mRNA_F-serratus_M_contig1109.1021.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1109.1021.1
Unique NamemRNA_F-serratus_M_contig1109.1021.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1109.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1109contigF-serratus_M_contig1109:158966..162226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2308
Cds size1668
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.7262554-UTR-F-serratus_M_contig1109:158965..1590941622928987.7262554-UTR-F-serratus_M_contig1109:158965..159094Fucus serratus maleUTRF-serratus_M_contig1109 158966..159094 +
1690962657.8086832-UTR-F-serratus_M_contig1109:158965..1590941690962657.8086832-UTR-F-serratus_M_contig1109:158965..159094Fucus serratus maleUTRF-serratus_M_contig1109 158966..159094 +
1622928987.7906282-UTR-F-serratus_M_contig1109:161569..1617361622928987.7906282-UTR-F-serratus_M_contig1109:161569..161736Fucus serratus maleUTRF-serratus_M_contig1109 161570..161736 +
1690962657.850839-UTR-F-serratus_M_contig1109:161569..1617361690962657.850839-UTR-F-serratus_M_contig1109:161569..161736Fucus serratus maleUTRF-serratus_M_contig1109 161570..161736 +
1622928987.8050926-UTR-F-serratus_M_contig1109:161882..1622261622928987.8050926-UTR-F-serratus_M_contig1109:161882..162226Fucus serratus maleUTRF-serratus_M_contig1109 161883..162226 +
1690962657.8600569-UTR-F-serratus_M_contig1109:161882..1622261690962657.8600569-UTR-F-serratus_M_contig1109:161882..162226Fucus serratus maleUTRF-serratus_M_contig1109 161883..162226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.7378747-CDS-F-serratus_M_contig1109:159094..1598111622928987.7378747-CDS-F-serratus_M_contig1109:159094..159811Fucus serratus maleCDSF-serratus_M_contig1109 159095..159811 +
1690962657.8188345-CDS-F-serratus_M_contig1109:159094..1598111690962657.8188345-CDS-F-serratus_M_contig1109:159094..159811Fucus serratus maleCDSF-serratus_M_contig1109 159095..159811 +
1622928987.749925-CDS-F-serratus_M_contig1109:160089..1601791622928987.749925-CDS-F-serratus_M_contig1109:160089..160179Fucus serratus maleCDSF-serratus_M_contig1109 160090..160179 +
1690962657.8289828-CDS-F-serratus_M_contig1109:160089..1601791690962657.8289828-CDS-F-serratus_M_contig1109:160089..160179Fucus serratus maleCDSF-serratus_M_contig1109 160090..160179 +
