mRNA_F-serratus_M_contig1119.1105.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1119.1105.1
Unique NamemRNA_F-serratus_M_contig1119.1105.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1119.1105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1119contigF-serratus_M_contig1119:187621..189889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size258
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1119.1105.1prot_F-serratus_M_contig1119.1105.1Fucus serratus malepolypeptideF-serratus_M_contig1119 187623..189889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.9170468-CDS-F-serratus_M_contig1119:187622..1876881622929014.9170468-CDS-F-serratus_M_contig1119:187622..187688Fucus serratus maleCDSF-serratus_M_contig1119 187623..187688 -
1690962666.525811-CDS-F-serratus_M_contig1119:187622..1876881690962666.525811-CDS-F-serratus_M_contig1119:187622..187688Fucus serratus maleCDSF-serratus_M_contig1119 187623..187688 -
1622929014.931274-CDS-F-serratus_M_contig1119:188936..1891021622929014.931274-CDS-F-serratus_M_contig1119:188936..189102Fucus serratus maleCDSF-serratus_M_contig1119 188937..189102 -
1690962666.5338173-CDS-F-serratus_M_contig1119:188936..1891021690962666.5338173-CDS-F-serratus_M_contig1119:188936..189102Fucus serratus maleCDSF-serratus_M_contig1119 188937..189102 -
1622929014.9437463-CDS-F-serratus_M_contig1119:189866..1898891622929014.9437463-CDS-F-serratus_M_contig1119:189866..189889Fucus serratus maleCDSF-serratus_M_contig1119 189867..189889 -
1690962666.5416846-CDS-F-serratus_M_contig1119:189866..1898891690962666.5416846-CDS-F-serratus_M_contig1119:189866..189889Fucus serratus maleCDSF-serratus_M_contig1119 189867..189889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1119.1105.1

>prot_F-serratus_M_contig1119.1105.1 ID=prot_F-serratus_M_contig1119.1105.1|Name=mRNA_F-serratus_M_contig1119.1105.1|organism=Fucus serratus male|type=polypeptide|length=85bp
DQFGNPCWRNKLTLKLHYFDTPPGQPPALPSPAFAGHPRDLHLPIGRPFE
HAPRPPAEGFPPRIQKHHVTRTEVVRGEIAAFDDS
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mRNA from alignment at F-serratus_M_contig1119:187621..189889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1119.1105.1 ID=mRNA_F-serratus_M_contig1119.1105.1|Name=mRNA_F-serratus_M_contig1119.1105.1|organism=Fucus serratus male|type=mRNA|length=2269bp|location=Sequence derived from alignment at F-serratus_M_contig1119:187621..189889- (Fucus serratus male)
GACCAGTTCGGTAACCCCTGCTGGTATGTATTTATAGGGGGGAGATTGGT
AGTATTATAGGCAGTAGTATACAAGGTTTAGTCATAGAATCTTCGGCATA
AAGTCCTCGCGACATCTTATTGTGTGCCTCGTCAGGCCTGAGGGAGGGAT
GAACAAGGAAAGGGGGGCGTTCATGGTGGAACGTGGCGGGCGTGGCGCGT
ATGGTTAATGCCGCGTGTGTCTTCGAAGTCCCGCCGCGTCGGAAATAGGA
AACGCTACACCAGCAAGAGCCACACCATGGGCACGGGGCCTGAAAACCGT
TTGCTTGTTTGAGTTTTAAATAATGCCTTCACCGTGGAACAAACAAACAG
