mRNA_F-serratus_M_contig11.918.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.918.1
Unique NamemRNA_F-serratus_M_contig11.918.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig11.918.1 vs. uniprot
Match: A0A6H5L1R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.500e-6
Identity = 34/45 (75.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:  868 EESALEARVAEAERRLRELQDKAKRRRRDKRELAALHRALARQES 1002
            EE+ LEARVA+AERRLR LQ++A++RRRDKRELAALH+ALA+QE+
Sbjct:  334 EEADLEARVAKAERRLRALQERARQRRRDKRELAALHQALAKQEA 378
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BLAST of mRNA_F-serratus_M_contig11.918.1 vs. uniprot
Match: D7G1G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.420e-5
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:  868 EESALEARVAEAERRLRELQDKAKRRRRDKRELAALHRALARQES 1002
            EE+ LEARVA+AERRLR LQ++A++R RDKRELAALH+ALA QE+
Sbjct: 1164 EEADLEARVAKAERRLRALQERARQRHRDKRELAALHQALAEQEA 1208
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1R8_9PHAE3.500e-675.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1G4_ECTSI3.420e-573.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:739910..742693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1026
Cds size1023
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.918.1prot_F-serratus_M_contig11.918.1Fucus serratus malepolypeptideF-serratus_M_contig11 739910..742691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928959.8089423-CDS-F-serratus_M_contig11:739909..7407221622928959.8089423-CDS-F-serratus_M_contig11:739909..740722Fucus serratus maleCDSF-serratus_M_contig11 739910..740722 +
1690962646.7617073-CDS-F-serratus_M_contig11:739909..7407221690962646.7617073-CDS-F-serratus_M_contig11:739909..740722Fucus serratus maleCDSF-serratus_M_contig11 739910..740722 +
1622928959.822616-CDS-F-serratus_M_contig11:741305..7413771622928959.822616-CDS-F-serratus_M_contig11:741305..741377Fucus serratus maleCDSF-serratus_M_contig11 741306..741377 +
1690962646.7718341-CDS-F-serratus_M_contig11:741305..7413771690962646.7718341-CDS-F-serratus_M_contig11:741305..741377Fucus serratus maleCDSF-serratus_M_contig11 741306..741377 +
