mRNA_F-serratus_M_contig112.1112.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig112.1112.1
Unique NamemRNA_F-serratus_M_contig112.1112.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig112.1112.1 vs. uniprot
Match: D7FMH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH1_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.350e-67
Identity = 153/254 (60.24%), Postives = 181/254 (71.26%), Query Frame = 3 
Query:  147 IDDQETDMDEASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRKVIRRSRQDLVYFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMEREAQKHRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYRGRGPNEVGPAASAXXXXXXXXXXXXXLAIVDDSEVVETVAAMAAADASALA-----------TVAGSELGGGNVCRACGGPRFNRTVCAKCGEHSSMW 875
            IDDQE DMD +S RE  R EALRR E+   L++A R + RAVRRE+MRWAVRDVRR VI+RSR+DL  F +LARA+RPLEV+ TLSYE RRD+ERDEEAEVR MER+A+K RF  +K+ GEG+  +REVYDAVIS +RDI++ +TF+ARRAK DYRGRGP+EVGPAAS XXXXXXXXXXXXX                                    T   +ELGGG VCRACGGPRF RTVCAKCG +++ W
Sbjct:  184 IDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRREKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDARKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYRGRGPDEVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSW 437
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BLAST of mRNA_F-serratus_M_contig112.1112.1 vs. uniprot
Match: A0A6H5KAU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU5_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.800e-38
Identity = 121/250 (48.40%), Postives = 142/250 (56.80%), Query Frame = 3 
Query:  159 ETDMDEASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRKVIRRSRQDLVYFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMEREAQKHRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYRGRGPNEVGPAASAXXXXXXXXXXXXXLAIVDDSEVVETVAAMAAADASALATVAGSELGGGNVCRACGGPRFNRTVCAKCGEHSSMWLDGAVLNAGGD 908
            E DMD +S RE  R EALRR E+   L++A R + RAVR E+MRWAVRDVRR VI+RSR+DL  F +LARA+RPLEV+ TLSYE RRD+ERDEEAEVR MER+A+K R             +REVYDAV+                                   XXXXXXXXXXXXX                         T   +ELGGG VCRACGGPRF RTVCAKCG +++ W  G V + G D
Sbjct:   33 EADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRLEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRQMERDARKERLA-----------VREVYDAVVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------TTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWR-GEVDSGGED 252
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BLAST of mRNA_F-serratus_M_contig112.1112.1 vs. uniprot
Match: A0A7S2F6R7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F6R7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.440e-18
Identity = 63/156 (40.38%), Postives = 98/156 (62.82%), Query Frame = 3 
Query:  147 IDDQETDMDEASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRKVIRRSRQDLVYFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMEREAQKHRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYR 614
            ++D E D+D+AS RE D     +R EL++    A  H  R VR ER +WAV DVR+KVIRR+R DL  + + A+  RP E   T++Y+     ++DEE  ++MM+ +AQ+ ++  ++ +GEGNQ IR+ YD+VI+   D++   + + R  KTD R
Sbjct:  211 LEDTEADLDDASTREVDELGLRQRMELELCHADAHAHWLRRVRTERCKWAVEDVRKKVIRRARVDLAQYKEAAQQYRPPENLSTVTYKKGHHWKQDEEHIIQMMDNKAQREKYAHLRTEGEGNQTIRQTYDSVIAGCFDLLKNHSHELRHMKTDLR 366
