mRNA_F-serratus_M_contig11.928.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.928.1
Unique NamemRNA_F-serratus_M_contig11.928.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:1089232..1089778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.130256-CDS-F-serratus_M_contig11:1089231..10894541622928960.130256-CDS-F-serratus_M_contig11:1089231..1089454Fucus serratus maleCDSF-serratus_M_contig11 1089232..1089454 -
1690962646.8758156-CDS-F-serratus_M_contig11:1089231..10894541690962646.8758156-CDS-F-serratus_M_contig11:1089231..1089454Fucus serratus maleCDSF-serratus_M_contig11 1089232..1089454 -
1622928960.1497853-CDS-F-serratus_M_contig11:1089665..10897781622928960.1497853-CDS-F-serratus_M_contig11:1089665..1089778Fucus serratus maleCDSF-serratus_M_contig11 1089666..1089778 -
1690962646.8859913-CDS-F-serratus_M_contig11:1089665..10897781690962646.8859913-CDS-F-serratus_M_contig11:1089665..1089778Fucus serratus maleCDSF-serratus_M_contig11 1089666..1089778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.928.1prot_F-serratus_M_contig11.928.1Fucus serratus malepolypeptideF-serratus_M_contig11 1089232..1089778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.928.1

>prot_F-serratus_M_contig11.928.1 ID=prot_F-serratus_M_contig11.928.1|Name=mRNA_F-serratus_M_contig11.928.1|organism=Fucus serratus male|type=polypeptide|length=112bp
VSVWASSLSRGRGPGRGKREVTEAVEVGPASSARSTMRLGDAGASCATPA
PRRCHFLRRRGPTVLTMEKLVVVEFVLLLTQTRRRRMAFFRPKEEGNEEK
EDLTLRSLERGT
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mRNA from alignment at F-serratus_M_contig11:1089232..1089778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.928.1 ID=mRNA_F-serratus_M_contig11.928.1|Name=mRNA_F-serratus_M_contig11.928.1|organism=Fucus serratus male|type=mRNA|length=547bp|location=Sequence derived from alignment at F-serratus_M_contig11:1089232..1089778- (Fucus serratus male)
GTGTCGGTGTGGGCGTCTTCACTAAGTCGAGGGCGCGGACCCGGCAGGGG
AAAGAGGGAGGTGACGGAAGCAGTGGAAGTTGGACCTGCGAGCAGTGCAC
GTTCGACAATGAGGTGAGTGCATGGTAATATTAATATCACGATTGTGTTG
ACAGGGCTGTGGTATCTAGGTACGTTGGTGTAATGTACTTGTTTAGGTAG
ATATGTAGGTAGCTCTGTGGCCAAATGAGGCTACTGCATCGAAGTGTAGT
TGGTCAACAGGGATGTTTAATGGATGATGGCCCGTATTCCTTTAACCCCA
CCCCCATCCTTTCGACTGAAAAAGGCTAGGAGACGCCGGTGCTTCATGTG
CAACTCCTGCCCCCCGGAGGTGCCACTTCCTTCGAAGGCGAGGACCAACA
GTGCTGACGATGGAGAAGCTGGTGGTGGTAGAGTTTGTGCTGCTCCTTAC
GCAGACTCGGCGAAGAAGGATGGCCTTCTTTCGGCCGAAGGAGGAGGGGA
ACGAAGAAAAGGAGGATCTAACGCTGCGGTCGCTGGAAAGAGGGACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:1089232..1089778-

>mRNA_F-serratus_M_contig11.928.1 ID=mRNA_F-serratus_M_contig11.928.1|Name=mRNA_F-serratus_M_contig11.928.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig11:1089232..1089778- (Fucus serratus male)
GTGTCGGTGTGGGCGTCTTCACTAAGTCGAGGGCGCGGACCCGGCAGGGG
AAAGAGGGAGGTGACGGAAGCAGTGGAAGTTGGACCTGCGAGCAGTGCAC
GTTCGACAATGAGGTGTCGGTGTGGGCGTCTTCACTAAGTCGAGGGCGCG
GACCCGGCAGGGGAAAGAGGGAGGTGACGGAAGCAGTGGAAGTTGGACCT
GCGAGCAGTGCACGTTCGACAATGAGGCTAGGAGACGCCGGTGCTTCATG
TGCAACTCCTGCCCCCCGGAGGTGCCACTTCCTTCGAAGGCGAGGACCAA
CAGTGCTGACGATGGAGAAGCTGGTGGTGGTAGAGTTTGTGCTGCTCCTT
ACGCAGACTCGGCGAAGAAGGATGGCCTTCTTTCGGCCGAAGGAGGAGGG
GAACGAAGAAAAGGAGGATCTAACGCTGCGGTCGCTGGAAAGAGGGACGG
CTAGGAGACGCCGGTGCTTCATGTGCAACTCCTGCCCCCCGGAGGTGCCA
CTTCCTTCGAAGGCGAGGACCAACAGTGCTGACGATGGAGAAGCTGGTGG
TGGTAGAGTTTGTGCTGCTCCTTACGCAGACTCGGCGAAGAAGGATGGCC
TTCTTTCGGCCGAAGGAGGAGGGGAACGAAGAAAAGGAGGATCTAACGCT
GCGGTCGCTGGAAAGAGGGACG
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