mRNA_F-serratus_M_contig1108.1015.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1108.1015.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI) HSP 1 Score: 344 bits (883), Expect = 3.420e-110 Identity = 232/504 (46.03%), Postives = 312/504 (61.90%), Query Frame = 1
Query: 1 LRIGGRFNSNLFEEFVTSSGTTDNFETYDYDYFTNIISIAGVFTSFGGSISISEDGTSDSFEWTSDAEEAWGRKLTFSLSTY--STLHTVELHADTVGWQSFDVSQYLNADQYVTVISLVMRGTGSGAPGFYLLDARFSGVAEENPTNQFHVVSTFIERWENALYPDFVAERSGDQAAIMEAICAVKKASFDGVDCVGEDTTATGKRMCLLFWLRLFLSSSSATGRACNAQSNRFS----SLSTVPYSRQNQ---WPTFNFLLVCVLSKLPLFLY-RAVYKKREFTSASQFSHYLYWVELSLHMAVPP-NMTTPHTRHNITCEDLEIRFCDGDAMVVRDSKIVNIDAGRFDG-EGVVTINRQPVGPASTTATGASHVDLGSSSSISGIRILGSNNFTFEATF---NVEYNSEGSGYVGSRDGQQPIDVIVESSSLVTFDNMIVKSANDPVMTVSADSSAVVFDSCDFSSVNSGTCIIEMGDPSAVT--AEDDELMLVDNCYIKV 1461
+R+GGRF S + EEFV SSGTTD FETYD+DY + + IA VF+S G ISISE+ T+D FEW+SD+ EA R L SL+ Y + H +H G+QSFD++ + ADQYVT I + M+GTGSGAPGF +LD G +NP++ F+V STFIE W PDFV SGDQ AI AICAVKK +FDGVDC+ D TATG L W+R +++S+ A ++ +NR LS+ RQ WP + L C +LP F+ R + T+ S H L L L +VPP + + P+T N+TCE ++IR+C GDA+VVRDS +V+IDAGR+D EGV +++ +P P + + + L S + ++ R GS + E + N EG+G VGS DGQQPI+VIVESSSLV F + V+S NDPVMT++ DS+ V F + +S+V SGTC I+ DPS VT A++DEL+L CY+KV
Sbjct: 1 MRLGGRFTSWIAEEFVMSSGTTDGFETYDFDYKASSVRIAAVFSSPGEFISISEEPTTDGFEWSSDSNEAISRTLFLSLAGYFMAERHGRGVHDHHAGFQSFDLTGF--ADQYVTSIGIEMKGTGSGAPGFAVLDPMVLGAKIDNPSDTFYVGSTFIEFWSGNGLPDFVGTGSGDQNAINGAICAVKKGTFDGVDCIDMDETATGTVD--LSWVRTSWTATSSCSLAFSSSANRRRVDPRELSSRDRHRQQSRRIWPRIDLPLGC---ELPDFVVARLTLMEMPVTAFSASLHSLPKASLCLVPSVPPLHRSMPNTLQNVTCEGVDIRYCSGDALVVRDSTLVSIDAGRYDEHEGVPSVDYRPK-PRHRSDSRHVGLRLSSPAHVTRQRRGGSPHHGLEQFYLRSNHRRGPEGAGNVGSVDGQQPIEVIVESSSLVKFQDKPVQSVNDPVMTIT-DSTTVSFTNGGYSNVPSGTCTIQADDPSTVTIDADEDELVLEGTCYVKV 495
BLAST of mRNA_F-serratus_M_contig1108.1015.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 317 bits (811), Expect = 1.560e-93 Identity = 232/570 (40.70%), Postives = 313/570 (54.91%), Query Frame = 1
Query: 1 LRIGGRFNSNLFEEFVTSSGTTDNFETYDYDYFTNIISIAGVFTSFGGSISISE------------------------DG-----TSDSFEWTSDAEEAWGRKLTFSLSTYSTLHTVELH-----------------------------ADTVGWQSFDVSQYLNADQYVTVISLVMRGTGSGAPGFYLLDARFSGVAEENPTNQFHVVSTFIERWENALYPDFVAERSGDQAAIMEAICAVKKASFDGVDCVGEDTTATGK-RMCLLFWL---RLFLSSSSATGRACNAQSNRFSSLSTVPYSRQNQWPTFNFLLVCVLSKLPL---FLYRAVYKKREFTSASQFSHYLYWVELSLHMAVPPNMTTPHTRHNITCEDLEIRFCDGDAMVVRDSKIVNIDAGRFD------------GEGVVTINRQPVGPASTTATGASHVDLGSSSSISGIRILGSNNFTFEATFNVEYNS-----EGSGYVGSRDGQQPIDVIVESSSLVTFDNMIVKSANDPVMTVSADSSAVVFDSCDFSSVNSGTCIIEMGDPSAVTAEDD-ELMLVDNCYIKV 1461
