mRNA_F-serratus_M_contig1126.1141.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1126.1141.1
Unique NamemRNA_F-serratus_M_contig1126.1141.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1126.1141.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.250e-51
Identity = 104/188 (55.32%), Postives = 119/188 (63.30%), Query Frame = 1 
Query:   10 ARCCSLDCAARFCST---VGDDSTQL---------------------------HNPAFLRREQAMFAALAWEKDRKAFVIARVPPAKLSNGSMMAANTPVCNLAFRKLFGVSETLISACKQTPRARASSSTERTTICATRDHPKLERVVAFLRHHQDLYGQKMPNSDESYLSFKDKNELYDEYLKVQR 483
            ARCC LDCA RFC      GDD                               HN  +LR EQ  FA L  E DRKAFVIA+VPP KL+ GSM+AANT VCN AF + FGVSETLIS+CK+TP+A+ASSS  R +I +TRD PKLE VVAFL  H+D+YGQKMPNSD+SYL  K K ELY+EY K  R
Sbjct:  107 ARCCGLDCALRFCKPDDEAGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQHNWEYLRAEQDRFAKLTREPDRKAFVIAQVPPKKLAKGSMIAANTVVCNTAFTRFFGVSETLISSCKKTPKAQASSSVHRASIASTRDRPKLEGVVAFLHRHEDMYGQKMPNSDQSYLYLKSKLELYEEYSKNTR 294
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1126.1141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE1.250e-5155.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1126contigF-serratus_M_contig1126:120887..127073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size484
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1126.1141.1prot_F-serratus_M_contig1126.1141.1Fucus serratus malepolypeptideF-serratus_M_contig1126 120887..127073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.0435584-CDS-F-serratus_M_contig1126:120886..1212031622929022.0435584-CDS-F-serratus_M_contig1126:120886..121203Fucus serratus maleCDSF-serratus_M_contig1126 120887..121203 +
1690962670.1558146-CDS-F-serratus_M_contig1126:120886..1212031690962670.1558146-CDS-F-serratus_M_contig1126:120886..121203Fucus serratus maleCDSF-serratus_M_contig1126 120887..121203 +
1622929022.0568812-CDS-F-serratus_M_contig1126:126650..1267831622929022.0568812-CDS-F-serratus_M_contig1126:126650..126783Fucus serratus maleCDSF-serratus_M_contig1126 126651..126783 +
1690962670.168801-CDS-F-serratus_M_contig1126:126650..1267831690962670.168801-CDS-F-serratus_M_contig1126:126650..126783Fucus serratus maleCDSF-serratus_M_contig1126 126651..126783 +