GCTGGTGGTGATTGTAGTTACTGTATTTTCCTTTTTGTTAGTTGCGAACC
AGGACCGTATCCGCGAACGTTAACGGAGAGAGAGGTCGACTGTCTCTCGT
ACGTATGGGAGAAAACTCTGGACATTCACATATTTCCTGGGAAACCCGAT
ATCCGGACAGGGCCTATACGTACATTGCTTTTATTGTCGATCTCCTGTTT
CCCCTTGACTCAGGTGGTTCATCCAAGGGATAAGAAGTGTTTGTGGACGT
GAAAATACTGGAGAGCACTTATGCGCTTGCTATCAACAAAACGGACAACT
CGGTGTCTTCACATCGCCCATAAGTGACAATTGCGATGAATGCCTTCAAA
CGTTGTCTCTTTTTTACCACGGGTACTTCCCGTCTTTTTCTTTTTGGGGC
GTTTTCCTGCTTCCCTATGTGCGTTAACTATAAGCAGGCGGAACAAGTTG
ACGCTAAAACTTCACTACTTCGACACCCCACCGGGACAGCCACCGGCACT
TCCTTCGCCGGCCTTCGCAGGCCACCCACGTGACCTCCACCTCCCGATAG
GTCGTCCCTTCGAACATGCTCCCCGACCGCCAGCCGAAGGGTTCCCCCCA
CGGGTAAGTATTTCGTTATCTTCCCCGTTACTGGTGGTCTGGTGCCGTGG
ACTCTCAATCCCGTTTTTCGTTTGGATACTTGAATAAATAAAAAAGAAGT
TTCGTACGGACGTGGTTTGATATTGCCCCCGTCGTGGACGGCGTCACCAC
AGGAGGAAGGTTACACAGGATTTCTCATCCACCTTGCTTCTGCGGTGCAT
GCCTTAGTTTCCGTTGCGAGAAGGATTCAGCCGTTCCTTTCCCTCGTCGA
TCGTGAAGTCGAATTTCATGTACTAACGATTCAATCGTTCTCCACTTGTT
GGGCATTTCTATTCTTCATTATATTTCTTTTAGTGAGGAAAAATCCCAGT
TACTGAGATTCGAAACTCAGGTCCCAACGTGTACGAAGGTTTCGAGGCTA
CCAACTGAGCTACCGGGGCGACCGGCATTGCACTACCAAGTCAGTAGTAT
CAAAAGTTTATATTCAGTTTCAAGAAAAACCTTAACGCATCTAAACCTTC
TATGAATGTCAAACTTTGATATCAATATAATAGAGCATCGACCCATTCAG
GTGGGGGGGGGATGTCAAAACATTTACGTGAGAACATTGATTGACTATGA
GGAAAACGCTCTTCCATGGCATTTCATTGCTGGGTTCCCCCATAAATGGT
GGTATAGGTATCATAGGGTCAACGGTATAATATCGGGGAGAAGCCTACCG
TTAATAAAACTGCACACCAAAACAGAGGCAAAAGCGCATCAAACCTGGAT
ACATAGTAGTGGCAGTAAGACCTCAGTTGTATGATGTCAGGTTTTGGATC
GGGTTGAAGTTATTGTTGATGTTGCTGTTGATTCACACATTCGGCGTATT
TATTGTCCTTGTAACTAAAGAAGCTACGATGAAACAACAAGTCAGCCAGA
GAACGATCAAATACCAATCCCGCTCGTGGTCACAAAGAGATACGAAGGCC
AACGGGTCACATCCATAGTGACCATCCGCTACTCAAACCAAACAGGGATC
GCAACCACGACGACATTGCCAGGTCCAACTAATCGAGAACATCGGAAACT
CTTATCTGCGCCAAGATATGTCTTTGGCTACGAACTGCAGTTTCTATTAT
CTGGAGTGCTGCAAGTATTTCAGAATCTGGATTACCTGCATAATAGAAAG
ACTGTCTAATGTGCAGCCCATCCAACAAATCAAAGTAAACGAAGTCATGA
AAAGAAATATAGCTCATGTTCTTTCCTTGCCCATCGCTGCTGCTGCTTCA
GATTCAAAAGCACCACGTGACGAGAACCGAAGTTGTGAGAGGCGAAATAG
CGGCTTTTGATGATTCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1119:187621..189889-

>mRNA_F-serratus_M_contig1119.1105.1 ID=mRNA_F-serratus_M_contig1119.1105.1|Name=mRNA_F-serratus_M_contig1119.1105.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig1119:187621..189889- (Fucus serratus male)
GACCAGTTCGGTAACCCCTGCTGGACCAGTTCGGTAACCCCTGCTGGCGG
AACAAGTTGACGCTAAAACTTCACTACTTCGACACCCCACCGGGACAGCC
ACCGGCACTTCCTTCGCCGGCCTTCGCAGGCCACCCACGTGACCTCCACC
TCCCGATAGGTCGTCCCTTCGAACATGCTCCCCGACCGCCAGCCGAAGGG
TTCCCCCCACGGGCGGAACAAGTTGACGCTAAAACTTCACTACTTCGACA
CCCCACCGGGACAGCCACCGGCACTTCCTTCGCCGGCCTTCGCAGGCCAC
CCACGTGACCTCCACCTCCCGATAGGTCGTCCCTTCGAACATGCTCCCCG
ACCGCCAGCCGAAGGGTTCCCCCCACGGATTCAAAAGCACCACGTGACGA
GAACCGAAGTTGTGAGAGGCGAAATAGCGGCTTTTGATGATTCCATTCAA
AAGCACCACGTGACGAGAACCGAAGTTGTGAGAGGCGAAATAGCGGCTTT
TGATGATTCC
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