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig112.1112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMH1_ECTSI1.350e-6760.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAU5_9PHAE2.800e-3848.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2F6R7_9STRA2.440e-1840.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig112contigF-serratus_M_contig112:732180..735228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1060
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig112.1112.1prot_F-serratus_M_contig112.1112.1Fucus serratus malepolypeptideF-serratus_M_contig112 732326..735061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.4352498-UTR-F-serratus_M_contig112:732179..7323251622929016.4352498-UTR-F-serratus_M_contig112:732179..732325Fucus serratus maleUTRF-serratus_M_contig112 732180..732325 -
1690962667.2321193-UTR-F-serratus_M_contig112:732179..7323251690962667.2321193-UTR-F-serratus_M_contig112:732179..732325Fucus serratus maleUTRF-serratus_M_contig112 732180..732325 -
1622929016.5426824-UTR-F-serratus_M_contig112:735061..7352281622929016.5426824-UTR-F-serratus_M_contig112:735061..735228Fucus serratus maleUTRF-serratus_M_contig112 735062..735228 -
1690962667.3031392-UTR-F-serratus_M_contig112:735061..7352281690962667.3031392-UTR-F-serratus_M_contig112:735061..735228Fucus serratus maleUTRF-serratus_M_contig112 735062..735228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.451075-CDS-F-serratus_M_contig112:732325..7326071622929016.451075-CDS-F-serratus_M_contig112:732325..732607Fucus serratus maleCDSF-serratus_M_contig112 732326..732607 -
1690962667.240851-CDS-F-serratus_M_contig112:732325..7326071690962667.240851-CDS-F-serratus_M_contig112:732325..732607Fucus serratus maleCDSF-serratus_M_contig112 732326..732607 -
1622929016.4658792-CDS-F-serratus_M_contig112:733343..7334301622929016.4658792-CDS-F-serratus_M_contig112:733343..733430Fucus serratus maleCDSF-serratus_M_contig112 733344..733430 -
1690962667.2488468-CDS-F-serratus_M_contig112:733343..7334301690962667.2488468-CDS-F-serratus_M_contig112:733343..733430Fucus serratus maleCDSF-serratus_M_contig112 733344..733430 -
1622929016.481685-CDS-F-serratus_M_contig112:733680..7337441622929016.481685-CDS-F-serratus_M_contig112:733680..733744Fucus serratus maleCDSF-serratus_M_contig112 733681..733744 -
1690962667.2666302-CDS-F-serratus_M_contig112:733680..7337441690962667.2666302-CDS-F-serratus_M_contig112:733680..733744Fucus serratus maleCDSF-serratus_M_contig112 733681..733744 -
1622929016.4938254-CDS-F-serratus_M_contig112:734020..7341091622929016.4938254-CDS-F-serratus_M_contig112:734020..734109Fucus serratus maleCDSF-serratus_M_contig112 734021..734109 -
1690962667.2747579-CDS-F-serratus_M_contig112:734020..7341091690962667.2747579-CDS-F-serratus_M_contig112:734020..734109Fucus serratus maleCDSF-serratus_M_contig112 734021..734109 -
1622929016.5047169-CDS-F-serratus_M_contig112:734386..7344821622929016.5047169-CDS-F-serratus_M_contig112:734386..734482Fucus serratus maleCDSF-serratus_M_contig112 734387..734482 -
1690962667.2823997-CDS-F-serratus_M_contig112:734386..7344821690962667.2823997-CDS-F-serratus_M_contig112:734386..734482Fucus serratus maleCDSF-serratus_M_contig112 734387..734482 -
