mRNA_F-serratus_M_contig112.1107.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig112.1107.1
Unique NamemRNA_F-serratus_M_contig112.1107.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig112.1107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig112contigF-serratus_M_contig112:128803..131482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2611
Cds size1647
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig112.1107.1prot_F-serratus_M_contig112.1107.1Fucus serratus malepolypeptideF-serratus_M_contig112 129337..131052 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929015.04295-UTR-F-serratus_M_contig112:128802..1293361622929015.04295-UTR-F-serratus_M_contig112:128802..129336Fucus serratus maleUTRF-serratus_M_contig112 128803..129336 -
1690962666.57489-UTR-F-serratus_M_contig112:128802..1293361690962666.57489-UTR-F-serratus_M_contig112:128802..129336Fucus serratus maleUTRF-serratus_M_contig112 128803..129336 -
1622929015.1180694-UTR-F-serratus_M_contig112:131052..1314821622929015.1180694-UTR-F-serratus_M_contig112:131052..131482Fucus serratus maleUTRF-serratus_M_contig112 131053..131482 -
1690962666.6150718-UTR-F-serratus_M_contig112:131052..1314821690962666.6150718-UTR-F-serratus_M_contig112:131052..131482Fucus serratus maleUTRF-serratus_M_contig112 131053..131482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929015.0579267-CDS-F-serratus_M_contig112:129336..1301021622929015.0579267-CDS-F-serratus_M_contig112:129336..130102Fucus serratus maleCDSF-serratus_M_contig112 129337..130102 -
1690962666.5925899-CDS-F-serratus_M_contig112:129336..1301021690962666.5925899-CDS-F-serratus_M_contig112:129336..130102Fucus serratus maleCDSF-serratus_M_contig112 129337..130102 -
1622929015.0973406-CDS-F-serratus_M_contig112:130171..1310521622929015.0973406-CDS-F-serratus_M_contig112:130171..131052Fucus serratus maleCDSF-serratus_M_contig112 130172..131052 -
1690962666.606419-CDS-F-serratus_M_contig112:130171..1310521690962666.606419-CDS-F-serratus_M_contig112:130171..131052Fucus serratus maleCDSF-serratus_M_contig112 130172..131052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig112.1107.1

>prot_F-serratus_M_contig112.1107.1 ID=prot_F-serratus_M_contig112.1107.1|Name=mRNA_F-serratus_M_contig112.1107.1|organism=Fucus serratus male|type=polypeptide|length=549bp
MDSEGMSSSAGGQFGGGTLGGSGMVSNLVLNSTEVRPPYSLLVQKSSLSE
AVAKQFRTAYVDYREKIAVQTAQDGIPRRVARVDELMALSHRRTIAMMFY
