mRNA_F-serratus_M_contig1107.1007.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1107.1007.1
Unique NamemRNA_F-serratus_M_contig1107.1007.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 5.170e-100
Identity = 163/290 (56.21%), Postives = 216/290 (74.48%), Query Frame = 2
Query:  140 FPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGY---RAWG*R-CMRMPITYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLS 997
            FPT DLG C+W+D C +ER+ E GT+++SQ  Y++S++  FDV  TS  PASPG D+ PK +DESGG WPVREA+GS +W+S  +RPDI+ AVRAV R+AH   ER WKA++KIL YL ET+ LG    R  G    + +  +Y D A DR SV G++ T   TV+SH SKTQ +VSLS++E+E IAAG GVKEALF R  L F APE SG+S +VLED+QG  AL++NPLSSARSKH+DV +HFIR LFR+  IS+++V+++EQHAD+LTKALS+++  YH + +MN +
Sbjct:  220 FPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFA 508          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 5.140e-90
Identity = 163/292 (55.82%), Postives = 216/292 (73.97%), Query Frame = 2
Query:  140 FPTNDLGTCIWYDSCDIERNAELG-TVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLG--YRAWG*RCMRMPI--TYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            FPT DLG C+W+D C +ER+ E G T+++SQ  Y++ ++  FDV  TS  PASPG D+ PK +DESGG WPVREA+GS +W+S  +RPDI+ AVRAV R+AH   ER WKA++KIL YL ET+ LG  Y       + + +  +Y D A DR SV G++ T   TV+SH SKTQ +VSLS++E+E IAAG GVKEALF R  L F APE SG+S +VLED+QG  AL++NPLSSARSKH+DV +HFIR LFR+  IS+++V+++EQHAD+LTKALS+++  YH + +MNL E
Sbjct: 1609 FPTKDLGECVWFDGCAVERDLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 1898          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 7.410e-90
Identity = 160/293 (54.61%), Postives = 208/293 (70.99%), Query Frame = 2
Query:  134 QEFPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGYRAWG*RCMRMPI----TYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            ++FPT +LG C W+D C IER+ E GT+++SQ  Y++S++  FDV  TS  PA+PGADL PK  DE GG WPVREA+GS +W+S  +RPD++ AVRAV R+AH   +R W A+ KIL YL  T+ LG        + + +    +Y D   DR SV G++ T   TVVSH SKTQ +VSLS++E+E IAAG GVKEALF R  L F APE SG+S KVLED+QG  AL++NPLSS R+KH+DV +HFIR LFR+  ISV++V + EQHAD+LTKALSR +  YH + +MNL E
Sbjct:  955 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 9.970e-90
Identity = 156/293 (53.24%), Postives = 204/293 (69.62%), Query Frame = 2
Query:  134 QEFPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGYRAWG*RCMRMPI----TYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            ++FPT +LG C W+D C IER+ E GT+++SQ  Y++S++  FDV  TS  PA+PGADL PK  DE GG WPVREA+GS +W+S  +RPD++ AVRAV R+AH   +R W A+ KIL YL  T+ LG        + + +    +Y D   DR SV G++ T   TVVSH SKTQ +VSLS+ E+E IAAG GVKEALF R  L F APE  G+S +VLED+QG  AL++NPLSS R+ H+DV FHFIR LF +  ISV++V + EQHAD+LTKAL +A+  YH + +MNL E
Sbjct:  466 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNLPE 757          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 5.940e-89
Identity = 160/293 (54.61%), Postives = 208/293 (70.99%), Query Frame = 2
Query:  134 QEFPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGYRAWG*RCMRMPI----TYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            ++FPT +LG C W+D C IER+ E GT+++SQ  Y++S++  FDV  TS  PA+PGADL PK  DE GG WPVREA+GS +W+S  +RPD++ AVRAV R+AH   +R W A+ KIL YL  T+ LG        + + +    +Y D   DR SV G++ T   TVVSH SKTQ +VSLS++E+E IAAG GVKEALF R  L F APE SG+S KVLED+QG  AL++NPLSS R+KH+DV +HFIR LFR+  ISV++V + EQHAD+LTKALSR +  YH + +MNL E
Sbjct: 1334 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 7.450e-89
Identity = 160/293 (54.61%), Postives = 208/293 (70.99%), Query Frame = 2
