mRNA_F-serratus_M_contig1103.971.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1103.971.1
Unique NamemRNA_F-serratus_M_contig1103.971.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1103.971.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-10
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   28 TNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDAG 153
            T V I VVS H+ Q+NTGTLRHMA RESGP  FFS CAN+AG
Sbjct:    2 TGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 43
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BLAST of mRNA_F-serratus_M_contig1103.971.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.950e-10
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 EVAVTDATNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDAG 153
            E AV   T V I VVS H+ Q+NTGTLRHMA RESGP  FFS CAN+AG
Sbjct:  445 EAAVFVMTGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAG 493
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BLAST of mRNA_F-serratus_M_contig1103.971.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.420e-8
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    7 EVAVTDATNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDAG 153
            E AV   T + I VVS  + Q NTGTLRHMA RESGP  FFS CAN+AG
Sbjct:  303 ETAVFVMTGLRIMVVSSLLGQGNTGTLRHMAWRESGPWTFFSPCANEAG 351
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1103.971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGM5_9PHAE1.030e-1071.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KX32_9PHAE1.950e-1067.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT6_9PHAE5.420e-863.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1103contigF-serratus_M_contig1103:46733..47103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.0447023-CDS-F-serratus_M_contig1103:46732..468091622928978.0447023-CDS-F-serratus_M_contig1103:46732..46809Fucus serratus maleCDSF-serratus_M_contig1103 46733..46809 +
1690962652.8632362-CDS-F-serratus_M_contig1103:46732..468091690962652.8632362-CDS-F-serratus_M_contig1103:46732..46809Fucus serratus maleCDSF-serratus_M_contig1103 46733..46809 +
1622928978.0683248-CDS-F-serratus_M_contig1103:47023..471021622928978.0683248-CDS-F-serratus_M_contig1103:47023..47102Fucus serratus maleCDSF-serratus_M_contig1103 47024..47102 +
1690962652.871102-CDS-F-serratus_M_contig1103:47023..471021690962652.871102-CDS-F-serratus_M_contig1103:47023..47102Fucus serratus maleCDSF-serratus_M_contig1103 47024..47102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1103.971.1prot_F-serratus_M_contig1103.971.1Fucus serratus malepolypeptideF-serratus_M_contig1103 46733..47102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1103.971.1

>prot_F-serratus_M_contig1103.971.1 ID=prot_F-serratus_M_contig1103.971.1|Name=mRNA_F-serratus_M_contig1103.971.1|organism=Fucus serratus male|type=polypeptide|length=52bp
TLEVAVTDATNVTIKVVSIHINQENTGTLRHMAKRESGPSMFFSHCANDA
GA
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mRNA from alignment at F-serratus_M_contig1103:46733..47103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1103.971.1 ID=mRNA_F-serratus_M_contig1103.971.1|Name=mRNA_F-serratus_M_contig1103.971.1|organism=Fucus serratus male|type=mRNA|length=371bp|location=Sequence derived from alignment at F-serratus_M_contig1103:46733..47103+ (Fucus serratus male)
ACGCTAGAGGTGGCTGTGACGGACGCAACGAACGTCACCATAAAGGTGGT
CTCAATCCATATCAACCAGGAGAACACGTGAGCCTGCAAAAACTAGTGGA
TAGTAGCGTTTGGGTGGGTGTAAAGGAACGTTTTATGCACGACTGTAATG
ATAATAGTACATTTGTAAAACGATCCGGGTGACATCAGGTCCCAGTGTCT
ATTTATAGCTCGGTCACGAACTACGTCGACGGTTTCAAACTAATGTACAC
AGTCTCGCCGCGCGCTTCTACGATCTGTCCATCTCACTCAGGGGAACTCT
ACGCCACATGGCAAAACGAGAGAGCGGACCTAGCATGTTTTTCTCCCACT
GCGCGAACGACGCAGGGGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1103:46733..47103+

>mRNA_F-serratus_M_contig1103.971.1 ID=mRNA_F-serratus_M_contig1103.971.1|Name=mRNA_F-serratus_M_contig1103.971.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig1103:46733..47103+ (Fucus serratus male)
ACGCTAGAGGTGGCTGTGACGGACGCAACGAACGTCACCATAAAGGTGGT
CTCAATCCATATCAACCAGGAGAACACACGCTAGAGGTGGCTGTGACGGA
CGCAACGAACGTCACCATAAAGGTGGTCTCAATCCATATCAACCAGGAGA
ACACGGGAACTCTACGCCACATGGCAAAACGAGAGAGCGGACCTAGCATG
TTTTTCTCCCACTGCGCGAACGACGCAGGGGCAGGGAACTCTACGCCACA
TGGCAAAACGAGAGAGCGGACCTAGCATGTTTTTCTCCCACTGCGCGAAC
GACGCAGGGGCA
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