mRNA_F-serratus_M_contig1105.981.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1105.981.1
Unique Name	mRNA_F-serratus_M_contig1105.981.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: D8LJS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS1_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.480e-28
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 1

Query:    1 MANVKAEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDKIKSGAGGVAK 228
            M++VK EEKVPV EVLEEDDEFEEFAEANWDETAEDQEDLQQWQD XXXXXXXXDFCNQLRAEL+K K  A G AK
Sbjct:    1 MSDVKVEEKVPVAEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTKPPATGQAK 76

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: A0A7S2CP29_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP29_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.720e-12
Identity = 41/74 (55.41%), Postives = 45/74 (60.81%), Query Frame = 1

Query:   16 AEEK--VPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDKIKSGAGGVAKT 231
            AEEK   P  EVLEEDDEFEEFAE NWD++AED ED  QW++         DF NQLRAEL    S  G    T
Sbjct:   18 AEEKPEAPKLEVLEEDDEFEEFAEKNWDKSAEDGEDAAQWEEDWDDGELDDDFTNQLRAELTAPGSTGGRRGST 91

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: A0A7S4EAY6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAY6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.080e-10
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 1

Query:    7 NVKAEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDK 198
            N  AE++ P  EV EEDDEFEEFA+ NWD  AED ED + WQD X       DFC  LR EL K
Sbjct:  111 NKPAEKRKPDYEVYEEDDEFEEFAQDNWDAAAEDAEDPKLWQDDXDDDDVDDDFCRHLREELQK 174

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: A0A7S1ZHX0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHX0_TRICV)

HSP 1 Score: 58.9 bits (141), Expect = 1.480e-9
Identity = 32/60 (53.33%), Postives = 34/60 (56.67%), Query Frame = 1

Query:   31 PVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDKIKSG 210
            P+TE +EEDDEFEEF    WD   ED ED QQWQD         DF   LRAEL K   G
Sbjct:   38 PITEAIEEDDEFEEFEPCRWDAHDEDAEDAQQWQDNWDDDDIEDDFTKNLRAELTKNSEG 97

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: A0A8J5X4N4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4N4_DIALT)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-8
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1

Query:    1 MANVKAEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDK 198
            MA+ K EE +   ++LEEDDEFEEF   +WD TAED ED Q WQD         DF  QLRAEL K
Sbjct:    1 MADQKKEEDL---DMLEEDDEFEEFEAESWDLTAEDAEDQQLWQDDWDEDDAKNDFTQQLRAELAK 63

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: I1CD22_RHIO9 (26S proteasome complex subunit DSS1 n=2 Tax=Rhizopus TaxID=4842 RepID=I1CD22_RHIO9)

HSP 1 Score: 52.4 bits (124), Expect = 3.860e-7
Identity = 29/52 (55.77%), Postives = 32/52 (61.54%), Query Frame = 1

Query:   43 VLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDK 198
            VLEEDDEFEEFA  +W E  EDQ D   W+D         DF  QLRAEL+K
Sbjct:   24 VLEEDDEFEEFAAEDWGEEEEDQNDAHFWEDNWDDDDIEDDFSKQLRAELEK 75

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: A0A0U2T7H1_9MAXI (Putative 26S proteasome complex subunit DSS1 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2T7H1_9MAXI)

HSP 1 Score: 51.2 bits (121), Expect = 7.400e-7
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1

Query:   43 VLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELD 195
            +LEEDDEFEEF + +WD   EDQ D++ W+D         DFCNQLR  L+
Sbjct:   10 LLEEDDEFEEFEQEDWDIRREDQTDIKVWEDNWDNDDLESDFCNQLRKVLE 60

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: UPI00077AF97D (26S proteasome complex subunit DSS1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AF97D)

HSP 1 Score: 49.7 bits (117), Expect = 3.510e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1

Query:   43 VLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDK 198
            +LEEDDEFEEFA   W    EDQ D+  W+D         DF +QLRAEL+K
Sbjct:   11 LLEEDDEFEEFAAEEWTVVDEDQTDIHVWEDNWDDDTVEDDFSHQLRAELEK 62

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: L1J5M5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5M5_GUITC)

HSP 1 Score: 49.3 bits (116), Expect = 4.540e-6
Identity = 29/62 (46.77%), Postives = 34/62 (54.84%), Query Frame = 1

Query:    7 NVKAEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAEL 192
            N K E K  V E++EEDDEFEEF +  W E  E+ ED Q W D         +F  QLR EL
Sbjct:    4 NAKEETKQQVNEIVEEDDEFEEFEDEGWMERKEEPEDKQYWADDWDNDDINEEFAAQLRTEL 65

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BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Match: UPI0006B09B7F (26S proteasome complex subunit SEM1-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B09B7F)