1622928959.8392136-CDS-F-serratus_M_contig11:742553..7426911622928959.8392136-CDS-F-serratus_M_contig11:742553..742691Fucus serratus maleCDSF-serratus_M_contig11 742554..742691 +
1690962646.7824032-CDS-F-serratus_M_contig11:742553..7426911690962646.7824032-CDS-F-serratus_M_contig11:742553..742691Fucus serratus maleCDSF-serratus_M_contig11 742554..742691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.918.1

>prot_F-serratus_M_contig11.918.1 ID=prot_F-serratus_M_contig11.918.1|Name=mRNA_F-serratus_M_contig11.918.1|organism=Fucus serratus male|type=polypeptide|length=341bp
GTRVGGGLSGGGGAGIRADLQRSDGHAHVDDPGPAAAGVALLLPSDIGDG
HDRVERDPESVRPRSNITNTVGVRRSCASRLQGSNPITPGEVGEAAKPPR
EAGVDSTLRESFPPGRMEPMTAHRCQDNAPAAVDRGSSDGDPAVFTIVSG
GRDDNDSTINPGADSPDAFPRPAPALAPAPESGKSIRGDDTVGVRDHFPL
RREGVAPSSGGRGKAVRIRVCKGGEGIDADGDRVRSGSGWGYGKKDVGGT
RVGDAAHELRTGEARGCFKGERTSRSSQRFPPENLDVPEEESALEARVAE
AERRLRELQDKAKRRRRDKRELAALHRALARQESPGSRSTS
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mRNA from alignment at F-serratus_M_contig11:739910..742693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.918.1 ID=mRNA_F-serratus_M_contig11.918.1|Name=mRNA_F-serratus_M_contig11.918.1|organism=Fucus serratus male|type=mRNA|length=2784bp|location=Sequence derived from alignment at F-serratus_M_contig11:739910..742693+ (Fucus serratus male)
GGCACCAGAGTGGGAGGGGGTCTCAGTGGCGGCGGCGGTGCAGGGATCCG
AGCCGATCTGCAGAGATCGGACGGCCACGCGCACGTTGACGATCCCGGCC
CTGCCGCCGCCGGGGTTGCGCTTTTGCTGCCCTCGGATATTGGAGATGGA
CACGATCGTGTCGAGCGCGATCCTGAGTCCGTCCGCCCACGCTCAAACAT
TACTAATACTGTCGGTGTTAGGCGAAGCTGCGCCTCGCGCCTGCAAGGGT
CTAACCCGATTACTCCGGGCGAGGTAGGGGAGGCAGCTAAGCCGCCGCGA
GAGGCGGGAGTAGACAGCACACTGCGGGAATCTTTTCCACCAGGGCGGAT
GGAGCCGATGACCGCGCATCGTTGCCAAGACAACGCACCTGCAGCGGTAG
ACCGTGGATCTTCCGACGGAGATCCCGCCGTTTTTACGATTGTATCTGGT
GGGAGGGATGATAATGATAGTACCATCAACCCCGGCGCGGATTCTCCAGA
CGCGTTTCCCAGACCCGCGCCTGCACTTGCGCCTGCACCCGAGAGCGGTA
AATCCATCCGTGGCGACGACACCGTCGGCGTTCGGGACCATTTTCCCCTG
AGACGGGAAGGCGTTGCCCCGTCATCGGGAGGCAGGGGAAAGGCGGTGCG
CATCCGCGTTTGTAAGGGGGGTGAGGGAATCGATGCTGACGGAGACAGAG
TGCGTTCGGGGTCGGGATGGGGTTACGGAAAGAAGGATGTCGGCGGCACG
CGGGTTGGAGATGCGGCTCACGAACTTCGGACGGGCGAAGCGCGAGGCTG
