mRNA_F-serratus_M_contig112.1108.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 231 bits (589), Expect = 3.080e-66 Identity = 116/223 (52.02%), Postives = 159/223 (71.30%), Query Frame = 1
Query: 46 VDNITVPACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVERPIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVV 714
V++ VP C GV+T+G+ G+TL L++L G+YRTS +S+ VL+CY+EEACIGG++ YC EGY G YCA C +GYASG+Q+SC C G R+ IG +VA+ V + ALV+A L VV+ PD W R + RDR+V+A+PLT+IKIV+V+WQI+TQFS VVNV YP Y +FLA L+V+N +LGF+L++SC+V+ NFY RL T+ P+VV
Sbjct: 585 VNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPDTASTWGKRLTSCRDRIVKAVPLTSIKIVVVAWQIVTQFSSVVNVVYPDIYESFLAVLNVVNFDLGFLLSVSCIVDVNFYGRLFFTTVGPLVV 807
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 197 bits (501), Expect = 3.410e-54 Identity = 110/244 (45.08%), Postives = 155/244 (63.52%), Query Frame = 1
Query: 1 SRCTDPRCDVPVGIG---VDNITVPACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVERPIPDRR--KMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVVL 717
SRC CD + VD T+P C PEG TT G TL TL++L GFYR+S S ++ EC+ ++AC GGS TYCAEGY GPYCA C GY+ G+ +C C G +K++ + A A+ + + A +V+ L VVE P ++ K W + R+ + +PLTA+KIV+V WQI+TQ+S V V+YP AY +FL+ + V+NL+LGFIL+ +CV +TNFY RL++ATI P++VL
Sbjct: 547 SRCAS-ECDSELESAAELVDAETLPTCEEAPEGSRTT-RRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSALVFAAAIGALALAAVVALVSRLVSVVEVGPPQQQGSKGWRRTCSAWQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVL 788
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 193 bits (490), Expect = 1.020e-52 Identity = 103/231 (44.59%), Postives = 150/231 (64.94%), Query Frame = 1
Query: 46 VDNITVPACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVE-------RPIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVVL 717
VD T+P C PEG TT G TL TL+VL GFYR+S S ++ EC+ ++AC GGS TYC+EGY GPYCA C GY+ G+ +C C G++K++ + A A+ ++ + A ++V+ L VVE K W ++ R+ + +PLTA+KIV+V WQI+TQ+S V ++YP AY +FL+ + V+NL+LGFIL+ +CV +TNFY RL++ATI P++VL
Sbjct: 540 VDADTLPTCETAPEGSRTT-RRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSALVFAAAIGLLALAAVMVLVSRLVSVVEVGPRQQXXXXXXGSKGWRRTCSALQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVL 769
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 187 bits (476), Expect = 7.580e-51 Identity = 106/230 (46.09%), Postives = 144/230 (62.61%), Query Frame = 1
Query: 49 DNITV------PACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVER-PIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVVL 717
D +TV PAC VPEG TT G TL TL++L G+YR+S S ++ EC+ E+AC GG YCA GY GPYCA C G++ G+ +SC C G ++R AV V+ + A + A L VVE P W+ + + R+ + +PLTAIKIV+V WQI+TQ+S V V+YP AY +FL+ + V+NL+LGFIL+L+CV +T+FY RL+L TI P VVL
Sbjct: 565 DEVTVADPDLLPACEAVPEGAQTTSRGG-TLATLEILPGYYRSSATSTDIRECFYEDACEGGKVVGEYCAAGYTGPYCAVCTAGFSPGYFHSCKSCMGDSRRRAFYVVSAVGVLVLLAVVFMAAKLVSVVETTPSSKAPSRWQQKRSVWQARMKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDFLSVVDVVNLDLGFILSLACVCDTDFYDRLLLTTICPAVVL 793
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE) HSP 1 Score: 183 bits (465), Expect = 2.960e-50 Identity = 106/233 (45.49%), Postives = 144/233 (61.80%), Query Frame = 1
Query: 49 DNITV------PACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVE----RPIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVVL 717
D +TV PAC VPEG TT G TL TL++L G+YR+ S ++ EC+ E+AC GG YCA GY+GPYCA C G++ G+ +SC C G ++R V + + A + A L VVE R P R W+ + R R+ + +PLTAIKIV+V WQI+TQ+S V V+YP AY +FL+ + V+NL+LGFIL+L+CV +T+FY RL+L TI P VVL
Sbjct: 423 DEVTVADPDLLPACEAVPEGAQTTTRGG-TLATLEILPGYYRSLATSTDIRECFFEDACEGGQVVGEYCATGYSGPYCAVCTAGFSRGYFHSCKSCMGDSRRRAFYVVSTVGALVLLAVVFLAAKLVSVVEMTPSRKAPSR---WQRKRSVWRARIKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDFLSVIDVVNLDLGFILSLACVYDTDFYDRLLLTTICPAVVL 651
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 181 bits (458), Expect = 6.830e-49 Identity = 101/241 (41.91%), Postives = 148/241 (61.41%), Query Frame = 1
Query: 1 SRCTDPRCDVPVGIGVDNITVPACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVE--RPIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVVL 717
+RC+ +P + + + T+P C+ + EG + +SG T+ TLD+ G+YRTS +S+ V+ECY AC GG++ + YCA+GY GPYC+ C GYA G Y CH C G++ + +G A A+V L VV+ R I D R + + R + +V A PLT +KIV+V+WQIITQF + YP Y +FL L+ +NL++GFIL+ SC V T+F+ RL++ATI P+VVL