RNARDLSELQLWDGLGKIAKVQRGADIDAYQLQRDLQQLLQWSAKRSLSN
NLTHVTGCLVGYLEESNLTSTFMKEDGSWLKGPGKIVARLWIDGLTPSRF
QRAVRCRCELMSVEGDPAEVMEVTQKMVEKYEKAEQLLGVSVPVGNGNGD
GGKVAVGVSVMSAGSSPQKTSSFMGRCDGSGESRYISTEKPKDRSGKSRS
NWSDESRSISTEKPKAVSAAAVTQGPSCRFRDQLKVEEGPWSRTRLRQQG
GDRSVSHRAVFVGPLSSDSGGDDHVWVKMPRAAVEEQLAAGPESSNIGDS
ESETSVTHSRRITGGTCMEALGDVDIRAVDVEPVQLQCSSNVVVPGDMVG
DSMTVGTVLDSGSGTTCPSEQLTQQMEQHFRDEPQVHPCVKEMSVPLANR
QKVVVRNQPAKISKVQAGAREESTRLSIGRQQRETASTEQSKQFDPGG*
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mRNA from alignment at F-serratus_M_contig112:128803..131482-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig112.1107.1 ID=mRNA_F-serratus_M_contig112.1107.1|Name=mRNA_F-serratus_M_contig112.1107.1|organism=Fucus serratus male|type=mRNA|length=2680bp|location=Sequence derived from alignment at F-serratus_M_contig112:128803..131482- (Fucus serratus male)
CTGGGTGGTTACCAGAATGCGAGTAGGATTATAACGTGAAGGGTATATGT
TTGCATTGGCATGATTGGTCGAATGCAATATGATATTAGTGCAAGAACAT
GCAGAACGTAGTTATTTGGAACTTCCTTGGGTTCCAGGATGTCGCTTGTT
CTTACTTCCTTTCTTGGCTAGGCTTGGGCGTGGGGCGCCCGTGCTGATAA
TGAAGACTTTGGGCTTGTGACGGTACTACAAGGGGAGTCCCCAAAGCAAT
AACTGATCTCGCCTAAACGCGAGACTACAAATCTTAAGATTTGGGTCCCG
ATCGTGTTATCGACGGATCATCTGGACGGGCTGTGGAGCAGCCTATCAGG
TTCCTGCTGGACTTTATAAGGAGAGAGTCTAGTGTGGAAGATTTGTGGTC
GCTGGGTCTTGGATCGAGGGAGATTCTAAGATGGATAGCGAAGGAATGTC
GAGCTCGGCTGGAGGCCAGTTCGGTGGCGGTACTCTTGGAGGAAGTGGCA
TGGTGAGCAACTTGGTTTTGAACTCGACTGAGGTTAGGCCACCATACTCT
TTACTAGTACAAAAAAGTTCTCTCTCCGAAGCTGTTGCGAAACAGTTTAG
GACAGCGTATGTTGATTACAGAGAGAAGATTGCGGTTCAGACCGCTCAGG
ATGGAATTCCTAGGCGCGTTGCACGAGTTGACGAGTTGATGGCGTTGAGT
CATCGGCGTACTATCGCGATGATGTTTTACAGAAACGCTCGTGATCTGAG
TGAACTGCAACTTTGGGACGGCCTAGGAAAGATTGCCAAGGTTCAGCGTG
GCGCTGATATTGATGCTTACCAACTGCAGCGTGACCTGCAACAACTATTG
CAGTGGAGTGCCAAGCGTTCTCTTTCCAATAACTTGACCCACGTGACTGG
ATGTCTTGTGGGATACCTGGAGGAGAGCAATCTAACCAGTACATTTATGA
AGGAGGATGGTAGCTGGTTAAAAGGTCCGGGTAAAATTGTTGCACGCCTG
TGGATTGATGGTCTGACCCCGTCGAGGTTCCAGAGGGCAGTGCGCTGCCG
CTGTGAACTCATGTCTGTTGAGGGTGACCCTGCCGAGGTAATGGAGGTCA
CGCAGAAGATGGTGGAAAAGTATGAGAAGGCTGAACAGCTTCTCGGGGTC
AGTGTCCCAGTGGGCAATGGCAACGGTGATGGCGGCAAGGTAGCCGTTGG
GGTTTCAGTTATGTCAGCTGGTTCAAGCCCCCAAAAGACTTCGTCATTCA
TGGGACGGTGTGATGGGTCTGGTGAGTCTCGGTATATTAGTACTGAGAAG
CCGAAAGATAGGTCTGGTAAATCTCGGTCTAATTGGTCTGATGAATCTCG
GTATATTAGTACTGAGAAGCCGAAAGATAGGTCTGGTAAATCTCGGTCTA
ATTGGTCTGATGAATCTCGGTCTATTAGTACTGAGAAGCCGAAAGCGGTA
TCGGCGGCGGCTGTAACGCAGGGACCTTCTTGCCGGTTTCGAGACCAGCT
GAAAGTGGAGGAAGGTCCATGGAGTAGGACTCGGTTGCGGCAGCAGGGAG
