mRNA_F-serratus_M_contig1103.970.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1103.970.1
Unique NamemRNA_F-serratus_M_contig1103.970.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1103.970.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 9.370e-23
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:  106 QGASVIQSVKLMERNACDRKTMVHDTVSICRRKGTDFSLAVVCTFARDGRSCYMHGTEEEWRKKIAAGGRERDDALSLNYFSSSAISFPLAAQLAE 393
            QGASVIQSV+L + N   R+T+V + VSICRR      L + C  ARDG  C++HGTE E + K+A GG  +++AL LNY+SS AI FPLAAQ A+
Sbjct:   10 QGASVIQSVELKDLNENGRRTVVQNLVSICRRCSEKVHLGLHCALARDGERCFLHGTENERKAKVAKGGTVKEEALRLNYYSSGAIRFPLAAQTAD 105
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1103.970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE9.370e-2354.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1103contigF-serratus_M_contig1103:43896..44821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size612
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1103.970.1prot_F-serratus_M_contig1103.970.1Fucus serratus malepolypeptideF-serratus_M_contig1103 43896..44820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928977.8265498-CDS-F-serratus_M_contig1103:43895..439571622928977.8265498-CDS-F-serratus_M_contig1103:43895..43957Fucus serratus maleCDSF-serratus_M_contig1103 43896..43957 +
1690962652.8361983-CDS-F-serratus_M_contig1103:43895..439571690962652.8361983-CDS-F-serratus_M_contig1103:43895..43957Fucus serratus maleCDSF-serratus_M_contig1103 43896..43957 +
1622928977.8653681-CDS-F-serratus_M_contig1103:44094..445721622928977.8653681-CDS-F-serratus_M_contig1103:44094..44572Fucus serratus maleCDSF-serratus_M_contig1103 44095..44572 +
1690962652.8438249-CDS-F-serratus_M_contig1103:44094..445721690962652.8438249-CDS-F-serratus_M_contig1103:44094..44572Fucus serratus maleCDSF-serratus_M_contig1103 44095..44572 +
1622928977.9915547-CDS-F-serratus_M_contig1103:44751..448201622928977.9915547-CDS-F-serratus_M_contig1103:44751..44820Fucus serratus maleCDSF-serratus_M_contig1103 44752..44820 +
1690962652.8513126-CDS-F-serratus_M_contig1103:44751..448201690962652.8513126-CDS-F-serratus_M_contig1103:44751..44820Fucus serratus maleCDSF-serratus_M_contig1103 44752..44820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1103.970.1

>prot_F-serratus_M_contig1103.970.1 ID=prot_F-serratus_M_contig1103.970.1|Name=mRNA_F-serratus_M_contig1103.970.1|organism=Fucus serratus male|type=polypeptide|length=203bp
AKTGNLNGSLRESLSGSQRWRCPSMRLLRHRNGRAQGASVIQSVKLMERN
ACDRKTMVHDTVSICRRKGTDFSLAVVCTFARDGRSCYMHGTEEEWRKKI
AAGGRERDDALSLNYFSSSAISFPLAAQLAEGIGAKIICLQTLLEGFMVT
RVSHNQDAHIDNIYRAFFNANECYGRGHIQKNMKKNVGKCAKGNGDRVSR
NFN
