mRNA_F-serratus_M_contig1109.1020.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: D8LM99_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM99_ECTSI) HSP 1 Score: 179 bits (453), Expect = 1.270e-44 Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 3
Query: 1149 EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV-----RCLSD 1505
++CSEA LRR+ GEEDL VR LA+ VDT TQVDHLGT++P L ELRL+RGS L+SFRDLGSSL LRVLWLSACGV HLDGVGALTGLEELYLAFND++DLTSIALHD LEV CL D
Sbjct: 18 DECSEASLRRITGEEDLRDVRHLALAVDTKTTQVDHLGTVLPLLTELRLERGSVLASFRDLGSSLPNLRVLWLSACGVCHLDGVGALTGLEELYLAFNDVEDLTSIALHDRLEVLDLESNCLKD 141
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A6H5JTQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ1_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.870e-43 Identity = 88/112 (78.57%), Postives = 97/112 (86.61%), Query Frame = 3
Query: 1155 CSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
CSEA LR + GEEDL VR LA+ VDT TQVDHLG ++P L+ELRL+RGS L+SFRDLGSSL LRVLWLSACGVRHLDGVGALTGLEELYLAFND++DLTSIALHD LEV
Sbjct: 20 CSEASLRIITGEEDLRDVRHLALAVDTNTTQVDHLGIVLPLLSELRLERGSVLASFRDLGSSLPNLRVLWLSACGVRHLDGVGALTGLEELYLAFNDVEDLTSIALHDRLEV 131
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A397FBJ1_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FBJ1_9STRA) HSP 1 Score: 119 bits (299), Expect = 3.160e-27 Identity = 75/167 (44.91%), Postives = 106/167 (63.47%), Query Frame = 3
Query: 1011 RFQIDDETTAPDFLMGERTVP----PKPASPKDKKGASVSERSK-NHWDEE--EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
R ++DD T L+ RT+P P P S D+ + + H D+ +D ++ LRR+ G++DL+ V L +TVDT V+ LG L+PSL +LRL + S L SFRDLG+SL L++LWL + GV+ LDG+GALTGL ELYL FNDI D++ ++LHD L +
Sbjct: 10 RQEVDDTATRMHKLV-IRTLPKGCNPMPVSSTDRPPSRSGPMAPPTHEDDNPFDDITDEKLRRLSGKQDLNRVTYLQLTVDTHKQSVEALGELLPSLTQLRLHQ-SVLHSFRDLGTSLHGLQILWLMSSGVKDLDGIGALTGLRELYLQFNDIVDVSPLSLHDELHI 174
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A3R7AY43_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AY43_9STRA) HSP 1 Score: 119 bits (297), Expect = 8.780e-26 Identity = 72/167 (43.11%), Postives = 107/167 (64.07%), Query Frame = 3
Query: 1011 RFQIDDETTAPDFLMGERTVP----PKPASPKDKKGASVSERSKNHWDEE---EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
R ++DD T L+ RT+P P P S D+ + + ++++ +D ++ LR++ G++DL+ V L +TVDT V+ LG L+PSL +LRL + S L SFRDLG+SL L++LWL + GV+ LDG+GALTGL ELYL FNDI D++ ++LHD L +
Sbjct: 10 RQEVDDTVTRMHKLV-IRTLPKGCNPMPVSSTDRPPSRSGPMAPPTYEDDNPFDDITDEKLRQLSGKQDLNRVTYLQLTVDTHKQSVEALGELLPSLTQLRLHQ-SVLHSFRDLGTSLHGLQILWLMSSGVKDLDGIGALTGLRELYLQFNDIVDVSPLSLHDELHI 174
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A3R6ZAB4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZAB4_9STRA) HSP 1 Score: 118 bits (295), Expect = 2.570e-25 Identity = 62/114 (54.39%), Postives = 83/114 (72.81%), Query Frame = 3
Query: 1149 EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
+D ++A LR + G++DLS V L +TVDT V+ LG L+PSL +LRL S L SFRDLG+SL +L+VLWL GV+ LDG+GALTGL ELYL FN+I D++ +++HD L V
Sbjct: 62 DDLTDAKLRLLSGKQDLSRVTYLQLTVDTHKQSVEALGVLLPSLTQLRLHE-SVLHSFRDLGTSLHSLQVLWLMRSGVKDLDGIGALTGLRELYLQFNEISDVSPLSMHDALHV 174
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: W4G0V7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0V7_9STRA) HSP 1 Score: 120 bits (300), Expect = 4.460e-25 Identity = 72/167 (43.11%), Postives = 108/167 (64.67%), Query Frame = 3
Query: 1011 RFQIDDETTAPDFLMGERTVP----PKPASPKDKKGASVSERSKNHWDEE---EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
R ++DD T L+ RT+P P P S D+ + + ++++ +D ++ LR++ G++DL+ V L +TVDT V+ LG L+PSL++LRL + S L SFRDLG+SL L++LWL + GV+ LDG+GALTGL ELYL FNDI D++ ++LHD L +