1622928987.7640107-CDS-F-serratus_M_contig1109:160499..1608831622928987.7640107-CDS-F-serratus_M_contig1109:160499..160883Fucus serratus maleCDSF-serratus_M_contig1109 160500..160883 +
1690962657.836429-CDS-F-serratus_M_contig1109:160499..1608831690962657.836429-CDS-F-serratus_M_contig1109:160499..160883Fucus serratus maleCDSF-serratus_M_contig1109 160500..160883 +
1622928987.7768896-CDS-F-serratus_M_contig1109:161092..1615691622928987.7768896-CDS-F-serratus_M_contig1109:161092..161569Fucus serratus maleCDSF-serratus_M_contig1109 161093..161569 +
1690962657.8437016-CDS-F-serratus_M_contig1109:161092..1615691690962657.8437016-CDS-F-serratus_M_contig1109:161092..161569Fucus serratus maleCDSF-serratus_M_contig1109 161093..161569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1109.1021.1prot_F-serratus_M_contig1109.1021.1Fucus serratus malepolypeptideF-serratus_M_contig1109 159095..161569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1109.1021.1

>prot_F-serratus_M_contig1109.1021.1 ID=prot_F-serratus_M_contig1109.1021.1|Name=mRNA_F-serratus_M_contig1109.1021.1|organism=Fucus serratus male|type=polypeptide|length=556bp
MNSEDHKHRRGVDASSLFEAHRDNAAPLECQAGPRARLPRTIDITAVCLP
GGGGIVGDNCHTDVRLAWDLMSPLTADKLRGKQLDGSTAADAVNAQALQG
EGVGCWDRHVHRRVCTGREAARDPHKEVERVCQGIEGGGGARCGGEGVGS
ITTSPRDVGAVDVSCDPPVVDEERVVSEAVKYFWRSAKYKRVGRDTAEGC
LDVLDRGKADKIGMSDLPSIGEDSDYAVVRGGPGGYVAEVLRVPGMTSTN
SRISRERKNTSSALTHGCEVSIAGNPAFGLRRRRVSDRPTPTVTGRSPSE
KSTQQKGAVTKSVSSSGPFIQRPATTGRNLRRRDNSCVAEFAFGGRENPS
EVDEATRVEKARVGHGKSAESKIMFQKDYLATPPTGRDATVDRGDDQVRE
SETKSTEEEGSSAAALGLMPFMQRKPCAVAHDYQSDGERRWWSKGAPSSC
GNVSLGSLDSDRSSSCADVCSSDKAGGGFEEVPESSPTTAPTSAGSNRKC
LVGTYHLDLCGVECDGDGTRPRDMKTQIANLFAKSGGGQPTKGRVEEKTQ
LGRRG*
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mRNA from alignment at F-serratus_M_contig1109:158966..162226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1109.1021.1 ID=mRNA_F-serratus_M_contig1109.1021.1|Name=mRNA_F-serratus_M_contig1109.1021.1|organism=Fucus serratus male|type=mRNA|length=3261bp|location=Sequence derived from alignment at F-serratus_M_contig1109:158966..162226+ (Fucus serratus male)
GGGGATGACAGGAGAATCCTCTCCCTTCTGGGACAAGAGCCGCAGGACGT
CATCTCCGCGAAGCCTGCCCGAGCCTCGCCACCAATCGACTTATCTTGTA
GCCGTGACGAAACCTCGCCGCCTCAGAAGATGAACTCGGAGGATCATAAA
CATCGCCGAGGGGTGGATGCGTCTTCCCTTTTTGAAGCTCACCGCGATAA