+RI ++++ E FVTSSGTTD FET+++DYFT+++SIAGVFTS G SISISE DG T+D+FEW+S+++EA R L+F L++Y+ + VEL D+ GWQ F++ D VT ++++M+GTGSGAPGF L +ARF G A +NP+N F+V ST++E W + YPDFVAE +GDQ AIM AICAVKKASFDGVDCVG D ATG+ M + W +F+ S + + + +++ + + T +++ +S L ++Y + E ++ + L V LS+ T T NITC + DGDA+VVRDS++VNIDAG +D G G+V + V T S + I+GI + GSNNFTFEAT E + EG G VGS DGQQPI+VIVESS+LV F +M V+S NDPVMTVS SS V FD+C FS+V SGTC+I+ S VT DD EL L CY+KV
Sbjct: 606 MRIAAPYDASFGEVFVTSSGTTDGFETFEFDYFTDVVSIAGVFTSGGQSISISEVEFVEEIQDGEVSVVDFDAPYDNGDGLWTGATTDAFEWSSESDEAMDRTLSFVLNSYALMEAVELQFPVGETYKFELTLYDDGDEIVSTFTGLESVDSEGWQRFELG---TIDDPVTEVTIIMKGTGSGAPGFKLANARFLGTAIDNPSNTFYVGSTYVESWRSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSGVYLDASFSIDDSPYTTDIILEDGAAGKTDTAAIIVMDGISDARLSEVWIYG--HYDSETSNDTPAVDGLGSVGLSI---------TGST--NITCRYASVYSSDGDALVVRDSEMVNIDAGPYDEEYRPWTIGQSRGTGIVVDSSDSVWIRRYTT---------SDNGIAGIHVSGSNNFTFEATIADECWTDDCVLEGEGNVGSLDGQQPIEVIVESSTLVKFQDMKVQSVNDPVMTVSG-SSGVSFDNCGFSNVESGTCVIQTDATSEVTTGDDPELSLDGTCYVKV 1149
BLAST of mRNA_F-serratus_M_contig1108.1015.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 311 bits (798), Expect = 1.150e-91 Identity = 228/570 (40.00%), Postives = 314/570 (55.09%), Query Frame = 1
Query: 1 LRIGGRFNSNLF----EEFVTSSGTTDNFETYDYDYFTNIISIAGVFTSFGGSISISE--------------------------DG-TSDSFEWTSDAEEAWGRKLTFSLSTYSTLHTVELH-------------------------------ADTVGWQSFDVSQYLNADQYVTVISLVMRGTGSGAPGFYLLDARFSGVAEENPTNQFHVVSTFIERWENAL--YPDFVAERSGDQAAIMEAICAVKKASFDGVDCVGEDTTATGKRMCLL-FWL---RLFLSSSSATGRACNAQSNRFSSLSTVPYSRQNQWPTFNFLLVCVLSKLPLFLYRAVYKKREFTSASQFSHYLYWVELSLHMAVPPNMTTPHT---RHNITCEDLEIRFCDGDAMVVRDSKIVNIDAGRFDGEGVVTINRQPVGPASTTATGASHVDLGSS----------SSISGIRILGSNNFTFEATFNVEYNSEGSGYVGSRDGQQPIDVIVESSSLVTFDNMIVKSANDPVMTVSADSSAVVFDSCDFSSVNSGTCIIEMGDPSAVT--AEDDELMLVDNCYIKV 1461
+RI GR++ L E +VTSSGTTD FETYD+D FTN I I+GVFTS +ISISE DG T+D+F+WT+D+++A GR + F L+ Y+ + VE+ ADT WQSFD+SQ+L+ADQ++T I++V++GTGSGAPGF +LD R G A +NPT+ +V STFIERW YPDFVAE +GDQ IMEAIC VKKASFDGVDCVG D ATG + W +F+ S + + S F+ + + + + V+ + + ++ + + + AVP +T + NIT D EIRF DGDA+VVRDS +++IDAG ++ P AS+ TG VD S + ++GI I+G+NNFTF+AT E ++ G G VG+ DGQQPIDVI+ESS+LVTF+++ V+S+NDP+M VS DSS V F++ S V + C+I+ DPS VT A++DEL L +CY+KV
