mRNA_F-serratus_M_contig11.920.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 197 bits (502), Expect = 1.600e-53 Identity = 124/302 (41.06%), Postives = 174/302 (57.62%), Query Frame = 1
Query: 7 VRSKARAAARSKELMVATWNIRTMPERGTNGPGH-AEDLLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHRRR 885
V++ A+ AR +L T+N+RT+ G N GH ++ A +CD I +QETRR G+ I GYV+ SG G K G GVG+A++E++ ++G G E IS L+KVR+ TF+VGYAPTE A + K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL AA+ ++S++NT+F PK G + KE HR LD+IL+RQ DRRLVRN +V SDH LV ++R R APN R R
Sbjct: 77 VKATAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTR 372
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 192 bits (488), Expect = 3.070e-53 Identity = 118/300 (39.33%), Postives = 173/300 (57.67%), Query Frame = 1
Query: 7 VRSKARAAARSKELMVATWNIRTMPERGTNGPGH-AEDLLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAAICH------KSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHR 879
V++ A+ AR +L T+N+RT+ G N GH ++ + CD I +QETRR G+ +I GYV+ SG G K G GVG+A++E++ ++G +G E IS L+KVR+ TF+VGYAPTE K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL A++ ++S+ NT+F PK G + KE ++RLD+I +RQ DRR VRN++V SDH+LV ++RL R APN R
Sbjct: 162 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRLPPRVAPNRR 455
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 187 bits (476), Expect = 1.520e-52 Identity = 116/300 (38.67%), Postives = 171/300 (57.00%), Query Frame = 1
Query: 7 VRSKARAAARSKELMVATWNIRTMPERGTNGPGH-AEDLLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHR 879
V++ A+ AR +L T+N+RT+ G N GH ++ + CD I +QETRR G+ +I GYV+ SG G K G GVG+ ++E++ ++G +G E I L+KVR+ F+VGYAPTE + K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL A++ ++S+ NT+F PK G + KE ++RLD+IL+RQ DRR VRN++V SDH LV ++RL R APN R
Sbjct: 68 VKAAAKRKAREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 361
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 193 bits (491), Expect = 2.290e-52 Identity = 119/300 (39.67%), Postives = 174/300 (58.00%), Query Frame = 1
Query: 7 VRSKARAAARSKELMVATWNIRTMPERGTNGPGH-AEDLLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAAICH------KSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHR 879
V++ A+ AR +L T+++RT+ G N GH ++ ++ CD I +QETRR+G+ +I GYV+ SG G K G GVG+A++E++ +G +G E IS L+KVR+ TF+VGYAPTE I K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL A++ ++S+ NT+F PK G KE ++RLD+IL+RQ DRR VRN++V SDH LV ++RL R APN R
Sbjct: 142 VKAAAKKKAREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQCSNKGKE--KYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNRR 435
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 187 bits (474), Expect = 8.000e-50 Identity = 115/292 (39.38%), Postives = 168/292 (57.53%), Query Frame = 1
Query: 31 ARSKELMVATWNIRTMPERGTNGPGH-AEDLLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHR 879
AR +L T+N+ T+ G N GH ++ + CD I +QETRR+G+ +I GYV+ SG G K G GVG+A++E++ ++G +G E IS L+KVR+ TF+V YAPTE + K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL A++ ++S+ NT+F PK G + KE ++RLD+IL+RQ DRR VRN++V SDH LV ++RL R APN R
Sbjct: 652 AREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 937
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 184 bits (466), Expect = 8.780e-50 Identity = 115/300 (38.33%), Postives = 170/300 (56.67%), Query Frame = 1
Query: 7 VRSKARAAARSKELMVATWNIRTMPERGTNGPGH-AEDLLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVH--PKMKSDHRLVSASIRLLGRNAPNHR 879
V++ A+ AR +L T+N+RT+ G N GH ++ + CD I +QETRR G+ +I GYV+ SG G K G GVG+A++E++ ++G +G E IS L+KVR+ TF+VGYAPTE + K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL A++ ++S+ NT+ PK G + KE ++RLD IL+RQ DRR VRN++V DH LV ++R R AP+ R