CGCTGCGCCGTTAGAATGCCAGGCCGGTCCTCGAGCACGACTCCCTAGAA
CGATCGATATCACAGCCGTCTGCTTACCTGGTGGTGGGGGAATTGTTGGC
GATAATTGCCACACCGATGTTAGATTGGCTTGGGATTTGATGTCCCCCCT
TACCGCGGATAAGCTCAGAGGAAAGCAGCTCGACGGCAGCACCGCGGCCG
ACGCCGTCAACGCTCAAGCCCTTCAAGGTGAAGGGGTTGGCTGTTGGGAC
CGCCACGTGCACCGACGTGTGTGCACTGGGCGTGAGGCTGCCCGTGACCC
CCACAAGGAGGTCGAGCGAGTGTGCCAAGGTATAGAAGGAGGAGGAGGCG
CAAGGTGTGGAGGCGAAGGCGTGGGGAGCATCACCACGTCCCCGCGGGAT
GTGGGTGCTGTGGATGTGAGTTGCGACCCACCTGTCGTTGACGAGGAACG
AGTAGTATCTGAGGCGGTTAAATATTTCTGGCGATCAGCGAAATACAAGA
GAGTGGGTAGGGACACCGCCGAGGGCTGTCTTGATGTCCTTGATAGAGGG
AAAGCGGACAAGATCGGCATGAGTGACCTGCCCAGCATTGGCGAGGATAG
TGACTATGCAGTCGTGCGAGGAGGACCGGGAGGTTATGTGGCGGAGGTAA
GAGGATTTCACTTATCAGAACTGTAATGGGAGCCGGAAGCGTACAAAAGT
AGGGAGAGGAGGAGAGGGGTTGCTCAAGGTGATTTCCGAACAGAGTTGAA
CAATCATAAACACGGACCAATATTGTTTTATATCATAGCTGTAGTATTTA
AAGCAGGAGAGAGGCTCTCGCCTTGAATAGGGGATTTTATCGTTGCAGCC
GTCCAACTAAGCTTCGTGTGTTGTCGTCGCACGAAAATTTAGCGTCTCTC
GCGTTCATCCCGCTTCACATTCAGGTGCTACGGGTCCCAGGGATGACTTC
GACCAACTCTCGAATATCCCGGGAAAGAAAAAACACTTCCTCGGCTCTAA
CTCACGGTTGTGAGGTGAGTAATTGATAATCACTTCCCAATGGCATGTTT
TGTCTTTCGTTAGTAGATATAATGTGTTCTAGCTTTTGAGATCGCGCACT
GGACTGACGGAACGTTTGTGAGCTACGGTGACTAACGACAATCGACGTCG
TTGGAGGGTTCAGCCCAACGAGTATATTTTGACTGACACGCGAGTGGCCA
AATCCATGGCATAGAGCAAGTGCCGGATCCTTTGAGGCAACTCAGAGCTG
GAGAATACATCACTGATCGCACCGTGAGGTCTTCTGACGCCACGTATGTC
CACTGGTTCTTGGGCTACCACCGTGGGGATACAGGTATCGATAGCTGGGA
ATCCAGCTTTTGGATTACGCCGGCGCCGCGTTTCTGACAGACCCACGCCC
ACCGTTACTGGCCGAAGCCCATCAGAAAAATCCACACAACAAAAAGGAGC
AGTTACCAAGTCAGTGAGCTCGTCGGGGCCATTCATCCAGCGTCCGGCTA
CCACAGGCAGGAACCTCCGAAGAAGAGATAACTCGTGCGTGGCCGAGTTC
GCTTTCGGTGGACGTGAAAACCCGTCGGAAGTCGACGAAGCCACGCGAGT
CGAGAAAGCTAGGGTAGGCCACGGCAAAAGTGCCGAAAGTAAAATCATGT
TCCAGAAAGATTATCTTGCTACACCTCCGACCGGAAGGGACGCGACCGTC
GATCGTGGGGACGACCAGGTGAACTTTACGCTATCGTGCCCAATATGAAG
TAGCGTCAAAAAGCTCATTATACACCACATTACAAGCTACGGAAAGCTCG
GAAAGGATAACTCTGCTTCGTTGTTGACTCCCCACAGCAGAGCGCTGCTC
CCGCACTCGCAGTGGCGCTACTACATTGTCTTGTTCCTAGCAACGTGTTT
TCTTCCGGCGAAACGTTCCACGTACAGGTAAGGGAATCGGAGACAAAATC
AACCGAGGAGGAAGGAAGCTCGGCCGCGGCCTTGGGGCTCATGCCGTTCA
TGCAGAGAAAGCCTTGCGCGGTAGCCCACGATTACCAAAGTGATGGCGAG
CGGAGATGGTGGAGCAAGGGTGCACCGTCCTCGTGCGGTAATGTATCGCT
GGGGTCGCTGGATTCTGATCGTTCGAGCTCGTGCGCCGATGTGTGCTCCT
CTGACAAAGCCGGAGGAGGTTTTGAGGAGGTGCCAGAGTCCTCGCCCACG
ACGGCCCCAACGAGTGCGGGGTCCAACAGAAAGTGTCTTGTGGGCACCTA