Sbjct: 608 MRIAGRYDDELAAAFAEAYVTSSGTTDEFETYDFDVFTNEILISGVFTSASQTISISEVEFMEELQAGEIQISEWNTPLADARVDGPTTDAFDWTTDSDDAIGRTVEFELAWYAMVDAVEIKFPVGDTYKFDLELNDDQIRGEILKTITGFESADTADWQSFDLSQHLDADQFLTEINIVVQGTGSGAPGFAMLDIRVMGTAIDNPTDTVYVGSTFIERWTGLTDRYPDFVAEGTGDQKIIMEAICTVKKASFDGVDCVGGDDAATGTVVLPQGSWYVDGNIFMKSGVFLDGSFSEDSPYFTGI----ILEEGAAGKTDIDAMVVMDGISNAMTDNIWIRGHYDPDTSNDT----------PAVPGLGSTGLSVVGSTNITLRDAEIRFLDGDALVVRDSNMISIDAGEYEEL------YSPWSLASSRGTGLI-VDSCDSIYVRRHTLYENGVAGIHIVGTNNFTFDATIGEE-STVGEGNVGNLDGQQPIDVIIESSTLVTFNDLRVQSSNDPIMMVS-DSSTVSFNNLGLSLVEADACVIQADDPSTVTIDADEDELTLDGSCYVKV 1154
BLAST of mRNA_F-serratus_M_contig1108.1015.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 300 bits (769), Expect = 1.210e-88 Identity = 229/570 (40.18%), Postives = 305/570 (53.51%), Query Frame = 1
Query: 1 LRIGGRFNSNL--FEE-FVTSSGTTDNFETYDYDYFTNIISIAGVFTSFGGSISISE--------DG--------------------TSDSFEWTSDAEEAWGRKLTFSLSTYSTLHTVELH-----------------------------ADTVGWQSFDVSQYLNADQYVTVISLVMRGTGSGAPGFYLLDARFSGVAEENPTNQFHVVSTFIERWENALYPDFVAERSGDQAAIMEAICAVKKASFDGVDCVGEDTTATGK-RMCLLFWL---RLFLSSSSATGRACNAQSNRFSSLSTVPYSRQNQWPTFNFLLVCVLSKLPLFLYRAVYK-KREFTSASQFSHYLYWVELSLHMAVPPNMTTPHTRHNITCEDLEIRFCDGDAMVVRDSKIVNIDAGRFD------------GEGVVTINRQPVGPASTTATGASHVDLGSSSSISGIRILGSNNFTFEAT-----FNVEYNSEGSGYVGSRDGQQPIDVIVESSSLVTFDNMIVKSANDPVMTVSADSSAVVFDSCDFSSVNSGTCIIEMGDPSAVTAEDD-ELMLVDNCYIKV 1461
+RI ++SN FEE FVTSSGTTD FETYD+D+FTN +SIAGVFTS G SISISE DG T+D+F W S+++ A KL+F L +Y+ + VEL D+ GWQ F++ D VT I++VM+GTGS APGF L +ARF G A +NP++ F+V ST++ W + YPDFVAE +GDQ AIM AICAVKKASFDGVDCVG D ATG+ M + W +F+ S + + +++ + + T +++ +S L + E ++ + H L V LS+ T T NITC D + DGDA+VVRDS+++NID+G +D G G+V + V T D G ++GI + GSNNFTFEAT + + EG G VGS DGQQPI+V+VESS+LV F +M V+S NDPV+ VS SS V FD+C FS+V +GTC+I+ S VT DD EL L CY+KV
Sbjct: 419 MRIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFTNYVSIAGVFTSSGQSISISEVEFVEEIQDGEVSVVDFETPYYGDALWPGATTDAFVWASESDAAIDEKLSFVLKSYAVMEAVELQFPIGETYKFELTLYDDEDEIVSTFTGFESVDSEGWQRFELG---TIDDPVTEIAIVMKGTGSEAPGFKLANARFFGTAIDNPSDTFYVGSTYVTEWNSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSGVHLHAWFSIDDSPYTTDIILEDGAAGKTDTAAMIVMDNISNARLSNTWIIGNYDSETSNDTPTVHGLGSVGLSI---------TGST--NITCIDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYTT-----YDNG----VAGIHVSGSNNFTFEATIADKCWGEDCVLEGEGNVGSLDGQQPIEVVVESSTLVKFQDMKVQSVNDPVIVVSG-SSGVSFDNCGFSNVETGTCVIQTDTTSEVTTGDDPELSLDGTCYVKV 964
