mRNA_F-serratus_M_contig113.1162.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig113.1162.1
Unique NamemRNA_F-serratus_M_contig113.1162.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig113.1162.1 vs. uniprot
Match: A0A6H5JC12_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC12_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.170e-26
Identity = 69/147 (46.94%), Postives = 82/147 (55.78%), Query Frame = 1 
Query:    1 AGRDAVWLALRGWQVTAMDCWEQARRKALQLAERMRVSARVDAVRGKVKTNGDIHVWMEPRASRLPFVDGVCGAGGERSPSRLSGLPASDGCECKLSCDCGPRADCILEEQIIRPSTPLEEFDAYGLVVVVRFLERAAFETLARLVD 441
            AGRDAVWLA RGW+VTAMDCW QA +KA QLA R  VS RV+ +RGKVK  G+IHV +    +R    D                    D             ++    E IIRPSTP  E+  Y LVV +RFLER+AF+TL RLVD
Sbjct:  218 AGRDAVWLAKRGWRVTAMDCWNQALQKAAQLARRNGVSERVEVLRGKVKHTGEIHVSVRAEEAR----DTAXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXSEG--GELIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVD 358
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BLAST of mRNA_F-serratus_M_contig113.1162.1 vs. uniprot
Match: D8LJ32_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ32_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.240e-26
Identity = 68/147 (46.26%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:    1 AGRDAVWLALRGWQVTAMDCWEQARRKALQLAERMRVSARVDAVRGKVKTNGDIHVWMEPRASRLPFVDGVCGAGGERSPSRLSGLPASDGCECKLSCDCGPRADCILEEQIIRPSTPLEEFDAYGLVVVVRFLERAAFETLARLVD 441
            AGRDAVWLA RGW+VTAMDCW QA +KA QLA R  VS  V+ +RGKVK  G+IHV +     R                                    GP       E IIRPSTP  E+  Y LVV +RFLER+AF+TL RLVD
Sbjct:  139 AGRDAVWLAKRGWRVTAMDCWNQALQKAAQLARRNGVSESVEVLRGKVKHTGEIHVSV-----RAEEAHDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPEGG----EMIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVD 276
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig113.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC12_9PHAE2.170e-2646.94Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
D8LJ32_ECTSI3.240e-2646.26Methyltransf_25 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig113contigF-serratus_M_contig113:378827..380390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size444
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig113.1162.1prot_F-serratus_M_contig113.1162.1Fucus serratus malepolypeptideF-serratus_M_contig113 378829..380390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.2671747-CDS-F-serratus_M_contig113:378828..3789441622929027.2671747-CDS-F-serratus_M_contig113:378828..378944Fucus serratus maleCDSF-serratus_M_contig113 378829..378944 -
1690962672.8352263-CDS-F-serratus_M_contig113:378828..3789441690962672.8352263-CDS-F-serratus_M_contig113:378828..378944Fucus serratus maleCDSF-serratus_M_contig113 378829..378944 -
1622929027.2824442-CDS-F-serratus_M_contig113:379281..3794871622929027.2824442-CDS-F-serratus_M_contig113:379281..379487Fucus serratus maleCDSF-serratus_M_contig113 379282..379487 -
1690962672.85105-CDS-F-serratus_M_contig113:379281..3794871690962672.85105-CDS-F-serratus_M_contig113:379281..379487Fucus serratus maleCDSF-serratus_M_contig113 379282..379487 -
1622929027.2943885-CDS-F-serratus_M_contig113:380037..3801141622929027.2943885-CDS-F-serratus_M_contig113:380037..380114Fucus serratus maleCDSF-serratus_M_contig113 380038..380114 -
1690962672.866855-CDS-F-serratus_M_contig113:380037..3801141690962672.866855-CDS-F-serratus_M_contig113:380037..380114Fucus serratus maleCDSF-serratus_M_contig113 380038..380114 -
1622929027.307787-CDS-F-serratus_M_contig113:380348..3803901622929027.307787-CDS-F-serratus_M_contig113:380348..380390Fucus serratus maleCDSF-serratus_M_contig113 380349..380390 -
