mRNA_F-serratus_M_contig1103.969.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1103.969.1
Unique NamemRNA_F-serratus_M_contig1103.969.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1103.969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1103contigF-serratus_M_contig1103:43286..43873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.810158-CDS-F-serratus_M_contig1103:43285..436691622928972.810158-CDS-F-serratus_M_contig1103:43285..43669Fucus serratus maleCDSF-serratus_M_contig1103 43286..43669 +
1690962652.8142176-CDS-F-serratus_M_contig1103:43285..436691690962652.8142176-CDS-F-serratus_M_contig1103:43285..43669Fucus serratus maleCDSF-serratus_M_contig1103 43286..43669 +
1622928972.8201523-CDS-F-serratus_M_contig1103:43813..438731622928972.8201523-CDS-F-serratus_M_contig1103:43813..43873Fucus serratus maleCDSF-serratus_M_contig1103 43814..43873 +
1690962652.8277268-CDS-F-serratus_M_contig1103:43813..438731690962652.8277268-CDS-F-serratus_M_contig1103:43813..43873Fucus serratus maleCDSF-serratus_M_contig1103 43814..43873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1103.969.1prot_F-serratus_M_contig1103.969.1Fucus serratus malepolypeptideF-serratus_M_contig1103 43286..43873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1103.969.1

>prot_F-serratus_M_contig1103.969.1 ID=prot_F-serratus_M_contig1103.969.1|Name=mRNA_F-serratus_M_contig1103.969.1|organism=Fucus serratus male|type=polypeptide|length=148bp
GASTERTDGLHWACVCLRCGADFGRMRIRGQNALATVLGVLLAGSTYQHY
SASCVFSDVLALSGTAIYNTQAKILRLVDRVFDEHIQRQRECLREDPKRR
IKVRKNHIYFIRNADKLYELMDTPFGLKPGEGRGENLTEMEVAVNLLR
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mRNA from alignment at F-serratus_M_contig1103:43286..43873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1103.969.1 ID=mRNA_F-serratus_M_contig1103.969.1|Name=mRNA_F-serratus_M_contig1103.969.1|organism=Fucus serratus male|type=mRNA|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1103:43286..43873+ (Fucus serratus male)
GGAGCATCGACAGAGCGGACTGATGGTTTGCATTGGGCATGTGTGTGCTT
GCGCTGTGGTGCCGACTTTGGACGGATGAGAATTAGGGGACAAAACGCGC
TGGCAACTGTTCTCGGTGTTCTCTTAGCAGGGAGCACATACCAGCACTAC
TCGGCGTCGTGTGTTTTTTCGGACGTACTGGCTCTGTCAGGCACTGCGAT
CTATAACACACAGGCTAAAATTCTGCGGCTGGTAGACCGTGTATTTGACG
AACACATTCAGCGCCAAAGGGAGTGTTTACGTGAGGATCCGAAACGGCGG
ATCAAAGTGCGGAAGAACCACATATACTTCATCCGGAATGCGGATAAACT
TTACGAGCTCATGGACACGCCGTTCGGATTGAAGGTGAGAAGCATGCTGT
ACATTCTAGTCAGCTGGTGTGTGTAGGTTGACCACTGTTTTTTTCACAAC
GTAGAGCGAGGCGTATTTATCGGCATAAACTTAAATCTCGCTGCCGTTCG
TCTGTGTGATCCGTCGTTGCTTCGCGAGCCGGGGGAAGGGCGTGGGGAAA
ACCTGACTGAGATGGAAGTAGCGGTAAACCTCCTTCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1103:43286..43873+

>mRNA_F-serratus_M_contig1103.969.1 ID=mRNA_F-serratus_M_contig1103.969.1|Name=mRNA_F-serratus_M_contig1103.969.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig1103:43286..43873+ (Fucus serratus male)
GGAGCATCGACAGAGCGGACTGATGGTTTGCATTGGGCATGTGTGTGCTT
GCGCTGTGGTGCCGACTTTGGACGGATGAGAATTAGGGGACAAAACGCGC
TGGCAACTGTTCTCGGTGTTCTCTTAGCAGGGAGCACATACCAGCACTAC
TCGGCGTCGTGTGTTTTTTCGGACGTACTGGCTCTGTCAGGCACTGCGAT
CTATAACACACAGGCTAAAATTCTGCGGCTGGTAGACCGTGTATTTGACG
AACACATTCAGCGCCAAAGGGAGTGTTTACGTGAGGATCCGAAACGGCGG
ATCAAAGTGCGGAAGAACCACATATACTTCATCCGGAATGCGGATAAACT
TTACGAGCTCATGGACACGCCGTTCGGATTGAAGGGAGCATCGACAGAGC
GGACTGATGGTTTGCATTGGGCATGTGTGTGCTTGCGCTGTGGTGCCGAC
TTTGGACGGATGAGAATTAGGGGACAAAACGCGCTGGCAACTGTTCTCGG
TGTTCTCTTAGCAGGGAGCACATACCAGCACTACTCGGCGTCGTGTGTTT
TTTCGGACGTACTGGCTCTGTCAGGCACTGCGATCTATAACACACAGGCT
AAAATTCTGCGGCTGGTAGACCGTGTATTTGACGAACACATTCAGCGCCA
AAGGGAGTGTTTACGTGAGGATCCGAAACGGCGGATCAAAGTGCGGAAGA
ACCACATATACTTCATCCGGAATGCGGATAAACTTTACGAGCTCATGGAC
ACGCCGTTCGGATTGAAGCCGGGGGAAGGGCGTGGGGAAAACCTGACTGA
GATGGAAGTAGCGGTAAACCTCCTTCGGCCGGGGGAAGGGCGTGGGGAAA
ACCTGACTGAGATGGAAGTAGCGGTAAACCTCCTTCGG
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