Sbjct: 10 RQEVDDTATRMHKLV-IRTLPKGCNPMPVSSTDRPPSRSGPMAPPTYEDDNPFDDITDEKLRQISGKQDLNRVTYLQLTVDTHKQSVEALGELLPSLSQLRLHQ-SVLHSFRDLGTSLHGLQILWLMSSGVKDLDGIGALTGLRELYLQFNDIVDVSPLSLHDELHI 174
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A485KIX1_9STRA (Aste57867_7880 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIX1_9STRA) HSP 1 Score: 119 bits (299), Expect = 5.370e-25 Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 3
Query: 1149 EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV-----RCLSDVV 1511
+D +E LR++ G++DL+ V L +TVDT V+ LG L+PS+ +LRL + S L SFRDLG+SL L+VLWL GV+ LDG+GALTGL ELYL FN+I D++ +++HD L V C+ D+V
Sbjct: 59 DDITEEKLRQISGKQDLNKVNYLQLTVDTQKQSVEALGELLPSMTQLRLHQ-SILHSFRDLGTSLHGLQVLWLMRSGVKDLDGIGALTGLRELYLQFNEIADISPLSMHDELHVIDLQGNCVEDIV 183
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A024UDU0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDU0_9STRA) HSP 1 Score: 118 bits (295), Expect = 8.390e-25 Identity = 62/114 (54.39%), Postives = 83/114 (72.81%), Query Frame = 3
Query: 1149 EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
+D ++A LR + G++DLS V L +TVDT V+ LG L+PSL +LRL S L SFRDLG+SL +L+VLWL GV+ LDG+GALTGL ELYL FN+I D++ +++HD L V
Sbjct: 62 DDLTDAKLRLLSGKQDLSRVTYLQLTVDTHKQSVEALGVLLPSLTQLRLHE-SVLHSFRDLGTSLHSLQVLWLMRSGVKDLDGIGALTGLRELYLQFNEISDVSPLSMHDALHV 174
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A6A5AB10_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AB10_9STRA) HSP 1 Score: 108 bits (270), Expect = 7.570e-24 Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 3
Query: 1161 EALLRRVRG----EEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
E L+R +R + DL+ V L +TVDT V+ LG L+PSL +LRL + S L SFRDLG+SL L++LWL + GV+ LDG+GALTGL ELYL FNDI D++ ++LHD L +
Sbjct: 48 EKLVRCLRSLKHDDTDLNRVTYLQLTVDTHKQSVEALGELLPSLTQLRLHQ-SVLHSFRDLGTSLHGLQILWLMSSGVKDLDGIGALTGLRELYLQFNDIMDVSPLSLHDELHI 160
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Match: A0A1V9YPU2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YPU2_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.930e-23 Identity = 64/143 (44.76%), Postives = 94/143 (65.73%), Query Frame = 3
Query: 1065 TVPPKPASPKDKKGASVSERSKNHWDEE-EDCSEALLRRVRGEEDLSAVRALAITVDTTVTQVDHLGTLMPSLAELRLKRGSTLSSFRDLGSSLATLRVLWLSACGVRHLDGVGALTGLEELYLAFNDIDDLTSIALHDHLEV 1490
T P P SP K ++ SK+ D D ++ LR++ G++DL+ V L +T+DT V+ LG L+PSL +L+L + S L SFRDLG+SL +L+VLW+ GV+ LDG+GALTGL ELYL N+I D++ +++HD L +
Sbjct: 642 TCNPVPVSPSKVKAPFYADISKSEEDNPFGDLTQDKLRQISGKQDLAKVTCLEMTIDTVKQSVEALGELLPSLLQLKLHQ-SVLHSFRDLGTSLHSLQVLWVECSGVKDLDGIGALTGLRELYLKGNEIVDISPLSMHDELSI 783 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1109.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1109.1020.1 >prot_F-serratus_M_contig1109.1020.1 ID=prot_F-serratus_M_contig1109.1020.1|Name=mRNA_F-serratus_M_contig1109.1020.1|organism=Fucus serratus male|type=polypeptide|length=174bp MFNPIRFQIDDETTAPDFLMGERTVPPKPASPKDKKGASVSERSKNHWDEback to top mRNA from alignment at F-serratus_M_contig1109:148813..150722+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1109.1020.1 ID=mRNA_F-serratus_M_contig1109.1020.1|Name=mRNA_F-serratus_M_contig1109.1020.1|organism=Fucus serratus male|type=mRNA|length=1910bp|location=Sequence derived from alignment at F-serratus_M_contig1109:148813..150722+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1109:148813..150722+ >mRNA_F-serratus_M_contig1109.1020.1 ID=mRNA_F-serratus_M_contig1109.1020.1|Name=mRNA_F-serratus_M_contig1109.1020.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig1109:148813..150722+ (Fucus serratus male)back to top |