mRNA_F-serratus_M_contig1109.1027.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1109.1027.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE) HSP 1 Score: 521 bits (1343), Expect = 5.340e-150 Identity = 697/1995 (34.94%), Postives = 862/1995 (43.21%), Query Frame = 1
Query: 1 ISLDLSTAKTLQQALQQA-LRSRGGRGRSSEE-----DGGGYYRGAMAEPRREEPRRKILPAFGAIFSLGAGGG--------------EGGRAGDGRRPTRSPSMGGDERGDHRAALLGRLRRLVREVTALRLRRGPGLLASASTSPLSVSQPSIDLQTFPALQELWLEEIPLECVEGGLFTLRLQLKSLSFGNALLENLTALLAPH--ATPEHEWGGGSRGTVGR------GVGWTGRSDVSG------GS--------VGDGGHWRAD--RG---EXRASTG--------GASRRIEP-PGVSDDDGDSGGLRRAPTSADTRPDGDDLAGLRLRLGTGTPKLRWALLEVLSVRWCGLRELDPSLRLLPRVRRLSLAHNRIHSMDFFQDCAALEELDLSFNRIKSVENAHWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLEEVSRLSTLPLLRRVAFAGNPLEAEERKRYRVTVLSLLYQGKGGELERELGLSVARSGFGLSSSLAGVGGGVPTTVTLGGAGGIALDGQLSSRKELSELVRLRFTHAVRVRVMFIIDPLIPLERTNASSIKGLGWQGRIAQPYAILIIHARTNIAKSMLRPQPLLDD--LGASTKKSSKCSSEPRQ-----SGSRLCISPHPAGTPFPAPGTP---EGSSRRRPRAETEARG----GLAAQHPGPDTTTTPSAAKR-----------------------RKGTR------------------------AAAIDGPRSNAERAGEAEAGGGG--------------EPRHPFSFCTVPLPAEGVVDTEEDVESCRAADVQHDLEGNPIPETGSPEKHLESRRRWSARGQMQGQGGYCSGPRGVGPSSVLPLGELSTGDAGSDSDEDPPLGRSHLPSPLQLGRSFGD-----SDETRRPTPAAAAVSMVAGARNHPTLGAFGDESLLPPLPPLPQLLPPVLAGEVGPEGEREEKDRADELASRLRAAASVSVRGGLSVED--DAGSLSSPLAPPXXXXXQEAGSSSLEDPRRIP---------REDSSLALAEFFSAPSSXXXXXXXXXXXXXXXGDDENVEAFSNLRDEGVEA-----GEG--------------------------SLQGSTVSARTREGLDNEGAMVVDDVEGEAVDGIEGVDIGVGAS---------------DDLADGSDGYRGDAAYASLLIAEHLELYLRQQVFGGNVAYVSYNDVRL--QSP-----VMHAHREQSKTSPGDRVVAVFRETVLPCLPEGVT------------------------------------SSAVGGEV-------APG-SAAEVDFA--------WERRSAEDLVAAGVARVVRLRGLAGEARGSTMGEVACVVVATERLLFVMDGAFAKKDALFSEAPRPSVLLVLPLGCLEKTTIGFRLQKLELHLNASCMVNPRGDVRTVRRITSQGSMVAAARAATTGGASFWGGISSPLRSSSLDWGGLLDDGGEPEERVSIALLTRDRSRTVNLVQTLEPLATKARHLLGLPPTVVNNRDDDTLEAIAKALP------------RSFVNRAIPRPSAAVSAPTSPVGPAKAA----------------GIFARLGVASGGDDRDSKPMEGTRARTASVGLE----IAAVADDHDEGGPGGGGGRTKGGRSVDAASRAAQLPSDSGEGETSAQASLGRKPPPSMETGDLPPPSPTVAVPAAATAGSRSSSVGGGEDVPVSFGEGGDAGGGCGDGAAVVVFQLLMQRWELRPWVVAPRTLVASKEQLALMDEDHSRMQALLPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGRPPAAIASGYPAARRSPFVGDGNLPEPSNGSGSGDPPIDGGFAGAPEMVCLEAVDLADVLGVHQESSAPEQVMIELKGERAFDPRRQWRLQCRTRGSAEMIASTVLRLSRDRVRHRRQRS-WWK 5130