TTTCAAGGGAGAGGTGAGGGAAATGGCACGCACCTCTTGGCTTCGTTCAG
TGGAAGGGAGAGAGGGGGGAGGGGTTGATTACTTCGTCAAAATAGCCCTT
TCAGAGATCACGCTACTACCCGAACCCTGGCCTAGAATACTATCAACAGG
ACGCCTCAAACGGGATCCTAACGGGAGGATAGTTCTCAAGTTTTACCCAT
GAAGAGGTTCCCCGCCTCCGTCCCCCCACCTCCTTTTTTCGTGACTAGAT
GTTTAGATGGGGTTTCTAATGAGTGGTTGCGAGAGTCGACACCCGCCGTC
GGGGCGGAAGGAGAGAGCGCCGTGGACATAAGACAACGAAGCGTGTGGTG
AAATACATGCGGTACGCTAACCTAGAGCCGATTCGCGTGCCTGTTAAGCT
TGACATACTGAACGCTCCCTCGTGGATGCACAATCTCGAGGGCTGACGCG
ATAATCGTTCGGTGGCGCCGTCTGTGACCCCATCTGGCCCCCTTTGACAC
CACCATAGGGTCTTATCGTGACGTCATTCGCCCGCGTTGTTGTGTCCCCT
CATTTTGTTTTTAATTCTACGATCGTGACTCCTGACCGTCACCAAGAGAA
CGTCGCGATCGTCGCAGCGGTTTCCCCCCGAAAACCTCGATGTCCCGGAA
GAAGAGAGTGCCCTCGAGGTGAGGAAAAGGAGATATGGTAACCCCCCCCC
CCCCAAATGCGGACGTTCAAGCTCATCAAGGTGTTTGAGTAGCGCGCGCC
GCGTAGCTCCTGAGCTATGCGCCTGGTCATCAATATTTTCGTTGTGCGAG
GCTCACTGGAGAGAGCTTCGAAGCAGCTCGTCCTCGCGAGGATCGCCATC
CCCAAAGAAAACAAGTCAAGCGCTTCGTGGCAGAGTTCGGAATAAAAAAA
GTGTTGGAAGAAGAGAGCTGCGGCGTTTCCGAGGCAAATACCCTTTCGCG
CCTCACTGTTCGACCCCCCCCGCCCCCTCTCGAATGGTGTGGGTGAAGTG
GTGGGCTGATGATGCTTACGTCCATTAGGCTCTACAGCGACGCTTTGCCA
TAACCCGTGTGCACGGAAACCATACACAAGCTGCTGAACGAGGCGAGTCG
CTCGAGCCGGGAATGGAATCGCATTTTAGACGATCCTGTCGATCGCTCAT
CGTAGGTCCGCCTATCCGACCTTTTTTATCCGCCCCCCCTTCCCCGCCCT
TCCCCCCCCCCCAACTCCCTCTTTCTGTATTCTCCTGCGGAGAATTCTCT
GTCGCTGTGGTCAAGTCTGACCCTTGCAAGAAACCTTTGCGTTCGGTGCT
AACTTTCTGCCGTTGGTGGCGACAATGAGCGTGCCGGGTGACCAATGCCA
AGTACTAAACGCAGCGTTGCCCGTCCCGCCTACTGTAGCTGTGGTCTTAC
AACAAAGGGATTTACGGAATCTCTCCCCGGTTCACGCCTACATGATTTGG
CGATGCGAGTTCACCGCTCCTGCCATAACGTACATCGGCGCGTACGTAGA
CATGCAGGTGGTCAAACAGTTGGACTCTTACAAGAAAGAGGTCTCACTGT
TTAAAAGTCATTTTTGACAAGAGTCATTTTCTTGACCCGATCCCATCATA
CAAAAGAGTTTTTCCCGCTTCGGAACCCTGAACATAATCCCCCCCCGGTA
TATTTTAGCACCAGATGTGAGTCGATGTCGCCACTTTCGAACTTGTTGGG
TTGCTCCGTGGCTACTTACCATCCTAAAAGATAAAAATGAGAATAAGCTC
CATATCAACGAAGAAATACGTTTTGCTGTAACGATCTTGGAACCACCCCC
CACCCCCCCGTTTCCTCGTCCCGTCTTGGCGCGAGTCGACCCAGGCGCGG
GTCGCCGAGGCGGAGAGGCGCTTGCGGGAGTTGCAAGATAAGGCCAAGAG
GCGTCGGCGAGACAAGCGCGAGCTCGCCGCTCTCCATCGGGCGCTGGCTC
GCCAAGAGTCGCCTGGCTCGCGATCCACGTCCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:739910..742693+

