mRNA_F-serratus_M_contig1122.1130.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1122.1130.1
Unique NamemRNA_F-serratus_M_contig1122.1130.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1122.1130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1122contigF-serratus_M_contig1122:185859..189123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000680.1
Exons4
Model size2419
Cds size987
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1122.1130.1prot_F-serratus_M_contig1122.1130.1Fucus serratus malepolypeptideF-serratus_M_contig1122 185993..187825 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.992114-UTR-F-serratus_M_contig1122:185858..1859921622929019.992114-UTR-F-serratus_M_contig1122:185858..185992Fucus serratus maleUTRF-serratus_M_contig1122 185859..185992 +
1690962669.0816665-UTR-F-serratus_M_contig1122:185858..1859921690962669.0816665-UTR-F-serratus_M_contig1122:185858..185992Fucus serratus maleUTRF-serratus_M_contig1122 185859..185992 +
1622929020.0675325-UTR-F-serratus_M_contig1122:187825..1891231622929020.0675325-UTR-F-serratus_M_contig1122:187825..189123Fucus serratus maleUTRF-serratus_M_contig1122 187826..189123 +
1690962669.124936-UTR-F-serratus_M_contig1122:187825..1891231690962669.124936-UTR-F-serratus_M_contig1122:187825..189123Fucus serratus maleUTRF-serratus_M_contig1122 187826..189123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.0083246-CDS-F-serratus_M_contig1122:185992..1862431622929020.0083246-CDS-F-serratus_M_contig1122:185992..186243Fucus serratus maleCDSF-serratus_M_contig1122 185993..186243 +
1690962669.0906408-CDS-F-serratus_M_contig1122:185992..1862431690962669.0906408-CDS-F-serratus_M_contig1122:185992..186243Fucus serratus maleCDSF-serratus_M_contig1122 185993..186243 +
1622929020.023371-CDS-F-serratus_M_contig1122:186734..1868211622929020.023371-CDS-F-serratus_M_contig1122:186734..186821Fucus serratus maleCDSF-serratus_M_contig1122 186735..186821 +
1690962669.0978456-CDS-F-serratus_M_contig1122:186734..1868211690962669.0978456-CDS-F-serratus_M_contig1122:186734..186821Fucus serratus maleCDSF-serratus_M_contig1122 186735..186821 +
1622929020.0418363-CDS-F-serratus_M_contig1122:187001..1870681622929020.0418363-CDS-F-serratus_M_contig1122:187001..187068Fucus serratus maleCDSF-serratus_M_contig1122 187002..187068 +