1622929022.0679762-CDS-F-serratus_M_contig1126:127040..1270731622929022.0679762-CDS-F-serratus_M_contig1126:127040..127073Fucus serratus maleCDSF-serratus_M_contig1126 127041..127073 +
1690962670.1788912-CDS-F-serratus_M_contig1126:127040..1270731690962670.1788912-CDS-F-serratus_M_contig1126:127040..127073Fucus serratus maleCDSF-serratus_M_contig1126 127041..127073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1126.1141.1

>prot_F-serratus_M_contig1126.1141.1 ID=prot_F-serratus_M_contig1126.1141.1|Name=mRNA_F-serratus_M_contig1126.1141.1|organism=Fucus serratus male|type=polypeptide|length=161bp
MTPARCCSLDCAARFCSTVGDDSTQLHNPAFLRREQAMFAALAWEKDRKA
FVIARVPPAKLSNGSMMAANTPVCNLAFRKLFGVSETLISACKQTPRARA
SSSTERTTICATRDHPKLERVVAFLRHHQDLYGQKMPNSDESYLSFKDKN
ELYDEYLKVQR
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mRNA from alignment at F-serratus_M_contig1126:120887..127073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1126.1141.1 ID=mRNA_F-serratus_M_contig1126.1141.1|Name=mRNA_F-serratus_M_contig1126.1141.1|organism=Fucus serratus male|type=mRNA|length=6187bp|location=Sequence derived from alignment at F-serratus_M_contig1126:120887..127073+ (Fucus serratus male)
ATGACACCCGCGCGGTGCTGCTCCCTCGATTGCGCGGCGAGGTTTTGCTC
GACCGTTGGCGATGATAGTACTCAGCTCCACAACCCAGCCTTCCTGCGAC
GAGAGCAAGCAATGTTTGCCGCATTAGCGTGGGAAAAAGATCGTAAAGCA
TTCGTGATCGCGAGAGTCCCTCCGGCAAAGCTATCCAACGGTAGCATGAT
GGCCGCTAATACTCCCGTCTGCAACTTAGCGTTTCGGAAGCTTTTCGGCG
TGTCTGAGACCCTCATCAGCGCATGCAAGCAGACGCCTCGGGCGCGTGCA
TCGAGCTCCACAGAAAGGTACGAAGTAAATGAGGACCGCCTTACACATAA
TAAGTACATTAGACTTTTCCCTGACATTATATTGTTGACCCAAGGTTACT
GGCTCTTTGACCCAATGTTATGTTGCACAATAATATGCTTGATGGGGTAC
TATAATGTTGAACCAATATTATTGCCAGCGAAAAAATTGGGTAAAAATGG
AGATCTCGTGTACTTCTCCCTGATATTATATTGATTGTTGACCCCACCTC
TGTCTCTACCTTTCCTGTTTCTTCTCCCTGACACCAAACTGTTGACCCAA
AGGTTGTCTCCTGGATAGTATACTGTTGACCCATTGCTACTACCATCGGA
GAACCCGCGCTAAAACTCCATCGAAAGGGTTCGTAGATGTAGCTTTCGTA
CTTGTAGCCGTTTACCCTAACTATAATGTAGTGTGTATGTATATATTGTT
GACTCGAAGTTATCCCAACTGGGTACTCGGTTAATTACCATGAAGTTATG
TAATTGTAGCCTTTGAATCCCCTTCAATGACACCCATCTGATCCTAGATG
TAAGCTCCCCATGTATTCTGGGTTCGTGTGATTACATATGTTCGCTCTAT
AGGGCAACAATTGAGAACCTAGGGCTGCAAAACAGAACCACAAAAGCACG
ATTTGTCACTATGGAAACCCCCGAACATTTTTTTTTTTGAATTGCAAATT
GCAAACCAACTGCTCAGAATCAAGCGCCAGCCATGAATTGGGACCTCGCA