Query:  134 QEFPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGYRAWG*RCMRMPI----TYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            ++FPT +LG C W+D C IER+ E GT+++SQ  Y++S++  FDV  TS  PA+PGADL PK  DE GG WPVREA+GS +W+S  +RPD++ AVRAV R+AH   +R W A+ KIL YL  T+ LG        + + +    +Y D   DR SV G++ T   TVVSH SKTQ +VSLS++E+E IAAG GVKEALF R  L F APE SG+S KVLED+QG  AL++NPLSS R+KH+DV +HFIR LFR+  ISV++V + EQHAD+LTKALSR +  YH + +MNL E
Sbjct: 1497 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 2.000e-86
Identity = 154/293 (52.56%), Postives = 202/293 (68.94%), Query Frame = 2
Query:  134 QEFPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGYRAWG*RCMRMPI----TYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            ++FPT +LG C W+D C IER+ + GT+++SQ  Y++S++  FDV  TS  PA+PGADL PK  D+ GG WPVREAVGS +W+S  +RPD++ AVRAV R+AH   +R W A+ KIL YL  T+ LG        + + +     Y D   DR SV  ++ T   TVVSH SK + +VSLS++E+E IAAG GVKEALF R  L F APE  G+S +VLED+QG  AL++NPLSS   KH+DV FHFIR LFR+   SV++V + EQHADILT+ALSRA+  YH + +MNL E
Sbjct:  546 KKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYAD-TEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKLMNLPE 837          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 3.690e-86
Identity = 159/293 (54.27%), Postives = 205/293 (69.97%), Query Frame = 2
Query:  134 QEFPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGY---RAWG*R-CMRMPITYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            ++FPT +LG C W+D C IER+ + GT+++SQ  Y+ S++  FDV  TS  PA+PG DL PK  DE GG WP REA+GS +W+S  + PD++ AVRAV R+AH   +R W A+ K L YL ET+ LG    R  G    M +  +Y D   DR SV G++ T   TVVSH SKTQ +VSLS++E+E IAAG GVKEALF R  L F APE SG+S +VLED+QG  AL++NPLSS R+KH+DV FHFIR LFR+  ISV++V + EQHAD+LTKALSRA+  YH + +M L E
Sbjct:  984 KKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKREDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQRGSGLGLAMYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVTFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLLYHRRKLMKLPE 1275          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 2.900e-84
Identity = 154/278 (55.40%), Postives = 199/278 (71.58%), Query Frame = 2
Query:  134 QEFPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGYRAWG*RCMRMPI----TYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSR 955
            ++FPT +LG C W+D C IER+ E GT+++SQ  Y++S++  FDV  TS  PA+PGADL PK  DE GG WPVREA+GS +W+S  +RPD++ AVRAV R+AH   +R W A+ KIL YL  T+ LG        + + +    +Y D   DR SV G++ T   TVVSH SKTQ +VSLS++E+E IAAG GVKEALF R  L F APE SG+S KVLED+QG  AL++NPLSS R+KH+DV +HFIR LFR+  ISV++V + EQHAD+LTKALSR
Sbjct: 1354 KKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSR 1630          
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Match: A0A6H5JJV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV7_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.300e-83
Identity = 152/290 (52.41%), Postives = 192/290 (66.21%), Query Frame = 2
Query:  140 FPTNDLGTCIWYDSCDIERNAELGTVKLSQEVYVESLITHFDVHPTSDTPASPGADLEPK*NDESGGNWPVREAVGSRLWLSAMTRPDITNAVRAVVRYAHTRTERLWKAVMKILPYLNETKVLGYRAWG*RCMRMPITYPDKANDRSSVYG---ISATFRDTVVSHASKTQYVVSLSTSESECIAAGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSKHVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMMNLSE 1000
            FPT  LG C W+D C IER+ E GT+K+SQ  Y++S++  FD   TS  P S G DL PK +DE GG WPVREA+GS  W+S  +RPD++ AVRAV R+AH   +R W A+ KIL YL ET+ LG            ITY      + S  G   ++ T    VVSH SKTQ +VSL ++E+E IAAG GVKEALF R  L F APE SG+S +VLED+QG  AL++NP+S  R+KH+DV FHFIR LFR+  ISV++V + EQHAD LTK LSRA+  YH + +MN  E