HSP 1 Score: 48.9 bits (115), Expect = 7.210e-6
Identity = 28/62 (45.16%), Postives = 34/62 (54.84%), Query Frame = 1

Query:   43 VLEEDDEFEEFAEANWDETAEDQEDLQQWQDXXXXXXXXXDFCNQLRAELDKIKSGAGGVAK 228
            +LEEDDEFEEF   +W   AED ED+  W+D         DF  QLR EL+K      GV +
Sbjct:   11 LLEEDDEFEEFPAEDWTGKAEDDEDVNVWEDNWDDDNIEDDFSKQLREELEKQGFKVDGVGE 72

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1105.981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
D8LJS1_ECTSI	2.480e-28	85.53	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2CP29_9STRA	4.720e-12	55.41	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S4EAY6_9STRA	9.080e-10	56.25	Hypothetical protein n=3 Tax=Pelagomonas calceolat...	[more]
A0A7S1ZHX0_TRICV	1.480e-9	53.33	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
A0A8J5X4N4_DIALT	1.070e-8	54.55	Uncharacterized protein n=1 Tax=Diacronema lutheri...	[more]
I1CD22_RHIO9	3.860e-7	55.77	26S proteasome complex subunit DSS1 n=2 Tax=Rhizop...	[more]
A0A0U2T7H1_9MAXI	7.400e-7	50.98	Putative 26S proteasome complex subunit DSS1 n=1 T...	[more]
UPI00077AF97D	3.510e-6	51.92	26S proteasome complex subunit DSS1-like n=1 Tax=A...	[more]
L1J5M5_GUITC	4.540e-6	46.77	Uncharacterized protein n=1 Tax=Guillardia theta (...	[more]
UPI0006B09B7F	7.210e-6	45.16	26S proteasome complex subunit SEM1-like n=1 Tax=L...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1105	contig	F-serratus_M_contig1105:102423..106159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	DSS1/SEM1
Ec32 ortholog	Ec-12_003050.1
Exons	3
Model size	234
Cds size	234
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1105.981.1	prot_F-serratus_M_contig1105.981.1	Fucus serratus male	polypeptide	F-serratus_M_contig1105 102423..106159 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928980.196953-CDS-F-serratus_M_contig1105:102422..102491	1622928980.196953-CDS-F-serratus_M_contig1105:102422..102491	Fucus serratus male	CDS	F-serratus_M_contig1105 102423..102491 +
1690962654.167852-CDS-F-serratus_M_contig1105:102422..102491	1690962654.167852-CDS-F-serratus_M_contig1105:102422..102491	Fucus serratus male	CDS	F-serratus_M_contig1105 102423..102491 +
1622928980.2151241-CDS-F-serratus_M_contig1105:103626..103689	1622928980.2151241-CDS-F-serratus_M_contig1105:103626..103689	Fucus serratus male	CDS	F-serratus_M_contig1105 103627..103689 +
1690962654.1802392-CDS-F-serratus_M_contig1105:103626..103689	1690962654.1802392-CDS-F-serratus_M_contig1105:103626..103689	Fucus serratus male	CDS	F-serratus_M_contig1105 103627..103689 +
1622928980.2310956-CDS-F-serratus_M_contig1105:106057..106159	1622928980.2310956-CDS-F-serratus_M_contig1105:106057..106159	Fucus serratus male	CDS	F-serratus_M_contig1105 106058..106159 +
1690962654.1881223-CDS-F-serratus_M_contig1105:106057..106159	1690962654.1881223-CDS-F-serratus_M_contig1105:106057..106159	Fucus serratus male	CDS	F-serratus_M_contig1105 106058..106159 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1105:102423..106159+
coding sequence from alignment at F-serratus_M_contig1105:102423..106159+

protein sequence of mRNA_F-serratus_M_contig1105.981.1

>prot_F-serratus_M_contig1105.981.1 ID=prot_F-serratus_M_contig1105.981.1|Name=mRNA_F-serratus_M_contig1105.981.1|organism=Fucus serratus male|type=polypeptide|length=78bp
MANVKAEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDWDDD
DKDDDFCNQLRAELDKIKSGAGGVAKT*