GTCAGCTGGGGTAGGGGTGTCTGGGTTAGGGTTAGCGTTAGCGATAGCGT
TAGGTTTTTTTATTTTTCGCTGGAAAACCAACTGCTACTGTACTGCTGTA
ACCAGTATTATCATTTTTGAATCGCAAACCAACTGCTCAGATTCGCAAAC
CAACTGCTCAAAATTAAGCGCCAGCCATGAATTGGGACCTCGCAGTCAGC
TGGGGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTCACATTCAGCGTATTG
GTTGCCAACCCGAAAAAACTACTTTACACGGTGGCCAATCCCGCTCGTGG
TCTGCTGAACAGGGAAAAGAGAACAAAAGAAAAGTCTGGCAGCATACCCC
CCCACCCCCACACTGCTCGTTTGGAGAAAAAAACACGCTACGCATCTACA
GGCGCTACGCAGGTCTCGGTCGGTCTCGCGTCCGTACGAGGATATCTTCG
GCTCGTCGACTAGGCCAGTGGATGTGGCTCCGCAAAATTCTACACTCTTG
TCTGCGATAACAGGTTTCCCAGTCTCGTTGCTTCTCTCTTCTCCTGGCGA
TGTCTAGCCGCGTCTACCTCTTCTTTCCTCCACGCAGCCATGAACCTCCG
CCCACCCTCCGAGACCGTCTCAACCCAAACCTCAGCCTTTAACGCCGTCG
CTTTCCAATCCCCGGATATGCCAAACGCCCGGATGTCGCTCTGGACGCAA
TCGGTCCACTCTTTCTCCTTCCCACCCCGTCCTCTCCGTAGTGCACCCTC
AAGGTTTCCAAAAACGATTCGCTTTGGCAGCCGCCCGCTGCTCATTCTGA
GGAGCGTCCCCGCCCACAGCAGTCTTCTCGTTCGCAATGTCGTCTCAATG
CTCTCACACTGGGTTATCTCAAGGGGACGGTAGTATGAAGTCATCCGGTG
GTCCGGTCTCTTGCGCTGTGCCCCGATGATACGGAGCAAGACTCGGTGGT
GTACTGTGCGGAGTTTGGCGTAGTGTTCCTGGCGGAGGGTCCACGTACTG
CATCCATACAAAAGGGCCTCGATTGCCTCTGCCTTAACCATTCGGATCTT
GAGGGAGAGCGCGACTTTCCGTTGGTCGTAGAGCTCCCGTTGGTACCGCC
TGATGCGCACCCAGCATGCGCGGGTCCGTCTGGCGATTTCAGTGGACATG
TCTGGGACTTCGGTCACGGCGCCCCCTAGGTAGGTGAAGGATCGTACCTG
TTTGTACGTTTGCCCGGCCGCTTCGACTTGCACCATCGTCCGCGGTGTAC
GCGGTGGAGGCATGCACATGGTCTCTGTCTTCTTCGCCGACACGGTTAAC
GCGAAGGCCCGGCAAACCTCTACGATGACCTCCATCATCTTAGCGAGCCC
CTGCGGCGATCGCGAGACTATGCAGGCGTCATCCGCGTACAGCATGCCCC
ACACCGCACGACGAATGTAGTCCATAGCCAGCTCCGGTCCCATCGACGTC
GGCGGTTCCTTCAGGTGCACCAGATCGGCGAGGATGGCCGGTTCCTCACT
GAATCTCTGGAGAACAACGGTCAGCACGGCTGCAAAAAAGATGTTGAACA
ACAGCGGGGATAGCACGCATCCTTGCCGTAGTCCTTGCTCCACCTCGAAC
CAATCCGAACAGACGCCGTCATCAGGTCGCACACAGGCTCTCATCCCATC
GTGGAATTGTTGGATGACTGCTATCATCTGCGGTGGTACTCCGATGCGAG
TGAGTACCTGCCACAGGAGAGTGCGGTCAACGGTGTCGTATGCCTTCTGG
AGATCTATGAAGCACATGAAGAGAGACACCCAGCCTTCCGCCCAATTTCC
TGCAGCCTGCGCACCACAAACATAGGGGGGTCTGGGTTAGCGTTAGCGAT
AGCGTTACGGTTTTTTATTTTTCGCAGACGTCGTATATTCACCTGTATTG
TACAGCTGTAACCAGTAATGTTATTTTTGAATCGCAAACCAACTGCTCAG
AACCAAGCGCCAGCCATGAATTGGGACCTCGCAGTCAGCTGGGCTAGGGG
GGTCTGGGTTAGCGTTAGCGTTATTATTTATTATTTTTTAGCGATAGCAT
TAGGGTTTTTAATTTTTTGCAGACGTCGTATATTTACCTATACTGTACTT
TTTTTTTTAAAGAAAAAACAGAACGCGCCTATACCTTCTGAGCATATCCT