1690962669.1058393-CDS-F-serratus_M_contig1122:187001..1870681690962669.1058393-CDS-F-serratus_M_contig1122:187001..187068Fucus serratus maleCDSF-serratus_M_contig1122 187002..187068 +
1622929020.0542877-CDS-F-serratus_M_contig1122:187243..1878251622929020.0542877-CDS-F-serratus_M_contig1122:187243..187825Fucus serratus maleCDSF-serratus_M_contig1122 187244..187825 +
1690962669.1143131-CDS-F-serratus_M_contig1122:187243..1878251690962669.1143131-CDS-F-serratus_M_contig1122:187243..187825Fucus serratus maleCDSF-serratus_M_contig1122 187244..187825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1122.1130.1

>prot_F-serratus_M_contig1122.1130.1 ID=prot_F-serratus_M_contig1122.1130.1|Name=mRNA_F-serratus_M_contig1122.1130.1|organism=Fucus serratus male|type=polypeptide|length=329bp
MLSSKKGNLLCFQWEIERFQRIHREKIANATAQTKVKRASPRSRRDRLHK
SAKDKQVEADVKLHNAFLLEKMAHVHQLGGCQQRAQHEFQNIKAPLPFGR
ANKNVARAVHEGRFTARRKEHERVRRANATMIIRLASPIRSEIDFNKFEI
DFVKSRVHLRMAQCNHTIGHTSILDAVSTRTPHSEADVSYSGKPQCQIPK
EALTGDARPPGRPTKMQGHKGRPGFSRQLKSRQRPFSAGFVPRRPHDDTG
KNRSTGHIIKAWINQSLYDKAPSDSVEDQISMPSGPERGTKLHRHLPAHR
PHTALGLRRGKDHNDFFYTRAADPGWGG*
back to top

mRNA from alignment at F-serratus_M_contig1122:185859..189123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1122.1130.1 ID=mRNA_F-serratus_M_contig1122.1130.1|Name=mRNA_F-serratus_M_contig1122.1130.1|organism=Fucus serratus male|type=mRNA|length=3265bp|location=Sequence derived from alignment at F-serratus_M_contig1122:185859..189123+ (Fucus serratus male)
GAAGGTTTAGGTGCCGTTCACATTTTTCTTTAAACTACGAACAGAGAAAA
AAATATCCCGCTTTCTTTACAGGCCCGCATTGCGCGCGTGGCGATTCAAT
ATAACGGGATAAGGATAATCAAAAGACTCACAGCATGCTCAGCTCGAAAA
AAGGTAACCTATTGTGCTTCCAGTGGGAGATCGAGCGGTTCCAGCGAATC
CATAGAGAGAAAATAGCGAACGCGACCGCGCAGACCAAAGTGAAACGAGC
CTCACCCCGATCCAGGAGAGACCGCCTGCACAAGTCTGCAAAGGATAAGC
AGGTTGAAGCCGATGTCAAGCTTCATAATGCCTTCCTCTTGGAAAAAATG
GCTCACGTTCACCAACTTGGCGGCTGCCAGCAGAGGTAAATGTTTAAAGA
AAATCTGAACGCGTCGAAACCTTCGATGAATCTGCCGTGTCCCTGATCGT
CCTCCCGGGAAGCAAGGATACTATTAATAGTGGCAGAAAAAGCTCTAGGC
GGGACCAAAAATAAAAATTTCAGCCCCTTTTTGGAGGTAAAGGGCGAAAA
TTGCGTGGCGGATCTGTCCTTTACTTAATGATACTTCTTTATCTTCTCAC
TTCCGAGTAGCGTGTGAGCTCAGAGCGACAGCATTTATTTGCAGATCTTT
GAAGGAAAAATTACACGGCGTAGATACCTAAGTGTCGTAAGAACTACGTG
AAAACTTATAAATTCAATACGTAACTTTTTTGCATCACACATAGACAGGT
ACACGATCGAACCACGACGGCACCCAATTTTAGATATCATTACTTTTCGA
CCCGCCGCTTACTTACATGTTAGCGCTACTTTTTATTGGTTAAATGACGA
ACAACGTGGCGGCGTAACCTGTGCAGGGCTCAACATGAGTTCCAAAACAT
