mRNA_F-serratus_M_contig1105.985.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: D8LJS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS5_ECTSI) HSP 1 Score: 251 bits (642), Expect = 9.700e-79 Identity = 139/268 (51.87%), Postives = 179/268 (66.79%), Query Frame = 2
Query: 173 ALLSASLLLLLL--GGLHSPQRAAAAGELSIIMEISAQQ----------------YRSHRVDGGDDNRVSKFELEVGADG----EPLSWRTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPCRAGDY---RYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYKTL 901
+L+SASL+LLL+ GL P R A + +I +++ YR++RV G+D + VG+DG E +WRTL+FREVA L++ + F ++ +A+FWES PVT T DKPYEYV V+SP LA V++DG PFAE++AS +GT DV +FRN+R DARLV PCR G Y HLAAF+R+AP++QVV+FFGAVG GLE+E+ASR +E PVWLSTSGLGVYWLHARLDSVPKYYTY P+K L
Sbjct: 19 SLISASLVLLLVVSAGLLPPTRTTATAPERRLPDIMSEKTEDGVSPQXXXXXXXGYRANRVAAGNDFVKFVLQESVGSDGRDPAEAATWRTLNFREVADLFKKG--LPDCFLESMKEANFEAVFWESAPVTRTTTDKPYEYVLVDSPRLAAVTADGRPFAEHIASRKGTNDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFLRTAPRDQVVQFFGAVGEGLEDEIASRADETPVWLSTSGLGVYWLHARLDSVPKYYTYAPFKAL 284
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: A0A6H5L146_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L146_9PHAE) HSP 1 Score: 224 bits (570), Expect = 4.570e-68 Identity = 129/245 (52.65%), Postives = 166/245 (67.76%), Query Frame = 2
Query: 173 ALLSASLLLLLL--GGLHSPQRAAAA--GELSIIME------ISAQQ-----YRSHRVDGGDDNRVSKFELEVGADG----EPLSWRTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPCRAGDY---RYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYW 841
+L+SASL+LLL+ GL P+ A + G L IM +S QQ YR++RV G+D + VG+DG E +WRTL+FREVA L++ + F ++ +A+FWES+PVT T DKPYEYV V+SP LA V++DG+PFAE++AS +GT DV +FRN+R DARLV PCR G Y HLAAFVR+AP++QVVKFFGAVG GLE+E+ASR +E PVWLSTSGLGVYW
Sbjct: 19 SLISASLVLLLVLSAGLLPPRTTATSPDGRLPDIMSEKNEEGVSPQQQKGGAYRANRVAAGNDFVKFVLQESVGSDGRVPAEAATWRTLNFREVAELFKQG--LPDCFLESMKETNFEAVFWESVPVTRTTTDKPYEYVLVDSPRLAAVTADGSPFAEHIASKQGTDDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFVRTAPRDQVVKFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 261
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: A0A6M0ELL0_9CYAN (Uncharacterized protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M0ELL0_9CYAN) HSP 1 Score: 170 bits (430), Expect = 8.800e-48 Identity = 84/196 (42.86%), Postives = 124/196 (63.27%), Query Frame = 2
Query: 311 DDNRVSKFELEVGADGEPLSWRTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPCRAG-DYRYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYK 895
+ N++ K +++ G+ L+ L + EV LWQ EF E+F LA +P+ A FWE+ P+T T+++ +E+V +NSP+LA V + FAE++ T V F N+ GDA L++PC+ Y HLA FVR APK+Q+ KF+ +G LE+ L +R + P+W+ST GLGVYWLH R+DS PKYY + PY+
Sbjct: 26 EQNQLFKVQIKQIIPGKTLT--LLQWGEVIKLWQQDNEFRELFTTVLAKIPYPAFFWETPPITQNTLEQKFEFVAINSPTLANVPPEPDAFAEHIGHSLNTDLVKAFPNLGGDALLIAPCQNSLQANYVHLAKFVRCAPKQQIDKFWKTIGYTLEQILQAR-DPHPLWVSTCGLGVYWLHVRIDSFPKYYQHTPYR 218
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: A0A6B3M9Q3_9CYAN (Uncharacterized protein n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3M9Q3_9CYAN) HSP 1 Score: 168 bits (425), Expect = 4.210e-47 Identity = 80/173 (46.24%), Postives = 113/173 (65.32%), Query Frame = 2