mRNA from alignment at F-serratus_M_contig1105:102423..106159+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1105.981.1 ID=mRNA_F-serratus_M_contig1105.981.1|Name=mRNA_F-serratus_M_contig1105.981.1|organism=Fucus serratus male|type=mRNA|length=3737bp|location=Sequence derived from alignment at F-serratus_M_contig1105:102423..106159+ (Fucus serratus male)
ATGGCGAACGTGAAGGCTGAGGAGAAGGTACCAGTTACGGAAGTGCTGGA
AGAGGACGACGAGTTCGAGGTGAGGGACGTCCAAGGCACAACTCGCTCCA
AAATGCGCCACTCTTGAGATGTTTGTTGACCCCTGCTGTAGCTCCTCCGT
ATCTTACCAATCTGCGGAAGTCGGTTGTTTTGTTGATCTGTTAATACCCT
GTAGTCCTGAGCAGTTGTTGTGGATCGGTATCCTTCGGCGACTCCAAATT
GTGGTACTGTGTACGGTTGTGTGTACGGTAGTTGTAGCATTCCGTCTAGA
CTAATATTGTCAACTGCGACATCTCTATCTTGCTTTGTCTGAGGCACCAG
CTCCACCGTCCTGACTGAACAATTGCTCTCGCTGCGTCCAATCGGCACCA
GTGTCATACTGCTACATCAGCAGTAAGTGACTGCTGTGCTGTCATTTTCC
AACCGTAGACTTGCGTGCGAAGTCCTCTTTACAGTCTAGCATATTTTCTG
TGTGTTGTGTAATACAGATATTGTACAGAAAGTTTGTTTCTCACTACCGA
GCATTACGGTGGGCTTCTTCCCGACCTGTTGACCCAATGTTACTATTATA
ATCTGAACGCATCGATCCCACCTACCTGGTAAACATTTTCACATTCTCCC
CCCTGACTGGGGGATGCTCAGAAGGTTTAGATTCGTTCAGATTTTACAAG
TACATATCACTCTCCGACTGAAGAGCCTCTCTTACGACAGACTGCAGCAG
TATGGATGTAACTATTACGTACCAGGTAGTCTATAGTCATAACTCAAAGC
AGAGTATGGGTCAACCGGGTGGCGAGGTTGCCGCAAATCAGCTTGTGGAC
AGCTGAACAGGAAAATGAACTGGTCTCTGTCCCCGTTCGCGAGTCCAAAG
TGTCGAGCAGCACCACCTGCAGTACTCACTTATAACAAGTATAAGATCAG
TTTTCCGTTGACTTGACGATGGCTCTGCTGATTAAATATACCTCTGTGAC
TGTAACCTCGTCCAGCGGCCAGGGGCAATCTACTCATGTTCGAATCCAGC
ATCACCTTATCATGAAATACCTTTACAGGTACTCTCTAAAAGCCGGCGCA
TTTCCACCACCTTTACCTGAGAAGCCGTGCTTTTCCGAGACGGCTTCCTC
TCCCTCGACTACTTACTGTGGTGTTGCCGTCTATGCGTGTGTGTTGGCGT
ACAGGAGTTTGCCGAAGCGAACTGGGATGAGACCGCGGAGGACCAGGAAG
ACCTTCAGCAATGGCAGGTGAACAGACTGCAGCAGCACAAGTAGTACGGA
AGTAACAGTACTTCGTTCCTAGGACGCGGCAGTTTTATCAAAATCACATT
AGTCTAAATAGTGACCTTTCATGCACTACGGTCCCCTAACGGTCTACAAA
ACTATAAACTCGACCGACTTCCTAAAACTCACGAGTTTTTATTTTTTTAT
TTTTTTATTCATACTTCTCAGTAAAAGTCACAAAACAAGTATCGACTAAT
AATAATCTACCAGGGTATAGACTATCACCAGTAGCTATTAATAATAGGCT
GCCACGCAGTCAGTTCCAAGGTTGGTTGACGTTTCCACCGGATGTAGCTC
TAGTCTAGAGTCAGTTGTTGTAAATGTTGATTCGCACACTAAGTATGTCG
TAATGTCCCTGCAACTATTTAATACTGAAGAAACTACGACGACATAAGAG
TCAGAGCCCTAGCCTATCAAATGTCAATCCCGCCCGTGGTCAAAGAGGCA
CGAAGGATCGTATAACCGCCTCTGATACTTTCTGCATCACACACGTCATA
GTCTATAATACCGATAATAGTAGTAATAGTCTATAATAGTATTGATAGTA
TATTAGTATAGCGGATGTGCGAAAAGAGAAGCGCATAAAAAACTGGTCCA
TGGTGACGCCTGGAAAGGTAGCACCCGTTACTGGTACTACCTTGAGGACT
ACTGGCCCTGTGCCGGCGGACTTTAGGCAGTGTACGCCATTGGTACGCAA
ATGCGTGACCCGATAAACTCAGGACTGACCCGATGGCGATTGACGGGGAC
GGGACCAAACGCCGTCGTTGAAAGCGTGAGAAAGAAGAGGAACCCGTGAG
AAGGCACCAGATTCAGCCTGAAGCGGGCTGACGCGGGACGGGACGGGACG
GCTGAACCTTTCTCGCGAGACCAAATTCTTAGGCGCGAACGAGGACAGGG
AACTAATCATTTTCCCTGTTCAGCTGACAACGAGCAGGACTGTATGTATG
TATGGTCATCACATAATACAAGGGTAAGGTTGCCAATCCTGCTCGTGGTC
AGCTGATCAGGTAAAGTAAATATTTCCCTGTCCCCGTCCGCGCCTGAGAA
TTTGATCTCGCGAGACGGGTTCGGCAGTCCCGTATCCGGTGCTTGCTTAC
GGGATTCCTCCCGTCCGCGGCGGCATCCATATATTTATTTAAACCGCCAT
ACGCCATCGGGTCAGCCCCGAGCTTATCGGGTGACGCAATTGCGTACCAA
TGGCGTTCACTGCCGAGAGTCTGCCGACACTGGGTCAGTAAACCTCAAGA
TAGTTCCAGTAACGGGTGCTGCCTTGGCAGGTCACCATGGACCAATTAAT
ATGCGTCTCTCTTTCCCACACCCACTAATGGTATGAAGTGAGCATGTTGA
AAGTACCGCATATATCCTGGTTGATTCCACACTCTGGTGAAAGTGCTGAC
CATACACTCTGCAGTGGTGGTGGAGGGGAGGCCTTCCACTGCAATGTTCC
CAAGGAGGCACTCGTAGCGTTTTCCGCGGATAAGACTCCCTTCCCTCCTC
CCCACTGATAATGTATATGGTACCAGGTATTGTGTCTATTGCATCCAAAT
CAAGTAACGGAAGGGTCAGATGAACTCTCTTCAAGCAGCACACACAACTC
CTCTGAAAGAAGTGCTGACAGATAACAATTTAAACGAAAGGTCTTACCGA
TGGAATCTCCAAAATATCCTATTAATAGTTGATTTTGTCCATCACCTCCT
CTATAAAGAAAAATCAATTATGGCCTGAAAAGCTTCCAGGCCGGAATCTA
CAGCAGCATTCGACCCAGATCACCTTACTTAAAGGGTAGATTTACCGCAG
GCACCTTGTAATTTTATTAACGTGTGTAAAATTCAAAATCCCATGATGTT
GCTGTAGTACGTCCAGCAGTGGTGCTCTTTTACCGCACACGCCCACCAGG
TCACAGCTTCCGTTCACCTTTGCCTCCTTGGCCCATAGCCGCTCAAGCTC
AGTCGCTGTGCCCCTGGGGTGAGTATCCCGGGTGCTATGTGCGAAATACC
TACTTGCCTCCATTAGCGCTTCTGCTCGAAGCTCAAGGCGCCGGGGAAGA
ACTTCGGCGCTCGGAAAAATCGATCAAAACAGGAACTCATGAAAGTTTTT
TTTATATCTCGTTTTCATGGCCGAATTCCGTTTAAGATTTGGAATTTCGT
GAGTTATGTTCACACTCGGAAGGAATATATCCCTGGGAAAGACTCAAATG
TTGAGTTTACCAACACCCTATTCTCAAAAATACTGTATGACAAGGCCTGA
ATGCGCCAATAATATAAATAAATAAAACATTTCAGTACTGTAACCTTATG
TTTTGTCGCATTAACGTTTCTCTGGTTATCATCAGGACGACTGGGATGAC
GATGACAAAGACGACGACTTCTGCAACCAGCTGAGGGCGGAGCTAGATAA
AATCAAGAGCGGGGCGGGTGGTGTTGCGAAAACATGA