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mRNA from alignment at F-serratus_M_contig1103:43896..44821+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1103.970.1 ID=mRNA_F-serratus_M_contig1103.970.1|Name=mRNA_F-serratus_M_contig1103.970.1|organism=Fucus serratus male|type=mRNA|length=926bp|location=Sequence derived from alignment at F-serratus_M_contig1103:43896..44821+ (Fucus serratus male)
GCGAAGACTGGAAACCTAAACGGGAGTTTGAGGGAGAGTTTGTCTGGCTC
ACAGCGTTGGAGGTGAGTTGACACGTACAGGTTAGATGGTGTAAGAACGC
CATACCAGGGTTTCCATTGCCTTTTCCCACACCAGTATTATTTTTAATCT
TCCGAAGGAAACTATTAATTGTATGCCGAACATTGCACTGCCGTATCAGG
TGTCCATCGATGCGTCTTTTGCGGCACAGAAACGGTAGAGCGCAGGGAGC
CAGTGTCATCCAGTCAGTCAAGCTAATGGAGCGAAATGCCTGCGACCGCA
AAACAATGGTCCATGATACGGTCAGCATTTGCCGGCGTAAGGGCACCGAT
TTCTCGCTCGCCGTGGTGTGCACATTCGCGCGGGACGGAAGGAGTTGCTA
CATGCACGGGACTGAAGAAGAGTGGCGAAAGAAGATTGCAGCGGGAGGCC
GCGAGCGGGACGACGCTTTGTCACTAAACTACTTCTCCAGCTCTGCTATT
TCGTTCCCTCTCGCGGCCCAGCTGGCAGAGGGCATTGGAGCGAAGATCAT
TTGCTTACAAACACTGCTCGAGGGGTTCATGGTAACAAGGGTCTCTCATA
ATCAAGATGCTCATATCGACAATATCTACAGAGCTTTCTTCAACGCGAAC
GAGTGCTATGGTCGTGGGCATATTCAGGTCGGTGGTGGACTTATGTACCA
GGTATACCGTAAACGCGCTTGTTCAATGTTATCAGAACCTCTCTTTTTTT
GCGGTAATCATAAGTTTTCGTTTTGTAACCTAATTGTACGCTCACACGCC
TCCCTCGTGGCGTGTCCTTCTATTTACACACTTTCCTTTTGTCCTCTTCA
CGGCAGAAAAATATGAAGAAGAACGTCGGGAAATGCGCGAAAGGGAACGG
TGATCGAGTCAGCCGCAACTTCAACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1103:43896..44821+

>mRNA_F-serratus_M_contig1103.970.1 ID=mRNA_F-serratus_M_contig1103.970.1|Name=mRNA_F-serratus_M_contig1103.970.1|organism=Fucus serratus male|type=CDS|length=1218bp|location=Sequence derived from alignment at F-serratus_M_contig1103:43896..44821+ (Fucus serratus male)
GCGAAGACTGGAAACCTAAACGGGAGTTTGAGGGAGAGTTTGTCTGGCTC
ACAGCGTTGGAGGCGAAGACTGGAAACCTAAACGGGAGTTTGAGGGAGAG
TTTGTCTGGCTCACAGCGTTGGAGGTGTCCATCGATGCGTCTTTTGCGGC
ACAGAAACGGTAGAGCGCAGGGAGCCAGTGTCATCCAGTCAGTCAAGCTA
ATGGAGCGAAATGCCTGCGACCGCAAAACAATGGTCCATGATACGGTCAG
CATTTGCCGGCGTAAGGGCACCGATTTCTCGCTCGCCGTGGTGTGCACAT
TCGCGCGGGACGGAAGGAGTTGCTACATGCACGGGACTGAAGAAGAGTGG
CGAAAGAAGATTGCAGCGGGAGGCCGCGAGCGGGACGACGCTTTGTCACT
AAACTACTTCTCCAGCTCTGCTATTTCGTTCCCTCTCGCGGCCCAGCTGG
CAGAGGGCATTGGAGCGAAGATCATTTGCTTACAAACACTGCTCGAGGGG
TTCATGGTAACAAGGGTCTCTCATAATCAAGATGCTCATATCGACAATAT
CTACAGAGCTTTCTTCAACGCGAACGAGTGCTATGGTCGTGGGCATATTC
AGGTGTCCATCGATGCGTCTTTTGCGGCACAGAAACGGTAGAGCGCAGGG
AGCCAGTGTCATCCAGTCAGTCAAGCTAATGGAGCGAAATGCCTGCGACC
GCAAAACAATGGTCCATGATACGGTCAGCATTTGCCGGCGTAAGGGCACC
GATTTCTCGCTCGCCGTGGTGTGCACATTCGCGCGGGACGGAAGGAGTTG
CTACATGCACGGGACTGAAGAAGAGTGGCGAAAGAAGATTGCAGCGGGAG
GCCGCGAGCGGGACGACGCTTTGTCACTAAACTACTTCTCCAGCTCTGCT
ATTTCGTTCCCTCTCGCGGCCCAGCTGGCAGAGGGCATTGGAGCGAAGAT
CATTTGCTTACAAACACTGCTCGAGGGGTTCATGGTAACAAGGGTCTCTC
ATAATCAAGATGCTCATATCGACAATATCTACAGAGCTTTCTTCAACGCG
AACGAGTGCTATGGTCGTGGGCATATTCAGAAAAATATGAAGAAGAACGT
CGGGAAATGCGCGAAAGGGAACGGTGATCGAGTCAGCCGCAACTTCAACA
AAAATATGAAGAAGAACGTCGGGAAATGCGCGAAAGGGAACGGTGATCGA
GTCAGCCGCAACTTCAAC
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