mRNA_F-serratus_M_contig113.1166.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig113.1166.1
Unique NamemRNA_F-serratus_M_contig113.1166.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig113.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig113contigF-serratus_M_contig113:659261..659999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.193622-UTR-F-serratus_M_contig113:659260..6595431622929026.193622-UTR-F-serratus_M_contig113:659260..659543Fucus serratus maleUTRF-serratus_M_contig113 659261..659543 +
1690962672.2383282-UTR-F-serratus_M_contig113:659260..6595431690962672.2383282-UTR-F-serratus_M_contig113:659260..659543Fucus serratus maleUTRF-serratus_M_contig113 659261..659543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.2102926-CDS-F-serratus_M_contig113:659543..6599991622929026.2102926-CDS-F-serratus_M_contig113:659543..659999Fucus serratus maleCDSF-serratus_M_contig113 659544..659999 +
1690962672.2484074-CDS-F-serratus_M_contig113:659543..6599991690962672.2484074-CDS-F-serratus_M_contig113:659543..659999Fucus serratus maleCDSF-serratus_M_contig113 659544..659999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig113.1166.1prot_F-serratus_M_contig113.1166.1Fucus serratus malepolypeptideF-serratus_M_contig113 659544..659999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig113.1166.1

>prot_F-serratus_M_contig113.1166.1 ID=prot_F-serratus_M_contig113.1166.1|Name=mRNA_F-serratus_M_contig113.1166.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MASFDDLKRMGYTSKEITDIFRSVLDVLKDHYNKDTMVGIMFETDENRVR
RDKSNEIAEVVTAHHLDKMKTFLADHKLTTWRRENGFDLQPVVIGKPPPT
RAEDNACLRFQVQELRNALSAYASNPVPPQDACIILEDGEQEVRVDLGLE
QE
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mRNA from alignment at F-serratus_M_contig113:659261..659999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig113.1166.1 ID=mRNA_F-serratus_M_contig113.1166.1|Name=mRNA_F-serratus_M_contig113.1166.1|organism=Fucus serratus male|type=mRNA|length=739bp|location=Sequence derived from alignment at F-serratus_M_contig113:659261..659999+ (Fucus serratus male)
ACTCGATCACGATTAACGTTCGGAACAACGATTAACGATTATTCGACCTT
CGACTGGACGTCTGTGAGAAAGTGTCGATTTTTACATTGGGCTGCAGAAG
ATTGATACTTCCGCCGAGGAGAACGAGTACCGCCGAGGAAGCGAAGCGTC
ACCGCTGGAGGGACAGCGAAGTTGACGATACCGGGAACCGGAGAACGGAC
CGAAAGGAGAACGAGACCAGGAGTGGATGCGACGCCGATAAGGGCGTGGG
ACTCCTCCTGTGTGCGCCAATAATAAGTAAGCGATGGCTTCTTTCGATGA
TTTGAAGAGGATGGGATACACGAGCAAGGAAATAACTGATATTTTTCGCT
CTGTCTTAGATGTACTGAAAGACCACTACAATAAAGACACAATGGTTGGT
ATCATGTTTGAGACCGACGAGAACCGGGTGCGCCGAGATAAATCAAACGA
GATCGCAGAAGTTGTTACTGCTCACCACCTGGATAAGATGAAGACTTTCC
TCGCGGACCACAAGCTAACGACCTGGCGCAGGGAAAACGGTTTTGATCTC
CAGCCAGTAGTGATCGGTAAACCCCCTCCTACGCGCGCAGAGGACAATGC
ATGTCTGCGGTTCCAAGTACAGGAATTGCGAAATGCACTTTCGGCATATG
CATCAAATCCCGTTCCACCGCAAGATGCATGTATTATTTTGGAGGATGGA
GAACAAGAGGTTAGAGTGGACCTGGGGCTAGAACAAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig113:659261..659999+

>mRNA_F-serratus_M_contig113.1166.1 ID=mRNA_F-serratus_M_contig113.1166.1|Name=mRNA_F-serratus_M_contig113.1166.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig113:659261..659999+ (Fucus serratus male)
ATGGCTTCTTTCGATGATTTGAAGAGGATGGGATACACGAGCAAGGAAAT
AACTGATATTTTTCGCTCTGTCTTAGATGTACTGAAAGACCACTACAATA
AAGACACAATGGTTGGTATCATGTTTGAGACCGACGAGAACCGGGTGCGC
CGAGATAAATCAAACGAGATCGCAGAAGTTGTTACTGCTCACCACCTGGA
TAAGATGAAGACTTTCCTCGCGGACCACAAGCTAACGACCTGGCGCAGGG
AAAACGGTTTTGATCTCCAGCCAGTAGTGATCGGTAAACCCCCTCCTACG
CGCGCAGAGGACAATGCATGTCTGCGGTTCCAAGTACAGGAATTGCGAAA
TGCACTTTCGGCATATGCATCAAATCCCGTTCCACCGCAAGATGCATGTA
TTATTTTGGAGGATGGAGAACAAGAGGTTAGAGTGGACCTGGGGCTAGAA
CAAGAGATGGCTTCTTTCGATGATTTGAAGAGGATGGGATACACGAGCAA
GGAAATAACTGATATTTTTCGCTCTGTCTTAGATGTACTGAAAGACCACT
ACAATAAAGACACAATGGTTGGTATCATGTTTGAGACCGACGAGAACCGG
GTGCGCCGAGATAAATCAAACGAGATCGCAGAAGTTGTTACTGCTCACCA
CCTGGATAAGATGAAGACTTTCCTCGCGGACCACAAGCTAACGACCTGGC
GCAGGGAAAACGGTTTTGATCTCCAGCCAGTAGTGATCGGTAAACCCCCT
CCTACGCGCGCAGAGGACAATGCATGTCTGCGGTTCCAAGTACAGGAATT
GCGAAATGCACTTTCGGCATATGCATCAAATCCCGTTCCACCGCAAGATG
CATGTATTATTTTGGAGGATGGAGAACAAGAGGTTAGAGTGGACCTGGGG
CTAGAACAAGAG
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