+ LD+ + LQ+ALQ+ +RG +G S + +GG G P+R+ R L G GAG G + G DGR+ + G H AAL+ +L RL R+ TALR+ RG AS P ++LQ FPALQEL LE +PLE VEG LF LRLQLKSL+F NALL +L ALL P A+ + GG RG V GV R+D G GS DG +R RG + RA G G SR +P PG SGG+++ + RP + L+ LG GTP L W+LLE LSV CGLRELD SLRLLPRVRRLSLA+NR +DFFQDC +LE LDLS NR+ SVEN H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+E +RLSTLP+LRRV GNP+EAEE K YRV+VLSLLYQG+GGEL+ G S+ LAG G T GIALDG+L SRKEL +L +L F A V D +P + +S GL R P +++ R RP +G+S S RL +SP + P P+P RRR A + G G+ Q P R G R A+ GP A G E G +PR S P V + + + +AA D GN E+ R +ARG GG EL+ GD G + LP + G FG+ D R AAAAVS P G G GE E + D S +A GG S + +AG S + P A L RR RE ++ + FF +PS XXXXXX +R GVE G+G S G+ R +E + EG V + E E +GIE ++G G D+ A GYRGD AYA LL+AEHLELY RQQVF G Y+ Y++ R Q P MH HRE SKT ++VA+FRET LPC+P + S V G V A G S + D + E L A G+ + V RG+ GEA G TMGEVACVVVATE +F +DG FAK FS APRP VL+VLPL CLE+TTIGFRLQKLE+H + S + G+ G DD G+ +E VS+ALLTRD+SRT NL+QTLEPL+TKAR ++ LP VV NRD+ TLEAIA+ALP RS +++A P P+ + + T+P G ++AA G+F RLG GDD R + V L AV D G + GR D + +GEG SA + G S ++ PP A P + S S+ V + P S G G + VVVFQLL+QRWELRPWVV PRTLVA+KE+LALMDEDHSR+ + S GR R S V DG DGG + EM C+++VDL DV+ V QE SAPEQV+++LKGERAF+PRRQWRLQCRTRGSAE +AS VLRLSR+RV+ RRQ S WWK
Sbjct: 143 VQLDIPAVQALQRALQRGGFLTRGSQGLSVDSPYAFSEGGAGVGGRR--PQRQSSGRSSLSVEGGT---GAGXGYYSYAPGXXVMAYFDDGVDDDGRQRRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHRGTYRRASNWGQP-------VELQMFPALQELRLEAVPLEHVEG-LFALRLQLKSLTFENALLPSLHALLTPPKPASGSQDTAGGERGHVAADTAADGGVHGPSRADPGGDVNKRDGSDSAPVGVRTADGDRYRLSCKRGKIQQVRALGGVASSRKALGVSRPAKPLPG-------SGGVQQGESE---RP---GMGRLQSGLGMGTPMLHWSLLESLSVCKCGLRELDSSLRLLPRVRRLSLANNRFSRVDFFQDCGSLEVLDLSHNRLNSVENIHAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGRGGELKGVAGR--------FSTMLAGGSGDGSRRET-----GIALDGRLPSRKELVQLSQLCFPRAAEVPFPTATDSALPSSDEHGASRDGL--PSRRHAPGSVVAARGRAE-GTGKRRPSATAAQSAVGSSAXXXXXXXXXXXXXXXXXSRKRLSVSPPASRLPPPSPCVTLRLPAVQRRRHPARRHSSGVPAVGIRGQDPEDQQARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRWGQRDGEPRHGVVXXXXXXXXXXXXXXXVGALAGPGHAAVAIGRGETDGRLSCGWLAFGQQQPLLQPRETASTGVDPEVVPEAVCNDRNTTAAQAAVEGGDSSGN--------ERRSADMGRLAARGAESEAGGAA---------------ELARGDGGVVTAAPXXXXXXALP---ERGEGFGELHLAVEDGGRGELAAAAAVSPSG---------------------------PDDFDGPRG--GENESRQGGDASPS----SAQGGTEGGQSAKSSGNAGVFSVGVNP--------ASGWDLSPGRRGRPRSGGGGGGREVATCRASPFFPSPSPLXXXXXXPSRLLAA------ARQEGGIRPPGVEGDVNGGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXSGTGAADPVR-QEKIHMEGGEVGGEAEVE--EGIE-EEVGCGGVNGEVERDNRGSSSVVDEDAGHDGGYRGDEAYAELLVAEHLELYFRQQVFSGAAPYLLYDEERDGGQQPKDLPRAMHRHREASKTRQEKKLVAMFRETALPCVPLSLRNQRHXXXXXXXXXFRVTTKEKRAARSWLRASWTPSPSPTVAGGVXXXXXXXAEGLSGTKTDESSGSYHGSGLESSMENALAATGMVQQVHRRGVDGEAEGYTMGEVACVVVATESSIFFIDGGFAKDGTQFSAAPRPRVLMVLPLACLERTTIGFRLQKLEMHFDPSSV----GEEEE----------------------------------------GWSDD-GQRDETVSVALLTRDKSRTFNLLQTLEPLSTKARRMMSLPAVVVENRDEATLEAIARALPPSTIAPARHSTSRSQIDQASP-PAFSPAGETAPAGESEAAQRSTKIEPHLPGHESAGLFGRLG--KWGDDSGPAATGDEDGRGSGVALGSVHGCGAVTD----------AGNGQEGREGDDDNGVGAW---AGEGAASAAETHGTA---SWDSVGAPPSLSGTATPLLSPTVSSSNVV----ETPPSVGGGHEG--------TVVVFQLLVQRWELRPWVVVPRTLVATKEKLALMDEDHSRVSSSSSSGKNSNSVFGGLAGEICED------------------------------GR------------RLSWTVADGG---------------DGGGSELKEMSCVDSVDLGDVIDVRQEKSAPEQVVVDLKGERAFNPRRQWRLQCRTRGSAEGVASAVLRLSRERVQQRRQSSSWWK 1885
BLAST of mRNA_F-serratus_M_contig1109.1027.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI) HSP 1 Score: 511 bits (1317), Expect = 1.170e-146 Identity = 646/1886 (34.25%), Postives = 808/1886 (42.84%), Query Frame = 1
Query: 1 ISLDLSTAKTLQQALQQA-LRSRGGRGRSSEE-----DGGGYYRGAMAEPRREEPRRKILP------AFGAIFSLGAGGG-----EGGRAGDGRRPTRSPSMGGDERGDHRAALLGRLRRLVREVTALRLRRGPGLLASASTSPLSVSQPSIDLQTFPALQELWLEEIPLECVEGGLFTLRLQLKSLSFGNALLENLTALLAP-------HATPEHEWGGGSRGTVGRGVGWTGRSDV-SGGSVG--DG------GHWRADRGEXRASTGGASRRIEPPGVSDDDGDSGGLRRAPTSADTRP--DGDDLAGLRLRLGTGTPKLRWALLEVLSVRWCGLRELDPSLRLLPRVRRLSLAHNRIHSMDFFQDCAALEELDLSFNRIKSVENAHWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLEEVSRLSTLPLLRRVAFAGNPLEAEERKRYRVTVLSLLYQGKGGELERELGLSVARSGFGLSSSLAGVGGGVPTTVTLGGAGGIALDGQLSSRKELSELVRLRFTHAVRVRVMFIIDPLIPLERTNASSIKGLGWQGRIAQPYAILIIHARTN-IAKSMLRPQPLLDDLGASTKKSSKCSSEPRQ-----SGSRLCISPHPAGTPFPAPGTP---EGSSRRRPRAETEARGGLAAQHPGPDTTTTPSAAKRRKGTRAAAIDGPRSNAERAGEAEAGGG-------GEPRHPFSFCTVPLPAEGVVDTEEDVESCRAADVQHDLEGNPIPETGSPEKHLESRRRWSARGQMQGQGGYCSGPRGVGPSSVLPLGELST-------GDAGSDSDEDPPLGRSHLPSPLQLGRSFGDSDETRR-----PTPAAAAVSMVA-------GARNHPTLGAFGDESLLPPLPPLPQLLPPVLAGEVGPEGEREEKDRADELASRLRAAASVSVRGGLSVED--DAGSLS-----SP---LAPPXXXXXQEAGSSSLEDPRRIPREDSSLALAEFFSAPSSXXXXXXXXXXXXXXXGDDENVEAFSNLRDEGV-EAGEGSLQGSTVSARTREGLDNEGAMVVDDVEGEAVDGIEGVDIGVGASDDLADGSDGYRGDAAYASLLIAEHLELYLRQQVFGGNVAYVSYNDVRL---QSP-----VMHAHREQSKTSPGDRVVAVFRETVLPCLPEGVTS-----------------------------------------SAVGGEVAPG-SAAEVDFA--------WERRSAEDLVAAGVARVVRLRGLAGEARGSTMGEVACVVVATERLLFVMDGAFAKKDALFSEAPRPSVLLVLPLGCLEKTTIGFRLQKLELHLNASCMVNPRGDVRTVRRITSQGSMVAAARAATTGGASFWGGISSPLRSSSLDWGGLLDDGGEPEE-RVSIALLTRDRSRTVNLVQTLEPLATKARHLLGLPPTVVNNRDDDTLEAIAKALP------------RSFVNRAIPRPSAAVSAPTSPVGPAKAA----------------GIFARLGVASGGDDRDSKPMEGTRARTASVGLEIA----AVADDHDEGGPGGGGGRTKGGRSVDAASRAAQLPSDSGEGETSAQASLGRKPPPSMETGDLPPPSPTVAVPAAATAGSRSSSVGGGEDVPVSF--GEGGDAG-GGCGDGAAVVVFQLLMQRWELRPWVVAPRTLVASKEQLALMDEDHSRMQALLPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGRPPAAIASGYPAARRSPFVGDGNLPEPSNGSGSGDPPIDGGFAGAPEMVCLEAVDLADVLGVHQESSAPEQVMIELKGERAFDPRRQWRLQCRTRGSAEMIASTVLRLSRDRVRHRRQRS-WWK 5130