Sbjct: 73 VKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPKGGVQHTFQSSNKGKE--KYRLDLILMRQTDRRFVRNVSVKCVDFKDPDHNLVLTTVRRPPRVAPHRR 366
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 175 bits (443), Expect = 6.850e-49 Identity = 107/262 (40.84%), Postives = 152/262 (58.02%), Query Frame = 1
Query: 118 LLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHR 879
++ + CD I +QETRR+G+ +I GYV+ SG G K G GVG+A++E++ ++G +G E IS L+KVR+ TF+VGYAPTE + K FW L + + EV + +HLV++MDANARTG R G D +VLG YG++ +N+NG RL A++ + S+ NT+F PK G + KE ++RLD+IL+RQ DRR VRN++V SDH LV ++RL R APN R
Sbjct: 3 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGG--CCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 258
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.080e-47 Identity = 104/262 (39.69%), Postives = 152/262 (58.02%), Query Frame = 1
Query: 118 LLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHR 879
++ + CD I +QETRR+G+ ++ GYV+ SG G K G GVG+A++E++ ++G G E I+ L+KVR+ TF+VGYAPTE + K FW L + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL A+ ++S+ NT+F PK G + KE ++RLD+IL+RQ DRR VRN++V SDH LV ++RL R APN R
Sbjct: 3 VMQLCSATGCDVIGLQETRREGQGSLAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 258
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.180e-47 Identity = 111/264 (42.05%), Postives = 154/264 (58.33%), Query Frame = 1
Query: 118 LLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHRRR 885
++ A +CD I +QETRR G+ I GYV+ SG G K G GVG+A++E++ ++G G E IS L+KVR+ TF+VGYAPTE A + K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL AA+ ++S++NT+F PK G + KE HR LD+IL+RQ DRRLVRN +V SDH LV ++R R APN R R
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTR 260
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 173 bits (438), Expect = 7.030e-47 Identity = 103/262 (39.31%), Postives = 154/262 (58.78%), Query Frame = 1
Query: 118 LLMFTAKHECDFIAIQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGKPGTLGVGLAVRESIVRALGPDGIVPEHISAWLLKVRVIFKHRTTTTFIVGYAPTEAAA------ICHKSKFWNELRSTVAEVAASEHLVLMMDANARTGGRGEGGRLRDVRVLGPYGKNTLNDNGSRLLACAAEYKVSIVNTFFSKPKRGESSDAFTYEGPKEFHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNHR 879
++ + CD +QETRR+G+ +I GYV+ SG G K G GVG+A++E++ ++G +G E IS L+KVR+ TF++GYAPTE + K FW L + + EV + +HLV++MDANARTG R +G D +++G YG++ +N+NG RLL A++ ++S+ NT+F PK G + KE ++RLD+IL+RQ DRR VR+++V SDH LV ++RL R APN R
Sbjct: 3 VMQICSATGCDVTGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKE--KYRLDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 258 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig11.920.1 >prot_F-serratus_M_contig11.920.1 ID=prot_F-serratus_M_contig11.920.1|Name=mRNA_F-serratus_M_contig11.920.1|organism=Fucus serratus male|type=polypeptide|length=296bp RVVRSKARAAARSKELMVATWNIRTMPERGTNGPGHAEDLLMFTAKHECDback to top mRNA from alignment at F-serratus_M_contig11:833827..834714+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig11.920.1 ID=mRNA_F-serratus_M_contig11.920.1|Name=mRNA_F-serratus_M_contig11.920.1|organism=Fucus serratus male|type=mRNA|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig11:833827..834714+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig11:833827..834714+ >mRNA_F-serratus_M_contig11.920.1 ID=mRNA_F-serratus_M_contig11.920.1|Name=mRNA_F-serratus_M_contig11.920.1|organism=Fucus serratus male|type=CDS|length=1776bp|location=Sequence derived from alignment at F-serratus_M_contig11:833827..834714+ (Fucus serratus male)back to top |