Query: 380 LSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPCRAGDYR-YGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYK 895
L + EV LWQ EF E+F LA +P+ A FWE+ P+ T+++ +E+VT+NSP LA V + FA+++ V F N+ GDA L++PC+ G + Y HLA FVR APK+Q+ KF+ +G LE+ L +R+ P+W+STSGLGVYWLH R+DS PKYY + PY+
Sbjct: 45 LQWSEVIKLWQQDDEFRELFTTVLAKIPYPAFFWETPPINQKTLEQTFEFVTLNSPQLANVLPEPDAFAQHIGDSMNRDLVKVFPNLGGDALLIAPCQNGPQQHYTHLAKFVRCAPKKQIDKFWRTIGYTLEQTLQARE-PHPLWVSTSGLGVYWLHVRIDSFPKYYQHAPYR 216
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: B4VMX8_9CYAN (Uncharacterized protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VMX8_9CYAN) HSP 1 Score: 165 bits (418), Expect = 2.540e-46 Identity = 83/173 (47.98%), Postives = 111/173 (64.16%), Query Frame = 2
Query: 386 FREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPC-RAGDYRYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYKTL 901
+ E+ LWQ +P+F F + LA P A FWE+ P+T T+++ +E+V VNSPSLA V +D + FA + ++ + TF N+ DA LV PC +A Y HLAAF+R AP+ Q + VG+ LE+ L N RP W+STSGLGVYWLH RLDS PKYYTY+PYK +
Sbjct: 28 YSEIIQLWQHNPDFRAFFISLLADAPFSAFFWETPPITDATVNQVFEFVLVNSPSLANVQADPSDFARHFSAAGENKSIVTFPNLGKDALLVVPCPQASMSPYCHLAAFMRDAPEHQQHALWQNVGSALEQRL----NPRPTWVSTSGLGVYWLHIRLDSRPKYYTYQPYKVI 196
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: A0A2D6ITT3_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2D6ITT3_9GAMM) HSP 1 Score: 165 bits (418), Expect = 2.700e-46 Identity = 84/175 (48.00%), Postives = 107/175 (61.14%), Query Frame = 2
Query: 374 RTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPCRA-GDYRYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYK 895
R LS +V LWQ F + F+ TLA +P A FWE P+++ ++D P+E V V+SP L+ V++D PF L + +A F N+ GDA L++PC G Y HLA FVR AP + F+ VG L LAS+ PVWLSTSGLGVYWLHARLD PKYYTY PY+
Sbjct: 21 RALSCHDVCSLWQHDTGFVDFFSKTLADMPFSAFFWEVCPISMVSVDTPFECVVVDSPVLSGVTADSGPFGSQLDALHSPDGIALFENLGGDALLIAPCTGQGAVAYAHLALFVRHAPLQLQRTFWARVGTALAASLASK----PVWLSTSGLGVYWLHARLDQYPKYYTYAPYR 191
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: A0A1Z4VMG1_9GAMM (Uncharacterized protein n=4 Tax=Thiohalobacter TaxID=1273155 RepID=A0A1Z4VMG1_9GAMM) HSP 1 Score: 163 bits (412), Expect = 3.130e-45 Identity = 95/206 (46.12%), Postives = 121/206 (58.74%), Query Frame = 2
Query: 281 QYRSHRVDGGDDNRVSKFELEVGADGEPLSWRTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPC-RAGDYRYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYK 895
Q+ S DGG ++ S + ADG LS R V LWQ +P+F E F LA +P A FWE+ ++L T+D+PYE V V++PSLA + D FA+ G +A F N GDARL++PC +A Y HL FVR+AP Q F+ VGA L L+S P+WLSTSGLGVYWLHARLD+ PKYYTY Y+
Sbjct: 12 QFHSTTEDGGRIHKAS-----ILADGAALSRR-----RVMELWQDAPDFRERFNRFLAELPFAACFWETPAISLDTLDRPYEQVCVDAPSLAGIRPDPHSFADQFDRHCGGGGIAEFANPGGDARLIAPCPQASTDCYAHLLTFVRTAPAAQCDAFWRRVGAALGRALSST----PLWLSTSGLGVYWLHARLDTRPKYYTYAAYR 203
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: A0A2E9JVB4_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2E9JVB4_9GAMM) HSP 1 Score: 161 bits (407), Expect = 1.490e-44 Identity = 83/175 (47.43%), Postives = 104/175 (59.43%), Query Frame = 2