1622929016.5294602-CDS-F-serratus_M_contig112:734932..7350611622929016.5294602-CDS-F-serratus_M_contig112:734932..735061Fucus serratus maleCDSF-serratus_M_contig112 734933..735061 -
1690962667.2941403-CDS-F-serratus_M_contig112:734932..7350611690962667.2941403-CDS-F-serratus_M_contig112:734932..735061Fucus serratus maleCDSF-serratus_M_contig112 734933..735061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig112.1112.1

>prot_F-serratus_M_contig112.1112.1 ID=prot_F-serratus_M_contig112.1112.1|Name=mRNA_F-serratus_M_contig112.1112.1|organism=Fucus serratus male|type=polypeptide|length=249bp
MDEASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRK
VIRRSRQDLVYFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMERE
AQKHRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYRG
RGPNEVGPAASAAATAAATTARKAALAIVDDSEVVETVAAMAAADASALA
TVAGSELGGGNVCRACGGPRFNRTVCAKCGEHSSMWLDGAVLNAGGDR*
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mRNA from alignment at F-serratus_M_contig112:732180..735228-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig112.1112.1 ID=mRNA_F-serratus_M_contig112.1112.1|Name=mRNA_F-serratus_M_contig112.1112.1|organism=Fucus serratus male|type=mRNA|length=3049bp|location=Sequence derived from alignment at F-serratus_M_contig112:732180..735228- (Fucus serratus male)
GCCGCTTTACGGTAAAGTTTGGAACATAAAAGTCCAGCCTTGGTTTTTAA
CAAAAACTTCAAAGTGTGGATTACATGCCTGGTACTAAATTACGCTAGCG
TGTGGGAAATATAAGTTTCTTGCCCATTATTCCTAAATCTATGTAGATCG
ACGACCAAGAGACCGACATGGATGAGGCGTCGATGCGGGAGTTTGACCGC
ACGGAGGCGTTACGCAGGAGTGAGTTAAAAGTACGTCTCGATCGAGCAGT
GAGGCACAAAGAGAGGGCTGTTCGGCGAGAACGCATGCGGTGGGCGGTGA
GTCCAGTCAGGCGGAAGTTATCACGAGACGGTACGGCAATAGAGACAGAC
CTCAGAAAAGACAACACGCTACGTACAAGAACCCACTCGATCACGGACTT
GTTTGGGTAGCTGTACTTCATTACTTCGAAGTGGTATTACAGTCGTATCG
TGGAATTTCATATACATTATTGCTGAAGATAGAAAGGAAACAATTCCTTC
GATGGGAAGAGTCTTGTCGCTAGTGCAAACATGGGCTTCCAACATAATAC
ACAAATGGCTCCTCGGGACGAACAACGACGTTCGTTTATTGAAGCCCCTG
TAAAAACCCATGTATATATTTATGTTAAAAGGTTTATATTTTCTGTACGC
CTTACCTACGTTCCCCGCCATTGTAACCGTCAATCGATTGCAACCCATGG
TGATGTGGAATTGTAAAACCTGGATGGATCGTTACTGTTACGACAGGTGC
GGGACGTTCGCCGCAAGGTGATCAGGCGTTCTCGGCAAGACCTGGTGTAC
TTTGCGAAACTGGCACGCGCGAAGCGACCGCTTGAAGTGGAGGTATGCAT
CGCAAGGGATTATATTTTCTCGCCTCCCTATTTCGATTAACCCTGATTCG
CTTGATTATCATATATCAACCTAAATACTAAAATGAATACCGTGTAAAGT
ATAAGGAGACCTCCTGAGAGATTTTCTAAACGCTTCTCTCGCTAGAATAC
ATGGTAAAAGGCAATCATCATCCGAATCGAAACCAACTCAGGGGGCAACG
CGCGCGTCAAACTTTGAAACCCTCCACCCTCTACCCGTCCTACCTTCCGT
GCAAAATCCCCCAAAACAGCACACACTGAGCTATGAGGTGCGTCGCGATC
GTGAGCGAGACGAAGAGGCTGAAGTACGGATGATGGAACGAGAAGCCCAG
AAGCACCGGTGGGGTGCAGAAAAGGACGGGGGGGGTACAAAGGGCCGGAA
TTTGTTACAAAATGAAGCTAGATTCGTAAATGATAAAAGTGATATCTTGG
TCGCCTGGTCCGTTAAACTCGAGATGTGTCCATGGCTTCTCCCAGCGTTT
GTATGCTCCTTTGCACCAGTCGATCCATTTCTTCGCGCTGTCCTTCGTGC
AGGTTTGGGTTTAAACTTACCATATCTACTGTGTGTACTAATCCACCAAA
CACAACATGGACCCGAAATTTACTGAAATGTTAGGTTTGAAGGGGTGAAG
GAGAAGGGGGAAGGCAACCAGGATATTCGAGAAGTCTACGACGCGGTGGT
GAGCTTCGTTGCGTGTCGGTCTTACTCGCCAGCAGGGGTTCATATTTGGT
GCTCTCTTACACTGAAGCGCAGACCGAGATGACATCAAACAACTCGTTCG
TGACGTTTGTATCAATGTTGTTCCACGAAGTCAAACGTTTTCGTACAGTT
CTCACGTGGTTACTCGAGTCGCAGGAAAAAAACAACCATTGAACTCCACG
CCCTGCACCTTGCTCCTGAGCAATGTTACCTCCTCACTGCCGCAACAGAT
