mRNA_F-serratus_M_contig1119.1104.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1119.1104.1
Unique NamemRNA_F-serratus_M_contig1119.1104.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1119.1104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1119contigF-serratus_M_contig1119:185514..186083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.987828-UTR-F-serratus_M_contig1119:185513..1857021622929014.987828-UTR-F-serratus_M_contig1119:185513..185702Fucus serratus maleUTRF-serratus_M_contig1119 185514..185702 +
1690962666.550563-UTR-F-serratus_M_contig1119:185513..1857021690962666.550563-UTR-F-serratus_M_contig1119:185513..185702Fucus serratus maleUTRF-serratus_M_contig1119 185514..185702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929015.0018253-CDS-F-serratus_M_contig1119:185702..1860831622929015.0018253-CDS-F-serratus_M_contig1119:185702..186083Fucus serratus maleCDSF-serratus_M_contig1119 185703..186083 +
1690962666.5604424-CDS-F-serratus_M_contig1119:185702..1860831690962666.5604424-CDS-F-serratus_M_contig1119:185702..186083Fucus serratus maleCDSF-serratus_M_contig1119 185703..186083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1119.1104.1prot_F-serratus_M_contig1119.1104.1Fucus serratus malepolypeptideF-serratus_M_contig1119 185703..186083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1119.1104.1

>prot_F-serratus_M_contig1119.1104.1 ID=prot_F-serratus_M_contig1119.1104.1|Name=mRNA_F-serratus_M_contig1119.1104.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MHETFCRHHCKKRQFDPPYQSLLNSNGYCSKTSCPVLVLHTPDFVSNHPK
KTRDRTKGARRARQPISIPLATTTVDEGEISNTASSVVTLQIGKHSSEIT
QSRRFCSNRSLKHDKTETLSHLSHRT*
back to top

mRNA from alignment at F-serratus_M_contig1119:185514..186083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1119.1104.1 ID=mRNA_F-serratus_M_contig1119.1104.1|Name=mRNA_F-serratus_M_contig1119.1104.1|organism=Fucus serratus male|type=mRNA|length=570bp|location=Sequence derived from alignment at F-serratus_M_contig1119:185514..186083+ (Fucus serratus male)
CGTGTGGTTATGAACAGAAACGTTTTCCCGCCTTTCGCACCGCGCGGAAT
AGCCGGATCACCACCACATCATTGCGCACAAATGTTTTGTACAATGAGCA
TAACAACAACCTTCCGTGATCTCGAATATGTAGTGTACAACTTTCCGGCA
AAGACGAGAGCAGCTGTACAACAAGCAAAATGAAACACAATGCACGAAAC
ATTTTGCCGGCATCACTGCAAGAAGAGGCAATTTGACCCACCGTATCAAT
CATTGCTAAATTCAAATGGGTACTGCTCAAAAACCTCCTGCCCCGTCCTT
GTTCTCCATACTCCTGATTTTGTTTCAAACCATCCCAAGAAGACTAGAGA
TCGGACGAAGGGTGCGCGCAGGGCAAGGCAACCTATTAGTATTCCACTTG
CTACAACAACAGTAGATGAGGGCGAGATTAGCAACACAGCATCCAGTGTA
GTAACGTTACAGATCGGCAAGCACTCGTCAGAAATTACACAAAGTAGGCG
GTTCTGTTCAAACCGAAGCCTCAAGCATGATAAAACAGAAACGCTTTCCC
ATCTTTCGCACCGCACGTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1119:185514..186083+

>mRNA_F-serratus_M_contig1119.1104.1 ID=mRNA_F-serratus_M_contig1119.1104.1|Name=mRNA_F-serratus_M_contig1119.1104.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig1119:185514..186083+ (Fucus serratus male)
ATGCACGAAACATTTTGCCGGCATCACTGCAAGAAGAGGCAATTTGACCC
ACCGTATCAATCATTGCTAAATTCAAATGGGTACTGCTCAAAAACCTCCT
GCCCCGTCCTTGTTCTCCATACTCCTGATTTTGTTTCAAACCATCCCAAG
AAGACTAGAGATCGGACGAAGGGTGCGCGCAGGGCAAGGCAACCTATTAG
TATTCCACTTGCTACAACAACAGTAGATGAGGGCGAGATTAGCAACACAG
CATCCAGTGTAGTAACGTTACAGATCGGCAAGCACTCGTCAGAAATTACA
CAAAGTAGGCGGTTCTGTTCAAACCGAAGCCTCAAGCATGATAAAACAGA
AACGCTTTCCCATCTTTCGCACCGCACGTAAATGCACGAAACATTTTGCC
GGCATCACTGCAAGAAGAGGCAATTTGACCCACCGTATCAATCATTGCTA
AATTCAAATGGGTACTGCTCAAAAACCTCCTGCCCCGTCCTTGTTCTCCA
TACTCCTGATTTTGTTTCAAACCATCCCAAGAAGACTAGAGATCGGACGA
AGGGTGCGCGCAGGGCAAGGCAACCTATTAGTATTCCACTTGCTACAACA
ACAGTAGATGAGGGCGAGATTAGCAACACAGCATCCAGTGTAGTAACGTT
ACAGATCGGCAAGCACTCGTCAGAAATTACACAAAGTAGGCGGTTCTGTT
CAAACCGAAGCCTCAAGCATGATAAAACAGAAACGCTTTCCCATCTTTCG
CACCGCACGTAA
back to top