+ LD+ + LQ+ALQ+ +RG +G S + +GG G P+R+ R L A G +S GGG + G GDGR+ + G H AAL+ +L RL R+ TALR+ RG AS P ++LQ FPALQEL LE +PLE VEG LF LRLQLKSLSF NA L +L ALL P TP + G + T G G G S SGG V DG G AD R S +R + V G + + S +P + + L+ LG GTP L W+LLE LS+ CGLRELDPSLRLLPRVRRLS+AHNR+ +DFFQDC +LE LDLS NR+ SVEN H XXXXXXXXXXXXXXXXXXXXXXXX L+E +RLSTLP+LRRV GNP+EAEE K YRV+VLSLLYQG GGEL+ G +S+ AG G T GIALDG+L SRKEL +L +L F A V D +P + SS GL R P +++ R K L + +G+S + S RL +SP + P P+P P + RRR A G AA PG D + GTR+A I E A A AGG G R S T + + E S A + L P+P G ++ L R ++ P V P +V + +T GD+ + +GR L G ++G ++ R P AAAA ++ A HPT G L P G+ G GE + + D +A+ GG SVE +AG S +P L+P + G + R P S L +P G D +V + + G EA + ++G G NE V GE G G D+ A+ GYRGD AYA LL+AEHLELY RQQVF G Y+ Y++ R Q P MH HRE SKT ++VA+FRET LPC+P + + S GG VA G S + D + E L A G+ + V RG+ GEA G TMGEVACVVVATE +F +DG FAK FS APRP VL+VLPL CLE+TTIGFRLQKLE+H + S + G+ G DDG E VS+ALLTRD+SRT NL+QTLEPL+TKAR + LP VV NRD+ TLEAIA+ALP RS + +A P P+ + + T+P G +KAA G+F RLG G+D R V L AV DD + G GGR G S + A A +D+ E +A L PP S+ P PSPTV R +V + P S G D G GG G VVVFQLL+QRWELRPWVV PRTLVA+KE+ V+++LKGERAFDPRRQWRLQCRTRGSAE +AS VLRLSR+RV+ +RQ S WWK
Sbjct: 245 VQLDIPAVQALQRALQRGGFLTRGSQGLSVDSPYAFSEGGAGVGGRR--PQRQSSGRSSLSVEGGTGAGGGYYSYAPGGGVMAYFDDGVDGDGRQRRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHRGTSRRASNWGQP-------VELQMFPALQELRLEAVPLEHVEG-LFALRLQLKSLSFENAFLPSLLALLTPPEPASGSQDTPGGQGGHAALDTAADG-GVPGPSIADSGGDVNKRDGSDSTPVGARTADSDRYRLSC----KRGKIQQVRSLGGVASSRKALGVSRPAKPLAEWPGMGRLQSGLGMGTPMLHWSLLESLSICKCGLRELDPSLRLLPRVRRLSMAHNRLSRVDFFQDCGSLEVLDLSHNRLTSVENIHAVLGNLRSLKLRGXXXXXXXXXXXXXXXXXXXXXXXXIEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGWGGELKGAAGR--------VSTMFAGGSGDGSGRET-----GIALDGRLPSRKELVQLSQLCFPRAAEVPFPTATDSALPSSDEHGSSRDGL--PSRRHAPGSVVAARGRAEGTGKRRLSATAVQPAVGSSAASAXXXXXXXXXXXXXXSRRRLSVSPPASRLPPPSPCVPLRLPAAQRRRRPARRSNNGVPAAGMPGQDPLDQQARXXXXXGTRSAMI-------EEAAPARAGGXXXXXXXEGNNRM-VSLGTASWSSAAAAEAAELSSSLSALSLG--LSAVPLPSEGGQQQPLLQPRETAST---------AVDPEVV-PEAVCDDRDTTTATAAVEGGDSSGNERRSADMGR--LAPRGAAGEAWGAAELARGDGGVVPAAAAAAAAVEALPERGEGSGELHPTAEDGGRGDLAVAAXXXSPSSPDDFGGQRG--GENDSRQGGDASPK----SANGGTEGGQSVESSGNAGVFSVGVNPAPGWDLSPGRRGRPRSGGGREVAAGRASPFFPSPSPLXXXSRSPLRLLAAARQEEGGIRPPGVDGDVSGGGDGGERGSSEAEKNGMEGGGXXXXAEVGEGNEEEAGCGGVNGEEERGTRGSSS---VEDEDAEHDCGYRGDEAYAELLVAEHLELYFRQQVFSGAAPYLLYDEERDGGGQQPEDLPRAMHRHREASKTRQEKKLVAMFRETALPCVPLSLRNQRHXXXXXXXFRVTTKEKRAARSWLRASWAPSPSPTVAGGVSGSGGGVAEGLSGTKTDESSNSYHGSGLESSMENALAATGMVQQVHRRGVDGEAEGYTMGEVACVVVATESSIFFVDGGFAKDGTQFSAAPRPRVLMVLPLACLERTTIGFRLQKLEMHFDPSAV----GEQEE----------------------------------------GWSDDGHRDETVSVSVALLTRDKSRTFNLLQTLEPLSTKARRRISLPAMVVENRDEATLEAIARALPPSTIASARHSTSRSQLGQASP-PAFSPAGATTPAGESKAAQLSTNIEPDLPGHETAGLFGRLG--KWGEDLGPAAAGDEDCRGGGVALGSVHGGGAVMDDGN-----GQGGREGDGDSSEVAG--AGEGADAAETHDTASWDLVGAPP-SLSGTVTPLPSPTV----------RGRNV---VETPPSVLVRSGVDVGDGGGGHEGTVVVFQLLVQRWELRPWVVVPRTLVATKEK-----------------------------------------------------------------------------------------------------------------------------------------VVVDLKGERAFDPRRQWRLQCRTRGSAEGVASAVLRLSRERVQQQRQSSSWWK 1864
BLAST of mRNA_F-serratus_M_contig1109.1027.1 vs. uniprot
Match: A0A482SU65_9ARCH (Leucine-rich repeat domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU65_9ARCH) HSP 1 Score: 60.8 bits (146), Expect = 9.410e-6 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 847 TGTPKLRWALLEVLSVRWCGLRELDPSLRLLPRVRRLSLAHNRIHSMDFFQDCAALEELDLSFNRIKSVEN 1059
T PK +W+ L VL + CG+ +D SL P + L L+HN I + QDC ALE ++L++NRI+ + N
Sbjct: 218 TVPPKYQWSNLLVLRLTHCGIVRIDESLHFFPNLVSLDLSHNHIMHIAHLQDCIALENINLAYNRIRVLSN 288 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1109.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1109.1027.1 >prot_F-serratus_M_contig1109.1027.1 ID=prot_F-serratus_M_contig1109.1027.1|Name=mRNA_F-serratus_M_contig1109.1027.1|organism=Fucus serratus male|type=polypeptide|length=1672bp MAEPRREEPRRKILPAFGAIFSLGAGGGEGGRAGDGRRPTRSPSMGGDERback to top mRNA from alignment at F-serratus_M_contig1109:278760..295917- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1109.1027.1 ID=mRNA_F-serratus_M_contig1109.1027.1|Name=mRNA_F-serratus_M_contig1109.1027.1|organism=Fucus serratus male|type=mRNA|length=17158bp|location=Sequence derived from alignment at F-serratus_M_contig1109:278760..295917- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1109:278760..295917- >mRNA_F-serratus_M_contig1109.1027.1 ID=mRNA_F-serratus_M_contig1109.1027.1|Name=mRNA_F-serratus_M_contig1109.1027.1|organism=Fucus serratus male|type=CDS|length=10032bp|location=Sequence derived from alignment at F-serratus_M_contig1109:278760..295917- (Fucus serratus male)back to top |