TCACCTTGACCTTTGCGGTGTTGAGTGCGACGGTGATGGCACCCGTCCAA
GAGATATGAAGACACAGATCGCGAATTTGTTTGCCAAAAGCGGGGGAGGT
CAACCCACGAAGGGCCGCGTCGAAGAAAAAACGCAATTGGGACGCCGAGG
TTAACTGGACAGTCCTTCCGACGCAGAGATATTACCATGCCAAAGGCAAC
CACGATTTGCAGTCACGTAAGCGTCGAATCCGACGTCGGCGTAGGAGCGG
AGGAGCCGATGAAGCTCGACTCCGGCACGGGCGCGCTGAAGCCGTGGGAG
AGCGTAAACGACTTTTTTCAGGTGAGGGGGTCCGGAGAGAAAGATAATGA
GCAGAAAATTTTGGGCAAACATTTGGTTGCCCATAAATTACCAGGAGTTT
CCAGGACCAGTTTTCACGACATACGCCCCCTACACACCTGCGCTCCGCCC
GATGGACTTTTGGGCAGATCAAGACTCACAAAGCTATCCAATACTATTTT
GAGGGCATGGATTGAGAACGACTAGGTCGCCTCGTGAATACGGCGTACGG
GGATTGCTGACGTGCGGAATACGATCAAATCCGTTGGAAACCGAATTGCT
CGTAGCAAGAACGTCGTGGGGATTGCTCCAGGAAGGCGCAGCCCTCAAAA
TATGTTTCGCTTGCAGAGGTTTGAATGTCGCGCGCCGGTAAAAACGATAG
GTCTCGCCTTGGAAGTACGCTCGTAGTTGTAGCAGCCCTGTTCTGGGCTA
TAAGCGCGCGGTAGCTTGTAAAAAATCTGATGTCCTGGCACGCGACACAA
ATGGAGTATCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1109:158966..162226+

>mRNA_F-serratus_M_contig1109.1021.1 ID=mRNA_F-serratus_M_contig1109.1021.1|Name=mRNA_F-serratus_M_contig1109.1021.1|organism=Fucus serratus male|type=CDS|length=3336bp|location=Sequence derived from alignment at F-serratus_M_contig1109:158966..162226+ (Fucus serratus male)
ATGAACTCGGAGGATCATAAACATCGCCGAGGGGTGGATGCGTCTTCCCT
TTTTGAAGCTCACCGCGATAACGCTGCGCCGTTAGAATGCCAGGCCGGTC
CTCGAGCACGACTCCCTAGAACGATCGATATCACAGCCGTCTGCTTACCT
GGTGGTGGGGGAATTGTTGGCGATAATTGCCACACCGATGTTAGATTGGC
TTGGGATTTGATGTCCCCCCTTACCGCGGATAAGCTCAGAGGAAAGCAGC
TCGACGGCAGCACCGCGGCCGACGCCGTCAACGCTCAAGCCCTTCAAGGT
GAAGGGGTTGGCTGTTGGGACCGCCACGTGCACCGACGTGTGTGCACTGG
GCGTGAGGCTGCCCGTGACCCCCACAAGGAGGTCGAGCGAGTGTGCCAAG
GTATAGAAGGAGGAGGAGGCGCAAGGTGTGGAGGCGAAGGCGTGGGGAGC
ATCACCACGTCCCCGCGGGATGTGGGTGCTGTGGATGTGAGTTGCGACCC
ACCTGTCGTTGACGAGGAACGAGTAGTATCTGAGGCGGTTAAATATTTCT
GGCGATCAGCGAAATACAAGAGAGTGGGTAGGGACACCGCCGAGGGCTGT
CTTGATGTCCTTGATAGAGGGAAAGCGGACAAGATCGGCATGAGTGACCT
GCCCAGCATTGGCGAGGATAGTGACTATGCAGTCGTGCGAGGAGGACCGG
GAGGTTATGTGGCGGAGATGAACTCGGAGGATCATAAACATCGCCGAGGG
GTGGATGCGTCTTCCCTTTTTGAAGCTCACCGCGATAACGCTGCGCCGTT
AGAATGCCAGGCCGGTCCTCGAGCACGACTCCCTAGAACGATCGATATCA
CAGCCGTCTGCTTACCTGGTGGTGGGGGAATTGTTGGCGATAATTGCCAC
ACCGATGTTAGATTGGCTTGGGATTTGATGTCCCCCCTTACCGCGGATAA
GCTCAGAGGAAAGCAGCTCGACGGCAGCACCGCGGCCGACGCCGTCAACG
CTCAAGCCCTTCAAGGTGAAGGGGTTGGCTGTTGGGACCGCCACGTGCAC
CGACGTGTGTGCACTGGGCGTGAGGCTGCCCGTGACCCCCACAAGGAGGT