Query: 374 RTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPCRA-GDYRYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYK 895
+ LS +V WQ EF + F+ LA +P A FWE P++ ++ P+E V VNSP+L+ V++D PF L +ATF N+ GDA L++PC G Y HLA FVR AP + F+ VGA L LA PVWLSTSGLGVYWLHARLD PKYYTY PY+
Sbjct: 29 KVLSCHDVCEYWQHDTEFGDFFSKILADMPFRAFFWEVCPISTASVAAPFECVVVNSPALSGVAADSGPFGSQLDRLHSPDGIATFENLGGDALLIAPCTGQGAGAYAHLAIFVRHAPLQLQRTFWARVGAALAASLAGN----PVWLSTSGLGVYWLHARLDQYPKYYTYAPYR 199
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: UPI0005601DF8 (hypothetical protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI0005601DF8) HSP 1 Score: 159 bits (403), Expect = 4.490e-44 Identity = 79/176 (44.89%), Postives = 113/176 (64.20%), Query Frame = 2
Query: 374 RTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYLASGEGTTDVATFRNMRGDARLVSPCRAGDYR-YGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYKT 898
+ L++ EV LWQ + F + F++ LA P A FWE++PVT T+++ +E+V NSP LA+++ D + F Y +S E ++ TF N+ DA L+ P D Y HLAAF+R APK Q + +G L+++L N++PVW+STSGLGV WLH RLDS PKYY +EPYK+
Sbjct: 24 KQLAYSEVIELWQNNSSFRDFFSSLLANAPFAAYFWETLPVTKSTVERKFEFVLANSPQLAQINPDPSDFERYFSSAE--KEIVTFPNLGNDALLIVPLPIADRSAYPHLAAFIREAPKSQQHLLWQTIGKELKQKL----NQQPVWVSTSGLGVSWLHVRLDSSPKYYCFEPYKS 193
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Match: UPI000C7E47F9 (hypothetical protein n=1 Tax=Oceanicoccus sp. KOV_DT_Chl TaxID=1904639 RepID=UPI000C7E47F9) HSP 1 Score: 157 bits (398), Expect = 2.800e-43 Identity = 86/179 (48.04%), Postives = 110/179 (61.45%), Query Frame = 2
Query: 374 RTLSFREVAGLWQTSPEFAEMFAATLAAVPHDAIFWESIPVTLGTMDKPYEYVTVNSPSLARVSSDGTPFAEYL--ASGEGTTDVATFRNMRGDARLVSPCR-AGDYRYGHLAAFVRSAPKEQVVKFFGAVGAGLEEELASRQNERPVWLSTSGLGVYWLHARLDSVPKYYTYEPYKTL 901
+ LSFR+V LWQ +P+F E + +AAV DA FWE +TL +D+ +E V V+SP L VSSD FA Y A E V F N+ GDARLV P + D Y HLA FVR+ Q ++ +GA +E L+ E+P+W+STSGLGVYWLH RLD PKYYTY PYK++
Sbjct: 25 QVLSFRQVLQLWQCNPQFCEFYNQLMAAVEFDAFFWELPALTLANIDRDFECVLVDSPDLKTVSSDPATFAPYFNSARAEAKNTVVCFDNLGGDARLVVPTPVSADADYTHLAKFVRAGLASQQRDYWQQLGASIESLLS----EQPLWVSTSGLGVYWLHIRLDQRPKYYTYLPYKSV 199 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1105.985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1105.985.1 >prot_F-serratus_M_contig1105.985.1 ID=prot_F-serratus_M_contig1105.985.1|Name=mRNA_F-serratus_M_contig1105.985.1|organism=Fucus serratus male|type=polypeptide|length=282bp MFVQTLSARSSSNSLSPPSPPQVFPWRVSLSIRFLGFIALLSASLLLLLLback to top mRNA from alignment at F-serratus_M_contig1105:126989..136208- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1105.985.1 ID=mRNA_F-serratus_M_contig1105.985.1|Name=mRNA_F-serratus_M_contig1105.985.1|organism=Fucus serratus male|type=mRNA|length=9220bp|location=Sequence derived from alignment at F-serratus_M_contig1105:126989..136208- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1105:126989..136208- >mRNA_F-serratus_M_contig1105.985.1 ID=mRNA_F-serratus_M_contig1105.985.1|Name=mRNA_F-serratus_M_contig1105.985.1|organism=Fucus serratus male|type=CDS|length=1692bp|location=Sequence derived from alignment at F-serratus_M_contig1105:126989..136208- (Fucus serratus male)back to top |