BLAST of mRNA_F-serratus_M_contig1108.1015.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 303 bits (775), Expect = 2.220e-88 Identity = 218/562 (38.79%), Postives = 295/562 (52.49%), Query Frame = 1
Query: 1 LRIGGRFNSNLFEEFVTSSGTTDNFETYDYDYFTNIISIAGVFTSFGGSISISE------------------------DG-----TSDSFEWTSDAEEAWGRKLTFSLSTYSTLHTVELHADTVGWQSFDVSQYLNAD------------------------------QYVTVISLVMRGTGSGAPGFYLLDARFSGVAEENPTNQFHVVSTFIERWENALYPDFVAERSGDQAAIMEAICAVKKASFDGVDCVGEDTTATGKRMCLLFWLRLFLSSS--SATGRACNAQSNRFSSLSTVPYSRQNQWPTFNFLLVCVLSKLPLFLYRAVYKKREFTSASQFSHYLYWVELSLHMAVPPNMTTPHTRHNITCEDLEIRFCDGDAMVVRDSKIVNIDAGRFD------------GEGVVTINRQPVGPASTTATGASHVDLGSSSSISGIRILGSNNFTFEATFNVEYNSEGSGYVGSRDGQQPIDVIVESSSLVTFDNMIVKSANDPVMTVSADSSAVVFDSCDFSSVNSGTCIIEMGDPSAVT--AEDDELMLVDNCYIKV 1461
+R+ GRF+S++ EEFVTSSGTT+ FETYD+DY + I IA VF+S G SISISE DG T+D FEW+S++ EA + LT SL+ Y T+ ++L FDV+ + N D QYVT I + M+GTGSGAPGF +LDA G +NP++ FHV STFIE W YPDFV SGDQ AI AIC VKK ++DGV+CV D TATG L W +++ + +G +T + + + V+ + V+ + + + +S + + NITCE ++IR+C GDA+VVRDS +VNIDAGR+D G G++ + TT ++++G+ I+GSNNFTFEAT E SEG G VGS DGQQPI+VIV +SSLVTF +M V+S NDPVMT++ DS+ V F + +S+V SGTC I+ DPS VT A++DEL+L CY+KV
Sbjct: 621 MRLAGRFSSSIAEEFVTSSGTTNGFETYDFDYKASYIRIAAVFSSPGESISISEVEIMEEVVEGEAPIDIFSTPYDNGDGLWNEPTTDGFEWSSNSNEAIDQSLTLSLAGYHTVTELQLMFPEGDTYKFDVTLFNNLDGTGEAYTTITGLESXXXXXXXXXXXXXXANQYVTSIGIEMKGTGSGAPGFAMLDALVLGTKIDNPSDTFHVGSTFIEYWGGDGYPDFVGSGSGDQNAINGAICGVKKGTYDGVNCVDVDDTATGTVD--LSWGAYYVNGNIFMQSGVLLLGSFGDDDPHTTDIVLEEGAEGNTDIDAIVVMDGIRDAWIEKVWIQGNYDPETD--------GISAVSGLGSACLSVVNSQNITCEGVDIRYCSGDALVVRDSTLVNIDAGRYDEEYLPWTIGLSGGTGLIVDTSDSIWVRRTTFY---------ENAVAGLHIMGSNNFTFEATIASEEGSEGEGNVGSVDGQQPIEVIVGTSSLVTFQDMKVQSVNDPVMTIT-DSTTVSFTNGGYSNVPSGTCTIQTDDPSTVTIDADEDELVLEGTCYVKV 1162
BLAST of mRNA_F-serratus_M_contig1108.1015.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 221 bits (563), Expect = 1.160e-59 Identity = 188/501 (37.52%), Postives = 250/501 (49.90%), Query Frame = 1