1690962672.8790684-CDS-F-serratus_M_contig113:380348..3803901690962672.8790684-CDS-F-serratus_M_contig113:380348..380390Fucus serratus maleCDSF-serratus_M_contig113 380349..380390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig113.1162.1

>prot_F-serratus_M_contig113.1162.1 ID=prot_F-serratus_M_contig113.1162.1|Name=mRNA_F-serratus_M_contig113.1162.1|organism=Fucus serratus male|type=polypeptide|length=147bp
AGRDAVWLALRGWQVTAMDCWEQARRKALQLAERMRVSARVDAVRGKVKT
NGDIHVWMEPRASRLPFVDGVCGAGGERSPSRLSGLPASDGCECKLSCDC
GPRADCILEEQIIRPSTPLEEFDAYGLVVVVRFLERAAFETLARLVD
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mRNA from alignment at F-serratus_M_contig113:378827..380390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig113.1162.1 ID=mRNA_F-serratus_M_contig113.1162.1|Name=mRNA_F-serratus_M_contig113.1162.1|organism=Fucus serratus male|type=mRNA|length=1564bp|location=Sequence derived from alignment at F-serratus_M_contig113:378827..380390- (Fucus serratus male)
GCCGGCAGAGATGCGGTGTGGTTGGCGCTTCGAGGCTGGCAGGTGCGTGC
GAAGGACCGTCTCCGCGTCGTCGAGAGATGGATCGTTAGAGATGGCTCGT
GTGGTTACAGAGCAGCCTTGATTGTCGATATGGCATGCAATCTAGAGTGG
CGCCCCCCACCTTCTGTGTGAAGCCATCCCGCCTCGATGCCCCAATATTG
TATTATCCTTTTTTTTTCATCAACCTTCCACGCTCCCGTCCCGCTTTTTT
GGGCGCATTCGGCCGTTACACTCTAGGTGACCGCGATGGACTGCTGGGAA
CAAGCGCGTAGGAAGGCGTTGCAGCTCGCAGAACGAATGCGTGTCAGCGC
AAGGCGAGTATATATTTCAACTCCCCTTCCCCTTGCCCCCCGCCCCCGAA
CGAAACAAAACAAAACTTGACACTTACTGTACACGGTGTCTCTGGTCCGT
CCTCGAGCGCATTCGTAGATATTCTTGAGAGGCTTTGTAGTAGATCTCTC
ACCTTTTTTGTGAAATTGTTCGAACAAGAAAAAGAGAGCCTCTTAGCCCG
GCAGTATCAACCCGCGTCGAGAGACCGAGGCGTGACGTTGCAATGTTGTG
AGATTCGTCGGTGAGGCGAGGCTTCGGCAGCGGTAAGATAGAAGACAGAA
CGCGAGGACGGGGCAAAGCGAGGAATGTTACCTACAGCGCCCTCTCCTCC
GCCCTCCTCGGCACATAATCTCGGATCCCATCTACTTCGTCTGCTACTTC
AAATAAGGAACCACTGCGTATGGCGTATGACCTATGACCTCGTAGCGGGT
ACAATTACACTTTGCGCGAAAGTCGCCAAGACGTGCCGAAGACGTCCCTA
ACCTAATGCAGTATCCCCTCGGGCTCTAACCCCTGTCGCATTTTCCCAAA
AAGAGTCGATGCCGTACGTGGGAAGGTCAAGACTAACGGCGACATTCATG
TCTGGATGGAGCCCCGGGCCAGTCGCTTGCCCTTCGTGGATGGGGTTTGT
GGAGCCGGGGGAGAGAGGAGTCCTTCGAGGTTGAGCGGTCTTCCTGCCTC
TGACGGTTGCGAATGCAAGTTATCTTGCGATTGTGGGCCACGCGCCGATT
GCATTCTAGGTGAGGTGGGTGCGACTTCGCTGGGAAATACCATGTACCAC
GGGTTCAGTGCGTTTCACGTGAACAGCTACAGTACAAGGTTGCCCGTCAG
CGTGTGTTCGGTCCGATCTCTCCTGCGCACAGCAATAATGCACTTCCTCA
CTTGCCACGGCCAAGGGTCACTATAGAAGTCGTCATTTTCATGCGCCCAC
AGACAGCGCTGAGGCACTGTCGGAATCTGGGTGAGGCTTGAACGCCGCGC
CACCGCTTGACGTTTTCGCTCGGCCACCGAACGCTTTTTCCGCCTTCTCT
GTCTCTCTCTCTCTCTCTTTTCTTTTCTTTTTTACCAATTCATCAGAAGA
GCAAATCATCAGACCCTCGACGCCCCTAGAGGAATTCGACGCGTATGGCC
TCGTTGTCGTCGTCAGATTCCTGGAACGCGCGGCGTTCGAGACACTCGCC
CGACTCGTCGACCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig113:378827..380390-

>mRNA_F-serratus_M_contig113.1162.1 ID=mRNA_F-serratus_M_contig113.1162.1|Name=mRNA_F-serratus_M_contig113.1162.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig113:378827..380390- (Fucus serratus male)
GCCGGCAGAGATGCGGTGTGGTTGGCGCTTCGAGGCTGGCAGGCCGGCAG
AGATGCGGTGTGGTTGGCGCTTCGAGGCTGGCAGGTGACCGCGATGGACT
GCTGGGAACAAGCGCGTAGGAAGGCGTTGCAGCTCGCAGAACGAATGCGT
GTCAGCGCAAGGTGACCGCGATGGACTGCTGGGAACAAGCGCGTAGGAAG
GCGTTGCAGCTCGCAGAACGAATGCGTGTCAGCGCAAGAGTCGATGCCGT
ACGTGGGAAGGTCAAGACTAACGGCGACATTCATGTCTGGATGGAGCCCC
GGGCCAGTCGCTTGCCCTTCGTGGATGGGGTTTGTGGAGCCGGGGGAGAG
AGGAGTCCTTCGAGGTTGAGCGGTCTTCCTGCCTCTGACGGTTGCGAATG
CAAGTTATCTTGCGATTGTGGGCCACGCGCCGATTGCATTCTAGAGTCGA
TGCCGTACGTGGGAAGGTCAAGACTAACGGCGACATTCATGTCTGGATGG
AGCCCCGGGCCAGTCGCTTGCCCTTCGTGGATGGGGTTTGTGGAGCCGGG
GGAGAGAGGAGTCCTTCGAGGTTGAGCGGTCTTCCTGCCTCTGACGGTTG
CGAATGCAAGTTATCTTGCGATTGTGGGCCACGCGCCGATTGCATTCTAG
AAGAGCAAATCATCAGACCCTCGACGCCCCTAGAGGAATTCGACGCGTAT
GGCCTCGTTGTCGTCGTCAGATTCCTGGAACGCGCGGCGTTCGAGACACT
CGCCCGACTCGTCGACAAGAGCAAATCATCAGACCCTCGACGCCCCTAGA
GGAATTCGACGCGTATGGCCTCGTTGTCGTCGTCAGATTCCTGGAACGCG
CGGCGTTCGAGACACTCGCCCGACTCGTCGAC
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