Sbjct:  327 FPTKYLGECEWFDGCAIERDVEAGTLKISQTAYIDSMVKRFDEQSTSRIPTSAGVDLGPKRDDEKGGEWPVREAIGSMTWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIRKILGYLKETRGLG------------ITY-----QQGSGLGWPWLATTVGGIVVSHGSKTQSIVSLYSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPISLGRTKHMDVRFHFIRGLFRSGDISVKFVPTTEQHADPLTKVLSRASLQYHRRKLMNSPE 599          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1107.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE5.170e-10056.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGF7_9PHAE5.140e-9055.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE7.410e-9054.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE9.970e-9053.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE5.940e-8954.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE7.450e-8954.61Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE2.000e-8652.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L060_9PHAE3.690e-8654.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN00_9PHAE2.900e-8455.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV7_9PHAE1.300e-8352.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1107contigF-serratus_M_contig1107:125563..127601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score85.5
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog34373.CCU76545
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20YYK@147548,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelLeotiomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size2039
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1107.1007.1prot_F-serratus_M_contig1107.1007.1Fucus serratus malepolypeptideF-serratus_M_contig1107 126101..126565 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.2798822-UTR-F-serratus_M_contig1107:125562..1261001622928986.2798822-UTR-F-serratus_M_contig1107:125562..126100Fucus serratus maleUTRF-serratus_M_contig1107 125563..126100 +
1690962656.9297147-UTR-F-serratus_M_contig1107:125562..1261001690962656.9297147-UTR-F-serratus_M_contig1107:125562..126100Fucus serratus maleUTRF-serratus_M_contig1107 125563..126100 +
1622928986.3032734-UTR-F-serratus_M_contig1107:126565..1276011622928986.3032734-UTR-F-serratus_M_contig1107:126565..127601Fucus serratus maleUTRF-serratus_M_contig1107 126566..127601 +
1690962656.9494724-UTR-F-serratus_M_contig1107:126565..1276011690962656.9494724-UTR-F-serratus_M_contig1107:126565..127601Fucus serratus maleUTRF-serratus_M_contig1107 126566..127601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.2913918-CDS-F-serratus_M_contig1107:126100..1265651622928986.2913918-CDS-F-serratus_M_contig1107:126100..126565Fucus serratus maleCDSF-serratus_M_contig1107 126101..126565 +
1690962656.940573-CDS-F-serratus_M_contig1107:126100..1265651690962656.940573-CDS-F-serratus_M_contig1107:126100..126565Fucus serratus maleCDSF-serratus_M_contig1107 126101..126565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1107.1007.1

>prot_F-serratus_M_contig1107.1007.1 ID=prot_F-serratus_M_contig1107.1007.1|Name=mRNA_F-serratus_M_contig1107.1007.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MRMPITYPDKANDRSSVYGISATFRDTVVSHASKTQYVVSLSTSESECIA
AGNGVKEALFARFFLPFTAPEMSGASFKVLEDDQGDNALIENPLSSARSK
HVDVCFHFIRDLFRTWKISVEYVASAEQHADILTKALSRANFHYHLKLMM
NLSE*
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mRNA from alignment at F-serratus_M_contig1107:125563..127601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1107.1007.1 ID=mRNA_F-serratus_M_contig1107.1007.1|Name=mRNA_F-serratus_M_contig1107.1007.1|organism=Fucus serratus male|type=mRNA|length=2039bp|location=Sequence derived from alignment at F-serratus_M_contig1107:125563..127601+ (Fucus serratus male)
