mRNA_F-serratus_M_contig113.1168.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig113.1168.1
Unique NamemRNA_F-serratus_M_contig113.1168.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig113.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig113contigF-serratus_M_contig113:735306..735649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.7847805-UTR-F-serratus_M_contig113:735305..7353311622929027.7847805-UTR-F-serratus_M_contig113:735305..735331Fucus serratus maleUTRF-serratus_M_contig113 735306..735331 +
1690962673.1814487-UTR-F-serratus_M_contig113:735305..7353311690962673.1814487-UTR-F-serratus_M_contig113:735305..735331Fucus serratus maleUTRF-serratus_M_contig113 735306..735331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.800558-CDS-F-serratus_M_contig113:735331..7356491622929027.800558-CDS-F-serratus_M_contig113:735331..735649Fucus serratus maleCDSF-serratus_M_contig113 735332..735649 +
1690962673.1896236-CDS-F-serratus_M_contig113:735331..7356491690962673.1896236-CDS-F-serratus_M_contig113:735331..735649Fucus serratus maleCDSF-serratus_M_contig113 735332..735649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig113.1168.1prot_F-serratus_M_contig113.1168.1Fucus serratus malepolypeptideF-serratus_M_contig113 735332..735649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig113.1168.1

>prot_F-serratus_M_contig113.1168.1 ID=prot_F-serratus_M_contig113.1168.1|Name=mRNA_F-serratus_M_contig113.1168.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MESGVFVLEVRVSHFTEYTLKRNVEAAVGQAEVTEIKRFPYYASMRNVFL
FVNQGNKPIMVYYWHCPSKRSFVSRVKGSLNVGPGAISGEVDRKRQDPPV
EQVFSK
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mRNA from alignment at F-serratus_M_contig113:735306..735649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig113.1168.1 ID=mRNA_F-serratus_M_contig113.1168.1|Name=mRNA_F-serratus_M_contig113.1168.1|organism=Fucus serratus male|type=mRNA|length=344bp|location=Sequence derived from alignment at F-serratus_M_contig113:735306..735649+ (Fucus serratus male)
TTCCAATCGAAGGAGATATCGGGCTGATGGAAAGTGGTGTATTTGTTCTG
GAAGTGAGAGTGTCTCACTTTACTGAATACACCCTTAAGCGAAACGTGGA
GGCAGCAGTGGGTCAGGCGGAAGTCACAGAAATCAAGAGGTTTCCATACT
ACGCGAGCATGCGAAACGTTTTCTTGTTTGTGAACCAAGGCAACAAACCA
ATCATGGTATATTATTGGCATTGTCCGTCCAAACGGAGTTTCGTATCGAG
GGTAAAGGGTTCGCTAAATGTAGGTCCCGGCGCTATAAGTGGAGAGGTTG
ATCGGAAGAGACAGGATCCCCCAGTCGAGCAAGTTTTCTCCAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig113:735306..735649+

>mRNA_F-serratus_M_contig113.1168.1 ID=mRNA_F-serratus_M_contig113.1168.1|Name=mRNA_F-serratus_M_contig113.1168.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig113:735306..735649+ (Fucus serratus male)
ATGGAAAGTGGTGTATTTGTTCTGGAAGTGAGAGTGTCTCACTTTACTGA
ATACACCCTTAAGCGAAACGTGGAGGCAGCAGTGGGTCAGGCGGAAGTCA
CAGAAATCAAGAGGTTTCCATACTACGCGAGCATGCGAAACGTTTTCTTG
TTTGTGAACCAAGGCAACAAACCAATCATGGTATATTATTGGCATTGTCC
GTCCAAACGGAGTTTCGTATCGAGGGTAAAGGGTTCGCTAAATGTAGGTC
CCGGCGCTATAAGTGGAGAGGTTGATCGGAAGAGACAGGATCCCCCAGTC
GAGCAAGTTTTCTCCAAAATGGAAAGTGGTGTATTTGTTCTGGAAGTGAG
AGTGTCTCACTTTACTGAATACACCCTTAAGCGAAACGTGGAGGCAGCAG
TGGGTCAGGCGGAAGTCACAGAAATCAAGAGGTTTCCATACTACGCGAGC
ATGCGAAACGTTTTCTTGTTTGTGAACCAAGGCAACAAACCAATCATGGT
ATATTATTGGCATTGTCCGTCCAAACGGAGTTTCGTATCGAGGGTAAAGG
GTTCGCTAAATGTAGGTCCCGGCGCTATAAGTGGAGAGGTTGATCGGAAG
AGACAGGATCCCCCAGTCGAGCAAGTTTTCTCCAAA
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