CGAGCGAGTGTGCCAAGGTATAGAAGGAGGAGGAGGCGCAAGGTGTGGAG
GCGAAGGCGTGGGGAGCATCACCACGTCCCCGCGGGATGTGGGTGCTGTG
GATGTGAGTTGCGACCCACCTGTCGTTGACGAGGAACGAGTAGTATCTGA
GGCGGTTAAATATTTCTGGCGATCAGCGAAATACAAGAGAGTGGGTAGGG
ACACCGCCGAGGGCTGTCTTGATGTCCTTGATAGAGGGAAAGCGGACAAG
ATCGGCATGAGTGACCTGCCCAGCATTGGCGAGGATAGTGACTATGCAGT
CGTGCGAGGAGGACCGGGAGGTTATGTGGCGGAGGTGCTACGGGTCCCAG
GGATGACTTCGACCAACTCTCGAATATCCCGGGAAAGAAAAAACACTTCC
TCGGCTCTAACTCACGGTTGTGAGGTGCTACGGGTCCCAGGGATGACTTC
GACCAACTCTCGAATATCCCGGGAAAGAAAAAACACTTCCTCGGCTCTAA
CTCACGGTTGTGAGGTATCGATAGCTGGGAATCCAGCTTTTGGATTACGC
CGGCGCCGCGTTTCTGACAGACCCACGCCCACCGTTACTGGCCGAAGCCC
ATCAGAAAAATCCACACAACAAAAAGGAGCAGTTACCAAGTCAGTGAGCT
CGTCGGGGCCATTCATCCAGCGTCCGGCTACCACAGGCAGGAACCTCCGA
AGAAGAGATAACTCGTGCGTGGCCGAGTTCGCTTTCGGTGGACGTGAAAA
CCCGTCGGAAGTCGACGAAGCCACGCGAGTCGAGAAAGCTAGGGTAGGCC
ACGGCAAAAGTGCCGAAAGTAAAATCATGTTCCAGAAAGATTATCTTGCT
ACACCTCCGACCGGAAGGGACGCGACCGTCGATCGTGGGGACGACCAGGT
ATCGATAGCTGGGAATCCAGCTTTTGGATTACGCCGGCGCCGCGTTTCTG
ACAGACCCACGCCCACCGTTACTGGCCGAAGCCCATCAGAAAAATCCACA
CAACAAAAAGGAGCAGTTACCAAGTCAGTGAGCTCGTCGGGGCCATTCAT
CCAGCGTCCGGCTACCACAGGCAGGAACCTCCGAAGAAGAGATAACTCGT
GCGTGGCCGAGTTCGCTTTCGGTGGACGTGAAAACCCGTCGGAAGTCGAC
GAAGCCACGCGAGTCGAGAAAGCTAGGGTAGGCCACGGCAAAAGTGCCGA
AAGTAAAATCATGTTCCAGAAAGATTATCTTGCTACACCTCCGACCGGAA
GGGACGCGACCGTCGATCGTGGGGACGACCAGGTAAGGGAATCGGAGACA
AAATCAACCGAGGAGGAAGGAAGCTCGGCCGCGGCCTTGGGGCTCATGCC
GTTCATGCAGAGAAAGCCTTGCGCGGTAGCCCACGATTACCAAAGTGATG
GCGAGCGGAGATGGTGGAGCAAGGGTGCACCGTCCTCGTGCGGTAATGTA
TCGCTGGGGTCGCTGGATTCTGATCGTTCGAGCTCGTGCGCCGATGTGTG
CTCCTCTGACAAAGCCGGAGGAGGTTTTGAGGAGGTGCCAGAGTCCTCGC
CCACGACGGCCCCAACGAGTGCGGGGTCCAACAGAAAGTGTCTTGTGGGC
ACCTATCACCTTGACCTTTGCGGTGTTGAGTGCGACGGTGATGGCACCCG
TCCAAGAGATATGAAGACACAGATCGCGAATTTGTTTGCCAAAAGCGGGG
GAGGTCAACCCACGAAGGGCCGCGTCGAAGAAAAAACGCAATTGGGACGC
CGAGGTTAAGTAAGGGAATCGGAGACAAAATCAACCGAGGAGGAAGGAAG
CTCGGCCGCGGCCTTGGGGCTCATGCCGTTCATGCAGAGAAAGCCTTGCG
CGGTAGCCCACGATTACCAAAGTGATGGCGAGCGGAGATGGTGGAGCAAG
GGTGCACCGTCCTCGTGCGGTAATGTATCGCTGGGGTCGCTGGATTCTGA
TCGTTCGAGCTCGTGCGCCGATGTGTGCTCCTCTGACAAAGCCGGAGGAG
GTTTTGAGGAGGTGCCAGAGTCCTCGCCCACGACGGCCCCAACGAGTGCG
GGGTCCAACAGAAAGTGTCTTGTGGGCACCTATCACCTTGACCTTTGCGG
TGTTGAGTGCGACGGTGATGGCACCCGTCCAAGAGATATGAAGACACAGA
TCGCGAATTTGTTTGCCAAAAGCGGGGGAGGTCAACCCACGAAGGGCCGC
GTCGAAGAAAAAACGCAATTGGGACGCCGAGGTTAA
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