AGTGTAAGGCTGACTTATGAATTTTCCGTAAGATTGCCGATGGGGTCATA GCCATGATCATTGATGTCTATATGGATGACCTACTGGCAGGAGGGTCACA GGAAGACTGCGAATCGTCGGTGTTGTCTCTGAACAAGAGTTTCCAACAAA CGACTTAGGAACGTGCATCTGGTACGATAGCTGTGACATCGAGAGGAACG CAGAGCTAGGTACGGTCAAGTTATCGCAAGAGGTATACGTCGAGAGCTTG ATCACACACTTTGATGTACACCCCACTTCCGACACCCCTGCTTCCCCCGG TGCCGATCTAGAGCCAAAGTAGAATGATGAGTCGGGAGGGAACTGGCCTG TGAGGGAGGCCGTCGGCAGCCGACTGTGGCTATCGGCCATGACGCGGCCG GACATCACGAATGCCGTGCGAGCTGTGGTGCGCTATGCCCATACCCGAAC TGAGAGGCTCTGGAAGGCGGTAATGAAGATATTACCGTACCTTAATGAAA CCAAGGTTTTGGGGTACCGGGCCTGGGGCTAGAGGTGTATGCGGATGCCG ATTACCTACCCTGACAAGGCCAATGATAGGAGTTCGGTGTACGGGATATC AGCAACGTTCAGAGATACTGTTGTAAGCCACGCGAGTAAGACGCAGTACG TCGTGTCTTTGTCGACCTCAGAATCAGAGTGCATTGCGGCTGGGAACGGG GTCAAGGAAGCTCTATTTGCGCGTTTCTTTCTGCCTTTTACTGCGCCCGA GATGAGTGGGGCAAGCTTTAAGGTCCTTGAAGACGACCAGGGGGATAATG CGCTGATTGAGAACCCCCTGAGCTCTGCTAGGAGCAAGCACGTCGATGTG TGTTTCCACTTCATTCGTGATCTATTCAGGACATGGAAAATCAGTGTAGA GTATGTAGCGTCGGCTGAGCAGCACGCAGACATTCTCACTAAGGCTCTAA GTAGGGCCAACTTTCATTACCATCTTAAGCTTATGATGAACCTTTCGGAA TAAGGTATCTTAACACCGAGCTGGTTGTTTCAAGCAGCAAATGTACCAGC AAATCACCTGAGGCAGGTAGGCTTGGGGCTAAGTTAGTGACAGGCAATGT CTCTGACAAAGCCCCATGTACCAAGATGCGGTCCTCTGATAGTAACTAGG CTTAGAATGCGTCATGCGAGTGGCTGACGTGTGTTTCTAAGTCGTGCCTA ATCTCCTTGCTTTGGAGGTGCGGCCGTTGGAATCCTTTGTGATAACGTCG GGTTTTATTTGGGACTTTATGCTTGGGGTTTGTGATCGGCGGGTCTGAGT TTCCCCTTGCCCCTTTTCTGCTTATTTGGGTATGATCCAGGGGCAGCTGT ATTCCCTAATTGATGGTTAGTCACTTGCGTGAAGAACCAGGGAGGGTGTC TGTACGAACACGCAGAGTACGGCGATCTACCTGCAATGATGGTTTCATGT TTTTGGACCAATTATGTTGAGTCACGTGTGGGCGTGGTTACGCCGCACTT TGGGAGGCGGATGCACTGCTCTCCCTTCCCTTTTCCTGTGTACTTTAATA AACGTGTTTGTCGGTAAGACTCTCATCGCTCCTCTACGTGAGAGGCAGTG GAGTCCTTGAATGCCGAGGCTATCAGCATGGCTTCCCTCACCATAAAAAG TTGCAAAGCATTTTGTCGCTGCCTTCCTTTGAGAATCAACACTAATCGTG GGTACTACGTTCCTGCTCTCTCTGGTGAGGATTGTTTCTTGTGGCACAAG CACTACTTTTTGCGCTATGCTCTTCAACACAGTGTGCCCTGAAATGTTGG GCTCTTCTTGGTGGGTACGCTAGGTGCATGTAGCCCGATGTGTCGGCCTC CGCACGCCACGAGTACGAGCTGGAGTTCGGGATGTTGAGATGTATAAATT AGTGTGTGCGTTGGTTCCGACGAAGAAAGTGTTTCCCACAATGCGGACTG CCTTTTATTCACGCTGCTTGTAGATCTCGACTTACGACCAAAACGAGGGA AAAGTCTACTGTGATCGGAGGGCCGACCTTGGAAGCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1107:125563..127601+

>mRNA_F-serratus_M_contig1107.1007.1 ID=mRNA_F-serratus_M_contig1107.1007.1|Name=mRNA_F-serratus_M_contig1107.1007.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig1107:125563..127601+ (Fucus serratus male)
ATGCGGATGCCGATTACCTACCCTGACAAGGCCAATGATAGGAGTTCGGT
GTACGGGATATCAGCAACGTTCAGAGATACTGTTGTAAGCCACGCGAGTA
AGACGCAGTACGTCGTGTCTTTGTCGACCTCAGAATCAGAGTGCATTGCG
GCTGGGAACGGGGTCAAGGAAGCTCTATTTGCGCGTTTCTTTCTGCCTTT
TACTGCGCCCGAGATGAGTGGGGCAAGCTTTAAGGTCCTTGAAGACGACC
AGGGGGATAATGCGCTGATTGAGAACCCCCTGAGCTCTGCTAGGAGCAAG
CACGTCGATGTGTGTTTCCACTTCATTCGTGATCTATTCAGGACATGGAA
AATCAGTGTAGAGTATGTAGCGTCGGCTGAGCAGCACGCAGACATTCTCA
CTAAGGCTCTAAGTAGGGCCAACTTTCATTACCATCTTAAGCTTATGATG
AACCTTTCGGAATAAATGCGGATGCCGATTACCTACCCTGACAAGGCCAA
TGATAGGAGTTCGGTGTACGGGATATCAGCAACGTTCAGAGATACTGTTG
TAAGCCACGCGAGTAAGACGCAGTACGTCGTGTCTTTGTCGACCTCAGAA
TCAGAGTGCATTGCGGCTGGGAACGGGGTCAAGGAAGCTCTATTTGCGCG
TTTCTTTCTGCCTTTTACTGCGCCCGAGATGAGTGGGGCAAGCTTTAAGG
TCCTTGAAGACGACCAGGGGGATAATGCGCTGATTGAGAACCCCCTGAGC
TCTGCTAGGAGCAAGCACGTCGATGTGTGTTTCCACTTCATTCGTGATCT
ATTCAGGACATGGAAAATCAGTGTAGAGTATGTAGCGTCGGCTGAGCAGC
ACGCAGACATTCTCACTAAGGCTCTAAGTAGGGCCAACTTTCATTACCAT
CTTAAGCTTATGATGAACCTTTCGGAATAA
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