ATCAAGTATCCGCGATATTATATCCAAGTCAACCTTCGACGCTCGTCGCG
CGAAGACTGATTACCGGGGACGGGGTCCCAATGAGGTGAGCGGGGCTACT
GGGCGGCTCTGTGCCCAACGGACGGGATGAAACCATGAATGCCGTGAACC
TAGCCGGTACTTTCAACATGCCCACTTCATACCAATAGTGGGTGTGGGAA
AGAGGGGCGAATATTAATTGGTCCATGGTGACCTGCCAAGGCAGCACTCG
TTCGGGACTACCTTGATGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCA
GTGAACGCCATCGGTACGCAACTGCGTGACCCGATAAACTCGGGACTGAC
CCGATGGCGTATGGCGGTTTCATAAATGGACGCCGCCGCGGAACTCGGGA
GGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAG
GCTGACGCGGACGGAACGGCTGAACCCGTCTCGCGAGACCAAATTCTCAG
GCACGCACGGGGACAGGGGATTGTTCATTTTCCCTGTTCAGCTGACCACG
AGCAGGATTGGCAACCTTACACGGTTGATCCATACTCTGCTATATGTGAT
GACCATACATACATACATACATACATACATACATACATACATACATACAT
ACTGAAACAGGCTATGGAGCGTGTTCCAACCGCGCTTGATCCTAATGACG
CTACGGAACCGCATTAGTAGCCACGCACGGTACTTTTCTCCGAAACCTTC
CCTCCGAATCCCCAACCCCATGAATCGACGTTCCACATTCAATGCCTAGC
CGCGCGTTATCTTGGCGTCAGGTCGGCCCCGCAGCATCAGCGGCTGCAAC
CGCCGCCGCCACCACCGCAAGAAAGGCCGCATTGGCCATCGTAGACGATA
GTGAGGTAGTTGAAACCGTAGCCGCGATGGCTGCGGCCGACGCCTCGGCG
TTAGCTACAGTGGCTGGCTCAGAACTAGGCGGGGGAAACGTTTGCCGCGC
GTGCGGTGGTCCTAGGTTCAACAGGACCGTCTGCGCCAAGTGCGGGGAGC
ACTCGAGTATGTGGTTGGACGGGGCAGTGTTGAACGCCGGTGGCGATCGT
TAGTCGTGTACAATTTTGAGCCGCACTCTCGCGTCTCGTTTACACTTTCG
AATAACTCAAACGACGCGAAACAATGGTGACTTAGTGGTGGATAGCGCCG
GAGCATATCGGTGGGTAGCTTTGCCAGAAGGTGGACGTCCATTGCGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig112:732180..735228-

>mRNA_F-serratus_M_contig112.1112.1 ID=mRNA_F-serratus_M_contig112.1112.1|Name=mRNA_F-serratus_M_contig112.1112.1|organism=Fucus serratus male|type=CDS|length=1494bp|location=Sequence derived from alignment at F-serratus_M_contig112:732180..735228- (Fucus serratus male)
ATGGATGAGGCGTCGATGCGGGAGTTTGACCGCACGGAGGCGTTACGCAG
GAGTGAGTTAAAAGTACGTCTCGATCGAGCAGTGAGGCACAAAGAGAGGG
CTGTTCGGCGAGAACGCATGCGGTGGGCGATGGATGAGGCGTCGATGCGG
GAGTTTGACCGCACGGAGGCGTTACGCAGGAGTGAGTTAAAAGTACGTCT
CGATCGAGCAGTGAGGCACAAAGAGAGGGCTGTTCGGCGAGAACGCATGC
GGTGGGCGGTGCGGGACGTTCGCCGCAAGGTGATCAGGCGTTCTCGGCAA
GACCTGGTGTACTTTGCGAAACTGGCACGCGCGAAGCGACCGCTTGAAGT
GGAGGTGCGGGACGTTCGCCGCAAGGTGATCAGGCGTTCTCGGCAAGACC
TGGTGTACTTTGCGAAACTGGCACGCGCGAAGCGACCGCTTGAAGTGGAG
CACACACTGAGCTATGAGGTGCGTCGCGATCGTGAGCGAGACGAAGAGGC
TGAAGTACGGATGATGGAACGAGAAGCCCAGAAGCACCGCACACACTGAG
CTATGAGGTGCGTCGCGATCGTGAGCGAGACGAAGAGGCTGAAGTACGGA
TGATGGAACGAGAAGCCCAGAAGCACCGGTTTGAAGGGGTGAAGGAGAAG
GGGGAAGGCAACCAGGATATTCGAGAAGTCTACGACGCGGTGGTTTGAAG
GGGTGAAGGAGAAGGGGGAAGGCAACCAGGATATTCGAGAAGTCTACGAC
GCGGTGATATCAAGTATCCGCGATATTATATCCAAGTCAACCTTCGACGC
TCGTCGCGCGAAGACTGATTACCGGGGACGGGGTCCCAATGAGATATCAA
GTATCCGCGATATTATATCCAAGTCAACCTTCGACGCTCGTCGCGCGAAG
ACTGATTACCGGGGACGGGGTCCCAATGAGGTCGGCCCCGCAGCATCAGC
GGCTGCAACCGCCGCCGCCACCACCGCAAGAAAGGCCGCATTGGCCATCG
TAGACGATAGTGAGGTAGTTGAAACCGTAGCCGCGATGGCTGCGGCCGAC
GCCTCGGCGTTAGCTACAGTGGCTGGCTCAGAACTAGGCGGGGGAAACGT
TTGCCGCGCGTGCGGTGGTCCTAGGTTCAACAGGACCGTCTGCGCCAAGT
GCGGGGAGCACTCGAGTATGTGGTTGGACGGGGCAGTGTTGAACGCCGGT
GGCGATCGTTAGGTCGGCCCCGCAGCATCAGCGGCTGCAACCGCCGCCGC
CACCACCGCAAGAAAGGCCGCATTGGCCATCGTAGACGATAGTGAGGTAG
TTGAAACCGTAGCCGCGATGGCTGCGGCCGACGCCTCGGCGTTAGCTACA
GTGGCTGGCTCAGAACTAGGCGGGGGAAACGTTTGCCGCGCGTGCGGTGG
TCCTAGGTTCAACAGGACCGTCTGCGCCAAGTGCGGGGAGCACTCGAGTA
TGTGGTTGGACGGGGCAGTGTTGAACGCCGGTGGCGATCGTTAG
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