mRNA_F-serratus_M_contig1105.978.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1105.978.1
Unique NamemRNA_F-serratus_M_contig1105.978.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1105.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1105contigF-serratus_M_contig1105:40064..41174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size653
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1105.978.1prot_F-serratus_M_contig1105.978.1Fucus serratus malepolypeptideF-serratus_M_contig1105 40266..41174 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.5925224-UTR-F-serratus_M_contig1105:40063..402651622928979.5925224-UTR-F-serratus_M_contig1105:40063..40265Fucus serratus maleUTRF-serratus_M_contig1105 40064..40265 +
1690962653.8814883-UTR-F-serratus_M_contig1105:40063..402651690962653.8814883-UTR-F-serratus_M_contig1105:40063..40265Fucus serratus maleUTRF-serratus_M_contig1105 40064..40265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.6038566-CDS-F-serratus_M_contig1105:40265..406851622928979.6038566-CDS-F-serratus_M_contig1105:40265..40685Fucus serratus maleCDSF-serratus_M_contig1105 40266..40685 +
1690962653.8961039-CDS-F-serratus_M_contig1105:40265..406851690962653.8961039-CDS-F-serratus_M_contig1105:40265..40685Fucus serratus maleCDSF-serratus_M_contig1105 40266..40685 +
1622928979.617298-CDS-F-serratus_M_contig1105:41144..411741622928979.617298-CDS-F-serratus_M_contig1105:41144..41174Fucus serratus maleCDSF-serratus_M_contig1105 41145..41174 +
1690962653.9050574-CDS-F-serratus_M_contig1105:41144..411741690962653.9050574-CDS-F-serratus_M_contig1105:41144..41174Fucus serratus maleCDSF-serratus_M_contig1105 41145..41174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1105.978.1

>prot_F-serratus_M_contig1105.978.1 ID=prot_F-serratus_M_contig1105.978.1|Name=mRNA_F-serratus_M_contig1105.978.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MSKGRRTKKRTAARGVEFSSSSAVPTPDNPQDSGVQSSEDSGHNLEAKMS
DGEGQVSTMTGGVEQDSAVAAPLEKRYAPPPPPRLYAAAAPRALSNREYH
LQLAGRLYEMEMKRILSGRQEKLSAISEQYYSHLLESASPTPSSTYPTAV
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mRNA from alignment at F-serratus_M_contig1105:40064..41174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1105.978.1 ID=mRNA_F-serratus_M_contig1105.978.1|Name=mRNA_F-serratus_M_contig1105.978.1|organism=Fucus serratus male|type=mRNA|length=1111bp|location=Sequence derived from alignment at F-serratus_M_contig1105:40064..41174+ (Fucus serratus male)
CGCGAGCGAGGTCAGATTCCTCGGATTTGTCGTGGACCAAGAGGAGGTGT
GATCCTGAGCTACCACGAAATACTCGGTTTTAGGAGTCCCGCGGGAGGGT
CGAAAACGCGATAAAAAAAACCGTCTTGAAAAATAATAAAAACAGCAAAA
GATATACCGGTAGCATATTTCTTCCATATCACATATTACGGACCAGAGTG
GTATGTCCAAGGGTCGGAGGACAAAGAAAAGGACTGCAGCGCGTGGCGTT
GAATTTTCATCTTCATCAGCGGTGCCCACCCCGGATAATCCTCAAGATTC
GGGTGTACAATCAAGTGAAGACAGTGGCCACAATCTGGAGGCGAAGATGT
CCGATGGCGAGGGCCAAGTCTCGACTATGACTGGTGGCGTGGAGCAGGAT
TCGGCCGTGGCCGCTCCCCTAGAAAAAAGGTATGCCCCACCGCCGCCTCC
TCGCTTGTACGCAGCGGCCGCACCTCGCGCTCTGTCAAACAGGGAGTACC
ATCTACAGTTGGCTGGTCGACTCTACGAAATGGAGATGAAGCGAATCCTC
AGCGGGCGACAGGAGAAACTCTCTGCCATTTCCGAGCAGTATTACAGCCA
TCTGCTCGAGTCCGCTTCTCCGGTAAGGGTCGTTTTAATCATGAGATTCG
ATGTCAAAATAAGTGAAACAATAGTTGTCAAATAAATCAACACACTTTTT
GGTCGTTTTAAACACACACGGGCGCGTGTCACTTATTTTGACATGTTGCG
AGAGGTTGTTTAAAGAAAAATCCGAACAGCACCTAGACTTTTTGAGCTTC
CCCCGTAGGGGGAGGAAATGTCAAAACGTTTAGACGGGGTCAAAGGCTGC
AGTGACAAAAACCTCTTCATGGTATTAAACAGGTTCCCCAATGTAGATAA
CATTGGGTCAACAATATAATGTCGGGGAGAAACCCACCGTTATACTGTAC
ATTTACATTAATCTCCATGCAGGGACACCATAAAAGCATTAGACAAAAAC
CAGAGACAGAGTAGTACTACCTCCAAATGGTATTATTAATAGTTTGTTGT
TGCGCCGCTTTTACATCCGCACGAAACATAGACCCCGAGCAGCACCTACC
CTACAGCAGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1105:40064..41174+

>mRNA_F-serratus_M_contig1105.978.1 ID=mRNA_F-serratus_M_contig1105.978.1|Name=mRNA_F-serratus_M_contig1105.978.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1105:40064..41174+ (Fucus serratus male)
ATGTCCAAGGGTCGGAGGACAAAGAAAAGGACTGCAGCGCGTGGCGTTGA
ATTTTCATCTTCATCAGCGGTGCCCACCCCGGATAATCCTCAAGATTCGG
GTGTACAATCAAGTGAAGACAGTGGCCACAATCTGGAGGCGAAGATGTCC
GATGGCGAGGGCCAAGTCTCGACTATGACTGGTGGCGTGGAGCAGGATTC
GGCCGTGGCCGCTCCCCTAGAAAAAAGGTATGCCCCACCGCCGCCTCCTC
GCTTGTACGCAGCGGCCGCACCTCGCGCTCTGTCAAACAGGGAGTACCAT
CTACAGTTGGCTGGTCGACTCTACGAAATGGAGATGAAGCGAATCCTCAG
CGGGCGACAGGAGAAACTCTCTGCCATTTCCGAGCAGTATTACAGCCATC
TGCTCGAGTCCGCTTCTCCGATGTCCAAGGGTCGGAGGACAAAGAAAAGG
ACTGCAGCGCGTGGCGTTGAATTTTCATCTTCATCAGCGGTGCCCACCCC
GGATAATCCTCAAGATTCGGGTGTACAATCAAGTGAAGACAGTGGCCACA
ATCTGGAGGCGAAGATGTCCGATGGCGAGGGCCAAGTCTCGACTATGACT
GGTGGCGTGGAGCAGGATTCGGCCGTGGCCGCTCCCCTAGAAAAAAGGTA
TGCCCCACCGCCGCCTCCTCGCTTGTACGCAGCGGCCGCACCTCGCGCTC
TGTCAAACAGGGAGTACCATCTACAGTTGGCTGGTCGACTCTACGAAATG
GAGATGAAGCGAATCCTCAGCGGGCGACAGGAGAAACTCTCTGCCATTTC
CGAGCAGTATTACAGCCATCTGCTCGAGTCCGCTTCTCCGACCCCGAGCA
GCACCTACCCTACAGCAGTGACCCCGAGCAGCACCTACCCTACAGCAGTG
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