLPRVGA+R++ LCPSLVEQ+VWAVG+R
Sbjct:  559 QVLEVTMSALVHPAKLISSMAPVLLEHVFAIRQLVPGGDGGVGEGEGRSEPERLVGQVLNQPAASKGKYVALSVLLPRVGAIRMLELCPSLVEQLVWAVGVR 660
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BLAST of mRNA_F-serratus_M_contig1132.1170.1 vs. uniprot
Match: A0A6H5JLY3_9PHAE (DUF2428 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.630e-9
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  208 SASNKGKYVALVVLLPRVGALRLMRLCPSLVEQVVWAVGIR 330
            +A +KGKYVAL VLLPRVGALR++ LC SLVEQ+VWAVG R
Sbjct:    3 AAVSKGKYVALSVLLPRVGALRMLELCSSLVEQLVWAVGFR 43
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BLAST of mRNA_F-serratus_M_contig1132.1170.1 vs. uniprot
Match: A0A836CDT5_9STRA (DUF2428 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDT5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.820e-6
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  175 WDYLVGRVLEQSASNKGKYVALVVLLPRVGALRLMRLCPSLVEQVVWAVG 324
            W  +V ++L Q A  KGKY+AL  LLPRVGALRL+ L P LVE+++ AVG
Sbjct:  587 WQPVVEQMLSQPAEQKGKYMALSTLLPRVGALRLLPLQPDLVERLLDAVG 636
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1132.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZE0_ECTSI3.250e-2556.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLY3_9PHAE9.630e-975.61DUF2428 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CDT5_9STRA4.820e-658.00DUF2428 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1132contigF-serratus_M_contig1132:12266..13204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D7FZE0
KEGG koko:K01530
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of endoplasmic reticulum calcium ion concentration
EggNOG OGsCOG5543@1,KOG1810@2759
EC3.6.3.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size333
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1132.1170.1prot_F-serratus_M_contig1132.1170.1Fucus serratus malepolypeptideF-serratus_M_contig1132 12266..13202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.903371-CDS-F-serratus_M_contig1132:12265..123911622929027.903371-CDS-F-serratus_M_contig1132:12265..12391Fucus serratus maleCDSF-serratus_M_contig1132 12266..12391 +
1690962673.2196877-CDS-F-serratus_M_contig1132:12265..123911690962673.2196877-CDS-F-serratus_M_contig1132:12265..12391Fucus serratus maleCDSF-serratus_M_contig1132 12266..12391 +
1622929027.9230773-CDS-F-serratus_M_contig1132:12679..127641622929027.9230773-CDS-F-serratus_M_contig1132:12679..12764Fucus serratus maleCDSF-serratus_M_contig1132 12680..12764 +
1690962673.2313178-CDS-F-serratus_M_contig1132:12679..127641690962673.2313178-CDS-F-serratus_M_contig1132:12679..12764Fucus serratus maleCDSF-serratus_M_contig1132 12680..12764 +
1622929027.9539382-CDS-F-serratus_M_contig1132:13083..132021622929027.9539382-CDS-F-serratus_M_contig1132:13083..13202Fucus serratus maleCDSF-serratus_M_contig1132 13084..13202 +