CCAGTCAGAAGGAAAAATGTCAAAACGCCAGGTGGGATCAAAGGCTGCAA
ATACAAAACCTCTTCATGGCATTTAAACGGGTTCCCCTATGGTAATAACA
TTGGGTCAACAGTATAATGTCGGAGAGAAGCCCACCGTTAAACTGTACAC
TTACATCAATCGCCATGCAGGGACACCAGAAAAACATAACTCATGAAAAC
ATGGTAGCGATAATACACTTGCTACCTGGGCTATAAGGACGAAGACACTA
CATCTAATTATGTTCCCATATTGTCAAGAGAAAATTATTTTGTCCTGTTA
ATTTTCCGCCTACATCACAACAACATGCATTGGCGGCAAGTCTATTTACT
TACTATATATTTTTCTAAACAGCGTTTAGGTGGGGTCATAGGCTACAACG
AAAACCTACTCATGGTATTTAAACCGTTTCACCAGGGGGAGTAACATTGG
GTCAACAGTATAATGCTGCTGTAACCAGCATTATTCATTTTTGAATCGCA
AGGACCGGTCGCCCCGGTAGCTCAGAGGTACCTCGTAACCCTCTGACTCG
TTGGGACGTGGGTTTGATCCCGGCAAACGGGATCTAAAATAAAAATGCCC
AACGGGTGGAGAACGATTAATTCGTTAGTACACAAAGTTCGACTTCACGG
TCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGATAAAAATTATGGC
ACGCACCGCAGAAGGAAGGTGGATGAGAAATCATGTGTGACCTTCCTCCT
GTGTGACCCCGGCTGGTACGTCCATTGATGTCCAGAATAGATGGGAAGAA
AACACACTAACACACAAACCAACTGCCCAGAACCATGCGCCAATCATCGC
GCTGCTTTTTTGGTTCTGTTTTGCAGCTCGGTTCTCAATTGTTGCCCTAT
AGGGCGAATATACGCCGACCGATTTAACCAAGCCCCTACTCCTATGTATG
CATGTATGGTCATCACATATAGCAGAGTATGGATCAACCTGGTAAGGTTG
CCATTCCTGATCATGGTCAGCTGAACAGGGAAAATAATATTCCCCTGTCC
CCGTACGTGCCTGAGAATTTGGTCTCGCGAGACCGGTTCAGCCGTCCCGT
CCCGCGCCAGCCTGCTAATCTCCATACTCAGGCTGAATATGACTCAGTGG
TACTATTATCGGCACTCGTAATATCCTTGTAACTATATATTACTGTGGTT
ATGTTGAAGTATGATTGGTGGCTGGACATGTTTTGCTTTGTTTTGCTCTG
TTTTGCTTCGTTTTTGTCTCTATGCTTTCGTTGAAGCCGCAGCCCTTCGT
TCAATCGTCCTTCGAATGCAGGCGCCCCGGTAGCCCCACGTGTTTCTATT
TTTTGGAGATGTCGCTTTTTTCGAGTATTTCTTGTACCATTTCCGCTTTC
TCTTTGTATGGAGAGTACGTCGTACGTTCTTTCCTTCCGAATGGTGTTTT
CTACCTTGTGACCACGGGCTGGGTTTTTTGACATCAGCTTATGTGAGAAT
TCAATCAATCAATGGTTATTAATATAAGTGTAACAGTAGTCTATAACCGT
GGGCTTCTCCCCGACATTATACTATCGACCCAAGGTTACGACCGTTGGGG
AACCCGATTAAATACCATGCAATGACTTTGTATTTATATATAGCCTTTGT
AATGTAGATCACTACTACCATCTGTGAGGGGGTACTACATTGACTCTGGG
TTGTTTTTAATGTTTTTCTGGTGTCCCTGCATGGCGATTAATAATGTAAA
TATACAGTATAACGGTGGGCTTCTCCCCGATATTATACTGTTGACCCAAT
GTAACCACCATAGGGGAACCTGTTTAAATACCATGAAGAGGTTTTGTATT
TGCAGCCTATGATCCCACCTAAACGTTTTGACATTATTTTCCCCCCTAAC
CGGGGGACGCTCAAAAGGTCCAGGTGCTTTTCTGATTTTTCTTTTAAACA
GCCAATGTTCCCACCTGAAACCTTTTGCCTGATCAGAATAGGTTTAGACG
CGTTCAGATTTTCTTCAAACAGGGTTTCTCAATCACCTTCCTTCTGCGGG
GCATGCCTTAATGTTACTCGCGAGAAGGATTCAGCCAATTCCTTTCCCTC
GTCGACCGTGACGTCGAATTTTGTGTTCTACAGTAACGATTTAATCGTTC