Query: 37 EEFVTSSGTTDNFETYDYDYFTNIISIAGVFTSFGGSISISE--------DG-----TS--DSFEWTSDAEEAWGRKLTFSLSTYSTLHTVELHADTVGWQSFDVSQYLNADQYVTVISLVMRGTGSGAPGFYLLDARFSGVAEENPTNQFHVVSTFIERWENALYPDFVAERSGDQAAIMEAICAVKKASFDGVDCVGEDTTATGKRMCLLFWL-----RLFLSSSSATGRACNAQSNRFSSLSTVPYSRQNQWPTFNFLLVCVLSKLPLFLYRAVYKKREFTSASQFSHYLYWVELSLHMAVPPNMTTPHTR----HNITCEDLEIRFCDGDAMVVRDSKIVNIDAGRFDGEGVVTINRQPVGPASTTATGASHVDLGSSSSISGIRILGSNNFTFEATFNVEYNSEGSGYVGSRDGQQPIDVIVESSSLVTFDNMIVKSANDPVMTVSADSSAVVFDSCDFSSVNSGTCIIEMGDPSAVTAE--DDELMLVDNCYIKV 1461
EE VTSSGTTD ETYD DY T+ + I+G F+S G SISISE DG TS D ++W + E + ++ + Y+TL +E+ T +QS D++ + A QYVT S+ + GSG F L+DAR G +NPT+ F+V STFI W PDFV + +GDQ AI AICAVKK ++DGVDCVG D +ATG + L F +F+ S + ++ + +++ +S + + H LY + S P + + NITC D + FCDGDAMVVR S +VNIDAG +D E T R TT + +GS G VGS +GQQPI+VIVE SSL+ F M V+S NDPVMT+S DS+AV F + SV SGTCII+ DPS VT + +DEL+L CY+KV
Sbjct: 512 EELVTSSGTTDGLETYDVDYRTSSVRISGDFSSPGQSISISEVEFVEEVVDGEVLLETSYFDDYDW--NFELSLFNRIGGTDEPYATLTGLEI-TGTAEYQSIDLTGF--AGQYVT--SIAVHVEGSGGSEFPLIDARILGTKIDNPTDTFYVGSTFIPEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGT-VVLAFGEYHVDGNIFMKSGVFLKGRYRFDDSPYNIDIFLEEGAPGNTDVDAMIVMDGISDARI--------------GDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWVDFCDGDAMVVRSSSVVNIDAGYYD-EYKATGWRVCTSWTPTTLPSKPPIYVGSQ-----------------------------GQVGSLEGQQPIEVIVEGSSLINFQEMWVRSVNDPVMTIS-DSTAVSFTNDGSYSVASGTCIIQTDDPSTVTIDPDEDELILEGTCYVKV 959 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1108.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1108.1015.1 >prot_F-serratus_M_contig1108.1015.1 ID=prot_F-serratus_M_contig1108.1015.1|Name=mRNA_F-serratus_M_contig1108.1015.1|organism=Fucus serratus male|type=polypeptide|length=488bp LRIGGRFNSNLFEEFVTSSGTTDNFETYDYDYFTNIISIAGVFTSFGGSIback to top mRNA from alignment at F-serratus_M_contig1108:249818..267056- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1108.1015.1 ID=mRNA_F-serratus_M_contig1108.1015.1|Name=mRNA_F-serratus_M_contig1108.1015.1|organism=Fucus serratus male|type=mRNA|length=17239bp|location=Sequence derived from alignment at F-serratus_M_contig1108:249818..267056- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1108:249818..267056- >mRNA_F-serratus_M_contig1108.1015.1 ID=mRNA_F-serratus_M_contig1108.1015.1|Name=mRNA_F-serratus_M_contig1108.1015.1|organism=Fucus serratus male|type=CDS|length=2928bp|location=Sequence derived from alignment at F-serratus_M_contig1108:249818..267056- (Fucus serratus male)back to top |