CAAAGCGCCTTTACCCTTTGGGAGAGCTAACAAAAACGTGGCTCGAGCAG
TGCACGAAGGCAGGCAAGGGCGACGGCAGAAAAATACCACACAGTGTTTC
TTGAAGTGTGTGCTCGAAAGTCCCCACCCGCATTCGCCAGTCGCAGTGAT
TTCGTCTGAAGAGTTTTCGATACTTTGTAGAGTTTCTAATGAATTGTGGC
AAAACGGGGACTAATCTGAGTCCATTGTTCCCCGGCACGTCAGGTTCACC
GCAAGGAGGAAAGAACACGAGCGTGTTCGAAGAGCGAATGCGACGATGAT
CATACGCCTGGTAAGTATCTATTATAGCGCCGAGCGATTTGTCAAGTCGT
GGCGGATGAAAACACATGTATGTATTGGCAAGACGCACAAACCCGCAAGC
ATGGTTGCAAAAAACATGGATGCAAAAAACTTTGAGCGCATGCTTCAATT
GCACTCTCCTACAACAATATTGCCGGTGGTGCTAGGCAAGCCCTATCAGG
AGCGAAATCGATTTCAACAAATTCGAGATCGACTTCGTCAAGAGCCGTGT
CCATCTCCGCATGGCTCAATGCAACCACACCATAGGACACACATCCATAT
TGGACGCTGTATCGACTCGGACTCCGCATTCCGAAGCGGATGTCTCTTAC
AGCGGAAAGCCACAGTGCCAAATACCTAAAGAAGCATTGACAGGCGACGC
GCGCCCACCAGGACGTCCTACAAAAATGCAGGGGCACAAAGGGCGACCAG
GGTTTTCACGGCAGTTAAAATCGAGGCAACGACCTTTCTCCGCGGGGTTT
GTCCCACGTCGTCCACATGATGACACGGGTAAAAATCGAAGCACTGGCCA
CATAATAAAAGCCTGGATCAACCAATCCCTTTACGACAAGGCTCCAAGCG
ATAGCGTTGAAGATCAAATATCAATGCCTAGTGGACCTGAAAGGGGAACC
AAGCTTCATCGTCACCTGCCAGCACATCGGCCTCACACCGCCCTGGGATT
GCGTCGGGGCAAAGACCATAACGACTTTTTTTATACGCGCGCCGCCGATC
CAGGATGGGGGGGATAATTCCATAAAGATCCCCCGACCTCCATCTGCGCC
GGAGAGGGTCGAACGGGGTAACTGGCGAAAGCACGACCCAGAATGTTCGA
GAGGGCTCGCCCGCAGATATGCTGCCGTTGAAAGCTACGGGATGGATTGC
GAGCGAGAAAGGTTCGCGGGAGGTTCAAAAGTAGAGCAAGACTTGCACGA
CATCTCTACGGGCATACTAAACCAGGGAGGGGATCTCTGGTATCTTGGGC
GAACGTTGCTTGCGGAGGCAAAGGTGATAGTTAACGGTAGTTCAAAGAGG
AAAAATCAAGATCGAAGAGAGGTAATCCTTCGATGCCGAAGTCTAGACGG
TCTTGTCAGACAGCAGGGACAGGTACGAAAGACCCTTCGAGGCTTTGTTG
TCGAGGCTTCCCTAAAACCTTGCCGGAAATCGTCATGGCCATGTATCGTA
GAAGGACAAGATACGAAGTGCGCAATGGGATCTGCGTCTGTTTCTGTCTT
AGATGTTCAACAATTTTTACGCGCGGCTGCGATCGAAGGTAGTCCGGCTC
TCTCCACGTTCCGAAATGCCTGTGAACTAGACGACCACGGTAACTACGCT
GAGCTTCGGGCGGTTCTCGGGAAGAACGAACAGCGAGATCTTTGCCAGGT
TTTGTTCGAAAGCTCTCAGCTTGTTGTTCGAAAAGGCAGAGTCAGCCTCA
AATTGCTCCAAACGAGTGCTGACGGGGGCTTAAAATTGTCGGTAACTCTC
GGGTATCCCGATGAGGTGTCGCGCTGTGTACCAAGTCATTGTCAACCAAA
CTCAACGGCTACGGAGGAGCAATGCATTCCGGGCAAGGCCGGCGCGGACG
ATGCCGCTATGGCTGGGGGGCGTCCCGAAGACGTTGCCATAACGACGTCC
ACAAGAGGTTTGGAAGCACATGCGGGTGTGCCTCATCAATATTGTGGGGC
GAATGCTGCCAGCAGTGGTGGTGCTGGAGAAAGATCTGTCGCGTTCGACG
CTGTTCGAAATAACCCAAACCTATGTTTGACTGGGTCGATTCGAACGCTC
GAGGCTGAAAGAAAAACGATCGACGGGGCTGCTGAATCGGGCGACGACTT
TGTAGAAGAGGATACCGAGGAATAAGAGAAGGATCAAAGTTTCAAAATAT
ATTGGCAGTTCTCGACCCTTCATGGAGTGAGTTAAGTTGTAGTGGACTAT
ACCATGTATTCATATTAATAGTTAATAGAGTACGGTGATAGGCACGTAAC
AGCGGCAGTGATGTGTAATATTCGGCACGATGTTAGCATAATTTTAGGGT
TAGCGCAAAGACACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1122:185859..189123+

>mRNA_F-serratus_M_contig1122.1130.1 ID=mRNA_F-serratus_M_contig1122.1130.1|Name=mRNA_F-serratus_M_contig1122.1130.1|organism=Fucus serratus male|type=CDS|length=1974bp|location=Sequence derived from alignment at F-serratus_M_contig1122:185859..189123+ (Fucus serratus male)
ATGCTCAGCTCGAAAAAAGGTAACCTATTGTGCTTCCAGTGGGAGATCGA
GCGGTTCCAGCGAATCCATAGAGAGAAAATAGCGAACGCGACCGCGCAGA
CCAAAGTGAAACGAGCCTCACCCCGATCCAGGAGAGACCGCCTGCACAAG
TCTGCAAAGGATAAGCAGGTTGAAGCCGATGTCAAGCTTCATAATGCCTT
CCTCTTGGAAAAAATGGCTCACGTTCACCAACTTGGCGGCTGCCAGCAGA
GATGCTCAGCTCGAAAAAAGGTAACCTATTGTGCTTCCAGTGGGAGATCG
AGCGGTTCCAGCGAATCCATAGAGAGAAAATAGCGAACGCGACCGCGCAG
ACCAAAGTGAAACGAGCCTCACCCCGATCCAGGAGAGACCGCCTGCACAA
GTCTGCAAAGGATAAGCAGGTTGAAGCCGATGTCAAGCTTCATAATGCCT
TCCTCTTGGAAAAAATGGCTCACGTTCACCAACTTGGCGGCTGCCAGCAG
AGGGCTCAACATGAGTTCCAAAACATCAAAGCGCCTTTACCCTTTGGGAG
AGCTAACAAAAACGTGGCTCGAGCAGTGCACGAAGGCAGGGCTCAACATG
AGTTCCAAAACATCAAAGCGCCTTTACCCTTTGGGAGAGCTAACAAAAAC
GTGGCTCGAGCAGTGCACGAAGGCAGGTTCACCGCAAGGAGGAAAGAACA
CGAGCGTGTTCGAAGAGCGAATGCGACGATGATCATACGCCTGGTTCACC
GCAAGGAGGAAAGAACACGAGCGTGTTCGAAGAGCGAATGCGACGATGAT
CATACGCCTGGCAAGCCCTATCAGGAGCGAAATCGATTTCAACAAATTCG
AGATCGACTTCGTCAAGAGCCGTGTCCATCTCCGCATGGCTCAATGCAAC
CACACCATAGGACACACATCCATATTGGACGCTGTATCGACTCGGACTCC
GCATTCCGAAGCGGATGTCTCTTACAGCGGAAAGCCACAGTGCCAAATAC
CTAAAGAAGCATTGACAGGCGACGCGCGCCCACCAGGACGTCCTACAAAA
ATGCAGGGGCACAAAGGGCGACCAGGGTTTTCACGGCAGTTAAAATCGAG
GCAACGACCTTTCTCCGCGGGGTTTGTCCCACGTCGTCCACATGATGACA
CGGGTAAAAATCGAAGCACTGGCCACATAATAAAAGCCTGGATCAACCAA
TCCCTTTACGACAAGGCTCCAAGCGATAGCGTTGAAGATCAAATATCAAT
GCCTAGTGGACCTGAAAGGGGAACCAAGCTTCATCGTCACCTGCCAGCAC
ATCGGCCTCACACCGCCCTGGGATTGCGTCGGGGCAAAGACCATAACGAC
TTTTTTTATACGCGCGCCGCCGATCCAGGATGGGGGGGATAAGCAAGCCC
TATCAGGAGCGAAATCGATTTCAACAAATTCGAGATCGACTTCGTCAAGA
GCCGTGTCCATCTCCGCATGGCTCAATGCAACCACACCATAGGACACACA
TCCATATTGGACGCTGTATCGACTCGGACTCCGCATTCCGAAGCGGATGT
CTCTTACAGCGGAAAGCCACAGTGCCAAATACCTAAAGAAGCATTGACAG
GCGACGCGCGCCCACCAGGACGTCCTACAAAAATGCAGGGGCACAAAGGG
CGACCAGGGTTTTCACGGCAGTTAAAATCGAGGCAACGACCTTTCTCCGC
GGGGTTTGTCCCACGTCGTCCACATGATGACACGGGTAAAAATCGAAGCA
CTGGCCACATAATAAAAGCCTGGATCAACCAATCCCTTTACGACAAGGCT
CCAAGCGATAGCGTTGAAGATCAAATATCAATGCCTAGTGGACCTGAAAG
GGGAACCAAGCTTCATCGTCACCTGCCAGCACATCGGCCTCACACCGCCC
TGGGATTGCGTCGGGGCAAAGACCATAACGACTTTTTTTATACGCGCGCC
GCCGATCCAGGATGGGGGGGATAA
back to top