Sbjct: 301 ARCSADCDAIPSSVTMADSTIPVCLELMEGTKAS-SSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVGLAAXXXXXXXXXXAVVATDLVRVVDGDRSIKDARTL-KGRLSRFQAFVVNAFPLTTVKIVVVAWQIITQFGAIAGFVYPEEYQDFLNVLTPVNLDIGFILSYSCFVTTDFFDRLLIATIGPVVVL 539
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.250e-48 Identity = 104/241 (43.15%), Postives = 147/241 (61.00%), Query Frame = 1
Query: 1 SRCTDPRCDVPVGIGVDNITVPACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVERP--IPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVVL 717
+RC+ +P + + + T+P CV EG + +SG T+ TLD+ G+YRTS +S+ V+ECY AC GG++ YCA+GY GPYC+ C GYA G Y CH C G++ + +G A A+V A L VV+ I D R + + R +V A PLT +KIV+V+WQIITQF + YP Y +FL AL+ +NL++GFIL+ SCVV T+F+ RL++ATI P+VVL
Sbjct: 542 ARCSADCDAIPSSVTMADSTIPVCVESMEGTKAS-SSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVGVAXXXXXXXXXXXAVVAADLVRVVDGDDSIKDARTL-KGRLSRFHAFVVTAFPLTTVKIVVVAWQIITQFGAIAGFVYPEEYQDFLNALTPVNLDIGFILSYSCVVITDFFDRLLIATIGPVVVL 780
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 147 bits (371), Expect = 8.450e-37 Identity = 87/220 (39.55%), Postives = 132/220 (60.00%), Query Frame = 1
Query: 55 ITVPACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGGSNADT-YCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVERPIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIV 711
+ VP C + E +T+ + +TLE L + G++R + S+EVL CY EAC+GG YC EGY GPYCA C G+++ F ++C C SA GI AVA+ V IFA +VV+++ +R R + +R+ IPL ++KIV+V+WQ++TQF+ V N+ YP Y FL L + N +LG+IL+ CV + +F+ RL+++TI PI+
Sbjct: 940 LLVPMCRDLLEH-STSPDGKLTLEALSIQRGYWRATTTSEEVLACYHPEACLGGVTGTAGYCLEGYQGPYCAVCSHGFSAQFGFTCRECSDSA--GGIVLAVALAVAGIFAAVVVVSYVTS-------GKRN---GRGQGIVERVALYIPLQSVKIVVVAWQVVTQFTVVANITYPDVYQTFLDGLKLFNFDLGWILSAGCVTDVDFHDRLLMSTIGPII 1146
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.940e-36 Identity = 85/219 (38.81%), Postives = 128/219 (58.45%), Query Frame = 1
Query: 64 PACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGG-SNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVERPIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIVVL 717
P C V + +T+ +TL+TL + GF+R S S EVL CY +AC+GG + A YC EGY GPYC C GY ++C +C ++ GI AV + ++ +F VV+++ ++ R + + + R IPL ++KIV+VSWQI+TQF+ V NV YP Y + L L V N +L ++L+ CVV+ NF+ RL+++TI+PIV L
Sbjct: 1033 PICTEVMDH-STSDGGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFACSKCSENSA-GGIAVAVVLALLIVFLAVAVVSYVTS---------GEVGMGRKGGIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFHGRLLVSTISPIVAL 1240
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 145 bits (365), Expect = 5.130e-36 Identity = 86/218 (39.45%), Postives = 134/218 (61.47%), Query Frame = 1
Query: 61 VPACVVVPEGVNTTGNSGMTLETLDVLSGFYRTSNKSKEVLECYREEACIGG-SNADTYCAEGYAGPYCAACGKGYASGFQYSCHRCQGSAKRAGIGGAVAVLVVTIFAGALVVAHLAGVVERPIPDRRKMWETRALNVRDRLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYGNFLAALSVINLNLGFILALSCVVETNFYARLVLATIAPIV 711
VP C E N++G + +TL+ L + G++R + S+ VLECY +AC+GG + +++YC EGY GPYCA C GY + +C +C A +G +V+V + +F ALV ++G E RA V +R R +PL ++KIV+V+WQI+TQF+ V N+++P Y FL AL + N +LG++L+ CV + +F+ RL+++TIAPIV
Sbjct: 499 VPKCSDALEHSNSSGGT-VTLDALVIEPGYWRATPSSENVLECYNADACLGGVTGSESYCLEGYEGPYCAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGL-LFTVALVSYAVSG-----------ESEGRARGVVERTGRFVPLQSVKIVIVAWQILTQFTSVANIRFPHVYQRFLDALELFNFDLGWVLSAGCVFDVDFHDRLLVSTIAPIV 703 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig112.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig112.1108.1 >prot_F-serratus_M_contig112.1108.1 ID=prot_F-serratus_M_contig112.1108.1|Name=mRNA_F-serratus_M_contig112.1108.1|organism=Fucus serratus male|type=polypeptide|length=239bp SRCTDPRCDVPVGIGVDNITVPACVVVPEGVNTTGNSGMTLETLDVLSGFback to top mRNA from alignment at F-serratus_M_contig112:184360..185531+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig112.1108.1 ID=mRNA_F-serratus_M_contig112.1108.1|Name=mRNA_F-serratus_M_contig112.1108.1|organism=Fucus serratus male|type=mRNA|length=1172bp|location=Sequence derived from alignment at F-serratus_M_contig112:184360..185531+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig112:184360..185531+ >mRNA_F-serratus_M_contig112.1108.1 ID=mRNA_F-serratus_M_contig112.1108.1|Name=mRNA_F-serratus_M_contig112.1108.1|organism=Fucus serratus male|type=CDS|length=1434bp|location=Sequence derived from alignment at F-serratus_M_contig112:184360..185531+ (Fucus serratus male)back to top |