Coding sequence (CDS) from alignment at F-serratus_M_contig1105:102423..106159+

>mRNA_F-serratus_M_contig1105.981.1 ID=mRNA_F-serratus_M_contig1105.981.1|Name=mRNA_F-serratus_M_contig1105.981.1|organism=Fucus serratus male|type=CDS|length=468bp|location=Sequence derived from alignment at F-serratus_M_contig1105:102423..106159+ (Fucus serratus male)
ATGGCGAACGTGAAGGCTGAGGAGAAGGTACCAGTTACGGAAGTGCTGGA
AGAGGACGACGAGTTCGAGATGGCGAACGTGAAGGCTGAGGAGAAGGTAC
CAGTTACGGAAGTGCTGGAAGAGGACGACGAGTTCGAGGAGTTTGCCGAA
GCGAACTGGGATGAGACCGCGGAGGACCAGGAAGACCTTCAGCAATGGCA
GGAGTTTGCCGAAGCGAACTGGGATGAGACCGCGGAGGACCAGGAAGACC
TTCAGCAATGGCAGGACGACTGGGATGACGATGACAAAGACGACGACTTC
TGCAACCAGCTGAGGGCGGAGCTAGATAAAATCAAGAGCGGGGCGGGTGG
TGTTGCGAAAACATGAGACGACTGGGATGACGATGACAAAGACGACGACT
TCTGCAACCAGCTGAGGGCGGAGCTAGATAAAATCAAGAGCGGGGCGGGT
GGTGTTGCGAAAACATGA