1690962673.2412522-CDS-F-serratus_M_contig1132:13083..132021690962673.2412522-CDS-F-serratus_M_contig1132:13083..13202Fucus serratus maleCDSF-serratus_M_contig1132 13084..13202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1132.1170.1

>prot_F-serratus_M_contig1132.1170.1 ID=prot_F-serratus_M_contig1132.1170.1|Name=mRNA_F-serratus_M_contig1132.1170.1|organism=Fucus serratus male|type=polypeptide|length=110bp
QPELCQSLSKITDSAVAALVHPVRFISSIAPALLEHVVNLQHLVRTSGCG
VDGHDIREWDYLVGRVLEQSASNKGKYVALVVLLPRVGALRLMRLCPSLV
EQVVWAVGIR
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mRNA from alignment at F-serratus_M_contig1132:12266..13204+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1132.1170.1 ID=mRNA_F-serratus_M_contig1132.1170.1|Name=mRNA_F-serratus_M_contig1132.1170.1|organism=Fucus serratus male|type=mRNA|length=939bp|location=Sequence derived from alignment at F-serratus_M_contig1132:12266..13204+ (Fucus serratus male)
CAGCCGGAACTATGTCAATCGCTGTCAAAAATTACAGATTCAGCTGTGGC
TGCTCTTGTGCACCCGGTCAGGTTCATTTCGTCGATTGCGCCTGCGCTGC
TGGAGCATGTTGTCAACCTTCAACATGTGAGTAGCGCTGTCCGAGGTTCA
ATCGTCAGTAGGGCTGCTACGAGATGTCGCGGAGTAGCTCATCATGGTTG
GCATTCGGCAAACCAACGAACAGCCCTGTCCCCTACCTAACCTTTGAACG
CGTCCGGGGAATACTTCATGGGCATACTGAGACGCATGGTGGGTGATGCC
GGTGAACGACTCGTGAAAAAATGACTATCTTACACCAAGAATTGGTCCCC
CATGTCTAAAATCGGCACGCGGGATTGCGCCCCCCCCTAACCCTAACCCT
AACCCTGCGGGCAGCTGGTGCGCACGAGCGGGTGTGGAGTCGACGGACAT
GATATTCGAGAGTGGGACTACCTGGTGGGACGCGTTCTCGAGCAGTCAGG
TGTGTGTCTTCGGATGGTCACAAAGAAAGGTTGGAGCGTGAAGGTGGTGT
AATATTAATAGTTTGTGCTTCCCGTACCGTATTGATTGAGCACTTTCAAG
GCTGCACCCTCTTGCAAGCAACATTTGGATGCAAGGGCCACAGTAATTAT
CTTAGCGAACTCTACCGTCTACCGAGATAGCCACTCATGTCTGGAGCAGC
AAGACTCTGGTCAAGCACGAAAACAGAACCCGTTGAGCACGACTTACCTA
GCTTGAAACTCCGCTTCATATGTATACCCGTTTCCATGTACTTGCCTTGC
GATGCGACTGAAATGAAGCTTCCAACAAGGGCAAGTACGTGGCGTTGGTG
GTGCTTCTGCCACGTGTGGGAGCCCTCCGATTGATGAGGCTCTGCCCGTC
CCTGGTGGAGCAGGTGGTGTGGGCCGTAGGAATACGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1132:12266..13204+

>mRNA_F-serratus_M_contig1132.1170.1 ID=mRNA_F-serratus_M_contig1132.1170.1|Name=mRNA_F-serratus_M_contig1132.1170.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1132:12266..13204+ (Fucus serratus male)
CAGCCGGAACTATGTCAATCGCTGTCAAAAATTACAGATTCAGCTGTGGC
TGCTCTTGTGCACCCGGTCAGGTTCATTTCGTCGATTGCGCCTGCGCTGC
TGGAGCATGTTGTCAACCTTCAACATCAGCCGGAACTATGTCAATCGCTG
TCAAAAATTACAGATTCAGCTGTGGCTGCTCTTGTGCACCCGGTCAGGTT
CATTTCGTCGATTGCGCCTGCGCTGCTGGAGCATGTTGTCAACCTTCAAC
ATCTGGTGCGCACGAGCGGGTGTGGAGTCGACGGACATGATATTCGAGAG
TGGGACTACCTGGTGGGACGCGTTCTCGAGCAGTCAGCTGGTGCGCACGA
GCGGGTGTGGAGTCGACGGACATGATATTCGAGAGTGGGACTACCTGGTG
GGACGCGTTCTCGAGCAGTCAGCTTCCAACAAGGGCAAGTACGTGGCGTT
GGTGGTGCTTCTGCCACGTGTGGGAGCCCTCCGATTGATGAGGCTCTGCC
CGTCCCTGGTGGAGCAGGTGGTGTGGGCCGTAGGAATACGACTTCCAACA
AGGGCAAGTACGTGGCGTTGGTGGTGCTTCTGCCACGTGTGGGAGCCCTC
CGATTGATGAGGCTCTGCCCGTCCCTGGTGGAGCAGGTGGTGTGGGCCGT
AGGAATACGA
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