TCCACTCGTTGGGCATTTTTTGCTTTTGTTTTTAGTTTTAAGTGAGAAAA
TTCAAAATTCCCGTTAGCCGGGATCGAACTCACGTCCCAACGTGTCAGAA
GGTTACGAGGTTACCTCTGAGCTACCGGGGCGACTGTGAGTGCGTAGATT
TGCATATATATATATATGCAGTACGTTCGTATGTACCAGGTATGTTGTAT
GTATGTTATGTGCTGTTTGCACTTTGTTCATGGATGTCGTCTGTAGACTA
CTCCATCGTATTATACGATCTCCCTTCTTACTTTGTGAATGATGATGGTG
ATAATTCCTTTGTTACTCACGATGATGATGATCGGTTCTGTTTATTATTA
CTAATTAATAAGGTTTTACTCGTCGTCCTTTTCGTACGTGTGTCTCTCTC
ATCTCAATTCTAAGGACTACGATATGCGCGACGCGAGATCATCCCAAGTT
GGAGCGCGTGGTTGCTTTCCTCCGTCACCACCAGGACTTGTACGGGCAAA
AAATGCCTAACTCGGACGAAAGCTACCTCTCCTTCAAGGACAAGAACGTG
AGCCCGAAATTATTGTTGGTATCATCCGCGCTGCGTGCTCCGACTGACCA
CTATGCGTGTGTGCGTGACGGCAACATCCAACTGTTTGTGCAAATGGAAG
TGTTTATTTTGTTTTGTGTGTTCGTACTTTTTTGTCCCTCTGGAGCTGCC
TTCATTTTTTTTTTTTTTTTTTTTTTTTTTGCGTCATCCTTATTTATGTG
TCAAATGTATGAACGCACCAAAAAATGTGCGTTCTCTCCAAATGAATGGT
GCAGGAGCTCTACGACGAATACCTCAAGGTTCAACGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1126:120887..127073+

>mRNA_F-serratus_M_contig1126.1141.1 ID=mRNA_F-serratus_M_contig1126.1141.1|Name=mRNA_F-serratus_M_contig1126.1141.1|organism=Fucus serratus male|type=CDS|length=966bp|location=Sequence derived from alignment at F-serratus_M_contig1126:120887..127073+ (Fucus serratus male)
ATGACACCCGCGCGGTGCTGCTCCCTCGATTGCGCGGCGAGGTTTTGCTC
GACCGTTGGCGATGATAGTACTCAGCTCCACAACCCAGCCTTCCTGCGAC
GAGAGCAAGCAATGTTTGCCGCATTAGCGTGGGAAAAAGATCGTAAAGCA
TTCGTGATCGCGAGAGTCCCTCCGGCAAAGCTATCCAACGGTAGCATGAT
GGCCGCTAATACTCCCGTCTGCAACTTAGCGTTTCGGAAGCTTTTCGGCG
TGTCTGAGACCCTCATCAGCGCATGCAAGCAGACGCCTCGGGCGCGTGCA
TCGAGCTCCACAGAAAGATGACACCCGCGCGGTGCTGCTCCCTCGATTGC
GCGGCGAGGTTTTGCTCGACCGTTGGCGATGATAGTACTCAGCTCCACAA
CCCAGCCTTCCTGCGACGAGAGCAAGCAATGTTTGCCGCATTAGCGTGGG
AAAAAGATCGTAAAGCATTCGTGATCGCGAGAGTCCCTCCGGCAAAGCTA
TCCAACGGTAGCATGATGGCCGCTAATACTCCCGTCTGCAACTTAGCGTT
TCGGAAGCTTTTCGGCGTGTCTGAGACCCTCATCAGCGCATGCAAGCAGA
CGCCTCGGGCGCGTGCATCGAGCTCCACAGAAAGGACTACGATATGCGCG
ACGCGAGATCATCCCAAGTTGGAGCGCGTGGTTGCTTTCCTCCGTCACCA
CCAGGACTTGTACGGGCAAAAAATGCCTAACTCGGACGAAAGCTACCTCT
CCTTCAAGGACAAGAACGACTACGATATGCGCGACGCGAGATCATCCCAA
GTTGGAGCGCGTGGTTGCTTTCCTCCGTCACCACCAGGACTTGTACGGGC
AAAAAATGCCTAACTCGGACGAAAGCTACCTCTCCTTCAAGGACAAGAAC
GAGCTCTACGACGAATACCTCAAGGTTCAACGCGAGCTCTACGACGAATA
CCTCAAGGTTCAACGC
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