GCGACAGGAGCGTCTCGCATCGGGCCGTGTTTGTGGGGCCACTATCGTCG
GATAGTGGTGGTGATGACCATGTATGGGTGAAGATGCCGCGAGCTGCCGT
CGAGGAGCAGCTAGCTGCTGGACCGGAGTCTTCCAACATTGGTGATTCGG
AGAGTGAGACATCTGTGACTCATTCTCGACGCATCACTGGTGGTACGTGC
ATGGAAGCGCTTGGTGATGTGGACATTCGGGCGGTTGATGTCGAGCCAGT
TCAACTTCAATGCTCATCAAACGTCGTTGTGCCGGGAGATATGGTCGGTG
ACTCAATGACGGTGGGCACTGTTTTAGACTCCGGATCGGGTACTACTTGT
CCGTCGGAACAGTTGACGCAGCAGATGGAACAACATTTCCGAGACGAACC
ACAAGTTCATCCATGTGTGAAGGAGATGTCTGTTCCGCTGGCGAATAGAC
AGAAGGTTGTGGTGAGGAATCAACCAGCAAAAATTTCGAAAGTACAAGCC
GGCGCTCGCGAGGAGTCTACGAGACTGTCGATTGGCCGGCAGCAACGAGA
GACGGCTTCGACTGAGCAAAGCAAGCAGTTCGACCCAGGAGGGTGACGGA
GGAGACTTTACTTTCCGTCGAAAACGGATTCCGCTGTGCTTTCCTTTGTC
TGTATGTCTCGTATTTCTACCTTGTTGTATTTTTTCTGTCTTGTCCGCAA
AGCAGGTACGAGAGGCGAGGATAATTTCCGCTCAAGGATGCGAGAGCAAT
TGAGATGCAAACCAGATGCGTGAACTGCTGTACTACGACAGGAGCGTGCA
TCGTCATCTCCATTTGCGTTAACGAAGGGTAGATGGAAGAGGATGTGACC
GAGTTTGTTCAACAGTGTCTACACTGTGTGAACTCTCGGGCGGGGAATGT
GGTCCCCGTCCGTTAGGTGAGATACTTTATGGGATGAAGATCTCATGAAC
TTCTGAGGTGGGTTTTGTTGCGATCAATGCATTTACGGATCTGTCTTAGA
CGTACTGGAGCGTGGGTTCAAGGAACTAATGCAGGGGGCGTCTAGCTTGT
ATCCCAGTGGGAAATCATTGAAGTATGTTGCTGTCGAGTTTGGGTTTGCG
CTGGCTACTGAAATGACCTTGGGTTAAGTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig112:128803..131482-

>mRNA_F-serratus_M_contig112.1107.1 ID=mRNA_F-serratus_M_contig112.1107.1|Name=mRNA_F-serratus_M_contig112.1107.1|organism=Fucus serratus male|type=CDS|length=3294bp|location=Sequence derived from alignment at F-serratus_M_contig112:128803..131482- (Fucus serratus male)
ATGGATAGCGAAGGAATGTCGAGCTCGGCTGGAGGCCAGTTCGGTGGCGG
TACTCTTGGAGGAAGTGGCATGGTGAGCAACTTGGTTTTGAACTCGACTG
AGGTTAGGCCACCATACTCTTTACTAGTACAAAAAAGTTCTCTCTCCGAA
GCTGTTGCGAAACAGTTTAGGACAGCGTATGTTGATTACAGAGAGAAGAT
TGCGGTTCAGACCGCTCAGGATGGAATTCCTAGGCGCGTTGCACGAGTTG
ACGAGTTGATGGCGTTGAGTCATCGGCGTACTATCGCGATGATGTTTTAC
AGAAACGCTCGTGATCTGAGTGAACTGCAACTTTGGGACGGCCTAGGAAA
GATTGCCAAGGTTCAGCGTGGCGCTGATATTGATGCTTACCAACTGCAGC
GTGACCTGCAACAACTATTGCAGTGGAGTGCCAAGCGTTCTCTTTCCAAT
AACTTGACCCACGTGACTGGATGTCTTGTGGGATACCTGGAGGAGAGCAA
TCTAACCAGTACATTTATGAAGGAGGATGGTAGCTGGTTAAAAGGTCCGG
GTAAAATTGTTGCACGCCTGTGGATTGATGGTCTGACCCCGTCGAGGTTC
CAGAGGGCAGTGCGCTGCCGCTGTGAACTCATGTCTGTTGAGGGTGACCC
TGCCGAGGTAATGGAGGTCACGCAGAAGATGGTGGAAAAGTATGAGAAGG
CTGAACAGCTTCTCGGGGTCAGTGTCCCAGTGGGCAATGGCAACGGTGAT
GGCGGCAAGGTAGCCGTTGGGGTTTCAGTTATGTCAGCTGGTTCAAGCCC
CCAAAAGACTTCGTCATTCATGGGACGGTGTGATGGGTCTGGTGAGTCTC
GGTATATTAGTACTGAGAAGCCGAAAGATAGATGGATAGCGAAGGAATGT
CGAGCTCGGCTGGAGGCCAGTTCGGTGGCGGTACTCTTGGAGGAAGTGGC
ATGGTGAGCAACTTGGTTTTGAACTCGACTGAGGTTAGGCCACCATACTC
TTTACTAGTACAAAAAAGTTCTCTCTCCGAAGCTGTTGCGAAACAGTTTA
GGACAGCGTATGTTGATTACAGAGAGAAGATTGCGGTTCAGACCGCTCAG
GATGGAATTCCTAGGCGCGTTGCACGAGTTGACGAGTTGATGGCGTTGAG
TCATCGGCGTACTATCGCGATGATGTTTTACAGAAACGCTCGTGATCTGA
GTGAACTGCAACTTTGGGACGGCCTAGGAAAGATTGCCAAGGTTCAGCGT
GGCGCTGATATTGATGCTTACCAACTGCAGCGTGACCTGCAACAACTATT
GCAGTGGAGTGCCAAGCGTTCTCTTTCCAATAACTTGACCCACGTGACTG
GATGTCTTGTGGGATACCTGGAGGAGAGCAATCTAACCAGTACATTTATG
AAGGAGGATGGTAGCTGGTTAAAAGGTCCGGGTAAAATTGTTGCACGCCT
GTGGATTGATGGTCTGACCCCGTCGAGGTTCCAGAGGGCAGTGCGCTGCC
GCTGTGAACTCATGTCTGTTGAGGGTGACCCTGCCGAGGTAATGGAGGTC
ACGCAGAAGATGGTGGAAAAGTATGAGAAGGCTGAACAGCTTCTCGGGGT
CAGTGTCCCAGTGGGCAATGGCAACGGTGATGGCGGCAAGGTAGCCGTTG
GGGTTTCAGTTATGTCAGCTGGTTCAAGCCCCCAAAAGACTTCGTCATTC
ATGGGACGGTGTGATGGGTCTGGTGAGTCTCGGTATATTAGTACTGAGAA
GCCGAAAGATAGGTCTGGTAAATCTCGGTCTAATTGGTCTGATGAATCTC
GGTCTATTAGTACTGAGAAGCCGAAAGCGGTATCGGCGGCGGCTGTAACG
CAGGGACCTTCTTGCCGGTTTCGAGACCAGCTGAAAGTGGAGGAAGGTCC
ATGGAGTAGGACTCGGTTGCGGCAGCAGGGAGGCGACAGGAGCGTCTCGC
ATCGGGCCGTGTTTGTGGGGCCACTATCGTCGGATAGTGGTGGTGATGAC
CATGTATGGGTGAAGATGCCGCGAGCTGCCGTCGAGGAGCAGCTAGCTGC
TGGACCGGAGTCTTCCAACATTGGTGATTCGGAGAGTGAGACATCTGTGA
CTCATTCTCGACGCATCACTGGTGGTACGTGCATGGAAGCGCTTGGTGAT
GTGGACATTCGGGCGGTTGATGTCGAGCCAGTTCAACTTCAATGCTCATC
AAACGTCGTTGTGCCGGGAGATATGGTCGGTGACTCAATGACGGTGGGCA
CTGTTTTAGACTCCGGATCGGGTACTACTTGTCCGTCGGAACAGTTGACG
CAGCAGATGGAACAACATTTCCGAGACGAACCACAAGTTCATCCATGTGT
GAAGGAGATGTCTGTTCCGCTGGCGAATAGACAGAAGGTTGTGGTGAGGA
ATCAACCAGCAAAAATTTCGAAAGTACAAGCCGGCGCTCGCGAGGAGTCT
ACGAGACTGTCGATTGGCCGGCAGCAACGAGAGACGGCTTCGACTGAGCA
AAGCAAGCAGTTCGACCCAGGAGGGTGAGTCTGGTAAATCTCGGTCTAAT
TGGTCTGATGAATCTCGGTCTATTAGTACTGAGAAGCCGAAAGCGGTATC
GGCGGCGGCTGTAACGCAGGGACCTTCTTGCCGGTTTCGAGACCAGCTGA
AAGTGGAGGAAGGTCCATGGAGTAGGACTCGGTTGCGGCAGCAGGGAGGC
GACAGGAGCGTCTCGCATCGGGCCGTGTTTGTGGGGCCACTATCGTCGGA
TAGTGGTGGTGATGACCATGTATGGGTGAAGATGCCGCGAGCTGCCGTCG
AGGAGCAGCTAGCTGCTGGACCGGAGTCTTCCAACATTGGTGATTCGGAG
AGTGAGACATCTGTGACTCATTCTCGACGCATCACTGGTGGTACGTGCAT
GGAAGCGCTTGGTGATGTGGACATTCGGGCGGTTGATGTCGAGCCAGTTC
AACTTCAATGCTCATCAAACGTCGTTGTGCCGGGAGATATGGTCGGTGAC
TCAATGACGGTGGGCACTGTTTTAGACTCCGGATCGGGTACTACTTGTCC
GTCGGAACAGTTGACGCAGCAGATGGAACAACATTTCCGAGACGAACCAC
AAGTTCATCCATGTGTGAAGGAGATGTCTGTTCCGCTGGCGAATAGACAG
AAGGTTGTGGTGAGGAATCAACCAGCAAAAATTTCGAAAGTACAAGCCGG
CGCTCGCGAGGAGTCTACGAGACTGTCGATTGGCCGGCAGCAACGAGAGA
CGGCTTCGACTGAGCAAAGCAAGCAGTTCGACCCAGGAGGGTGA
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