>mRNA_F-serratus_M_contig11.918.1 ID=mRNA_F-serratus_M_contig11.918.1|Name=mRNA_F-serratus_M_contig11.918.1|organism=Fucus serratus male|type=CDS|length=2046bp|location=Sequence derived from alignment at F-serratus_M_contig11:739910..742693+ (Fucus serratus male)
GGCACCAGAGTGGGAGGGGGTCTCAGTGGCGGCGGCGGTGCAGGGATCCG
AGCCGATCTGCAGAGATCGGACGGCCACGCGCACGTTGACGATCCCGGCC
CTGCCGCCGCCGGGGTTGCGCTTTTGCTGCCCTCGGATATTGGAGATGGA
CACGATCGTGTCGAGCGCGATCCTGAGTCCGTCCGCCCACGCTCAAACAT
TACTAATACTGTCGGTGTTAGGCGAAGCTGCGCCTCGCGCCTGCAAGGGT
CTAACCCGATTACTCCGGGCGAGGTAGGGGAGGCAGCTAAGCCGCCGCGA
GAGGCGGGAGTAGACAGCACACTGCGGGAATCTTTTCCACCAGGGCGGAT
GGAGCCGATGACCGCGCATCGTTGCCAAGACAACGCACCTGCAGCGGTAG
ACCGTGGATCTTCCGACGGAGATCCCGCCGTTTTTACGATTGTATCTGGT
GGGAGGGATGATAATGATAGTACCATCAACCCCGGCGCGGATTCTCCAGA
CGCGTTTCCCAGACCCGCGCCTGCACTTGCGCCTGCACCCGAGAGCGGTA
AATCCATCCGTGGCGACGACACCGTCGGCGTTCGGGACCATTTTCCCCTG
AGACGGGAAGGCGTTGCCCCGTCATCGGGAGGCAGGGGAAAGGCGGTGCG
CATCCGCGTTTGTAAGGGGGGTGAGGGAATCGATGCTGACGGAGACAGAG
TGCGTTCGGGGTCGGGATGGGGTTACGGAAAGAAGGATGTCGGCGGCACG
CGGGTTGGAGATGCGGCTCACGAACTTCGGACGGGCGAAGCGCGAGGCTG
TTTCAAGGGAGAGGGCACCAGAGTGGGAGGGGGTCTCAGTGGCGGCGGCG
GTGCAGGGATCCGAGCCGATCTGCAGAGATCGGACGGCCACGCGCACGTT
GACGATCCCGGCCCTGCCGCCGCCGGGGTTGCGCTTTTGCTGCCCTCGGA
TATTGGAGATGGACACGATCGTGTCGAGCGCGATCCTGAGTCCGTCCGCC
CACGCTCAAACATTACTAATACTGTCGGTGTTAGGCGAAGCTGCGCCTCG
CGCCTGCAAGGGTCTAACCCGATTACTCCGGGCGAGGTAGGGGAGGCAGC
TAAGCCGCCGCGAGAGGCGGGAGTAGACAGCACACTGCGGGAATCTTTTC
CACCAGGGCGGATGGAGCCGATGACCGCGCATCGTTGCCAAGACAACGCA
CCTGCAGCGGTAGACCGTGGATCTTCCGACGGAGATCCCGCCGTTTTTAC
GATTGTATCTGGTGGGAGGGATGATAATGATAGTACCATCAACCCCGGCG
CGGATTCTCCAGACGCGTTTCCCAGACCCGCGCCTGCACTTGCGCCTGCA
CCCGAGAGCGGTAAATCCATCCGTGGCGACGACACCGTCGGCGTTCGGGA
CCATTTTCCCCTGAGACGGGAAGGCGTTGCCCCGTCATCGGGAGGCAGGG
GAAAGGCGGTGCGCATCCGCGTTTGTAAGGGGGGTGAGGGAATCGATGCT
GACGGAGACAGAGTGCGTTCGGGGTCGGGATGGGGTTACGGAAAGAAGGA
TGTCGGCGGCACGCGGGTTGGAGATGCGGCTCACGAACTTCGGACGGGCG
AAGCGCGAGGCTGTTTCAAGGGAGAGAGAACGTCGCGATCGTCGCAGCGG
TTTCCCCCCGAAAACCTCGATGTCCCGGAAGAAGAGAGTGCCCTCGAGAG
AACGTCGCGATCGTCGCAGCGGTTTCCCCCCGAAAACCTCGATGTCCCGG
AAGAAGAGAGTGCCCTCGAGGCGCGGGTCGCCGAGGCGGAGAGGCGCTTG
CGGGAGTTGCAAGATAAGGCCAAGAGGCGTCGGCGAGACAAGCGCGAGCT
CGCCGCTCTCCATCGGGCGCTGGCTCGCCAAGAGTCGCCTGGCTCGCGAT
CCACGTCCGCGCGGGTCGCCGAGGCGGAGAGGCGCTTGCGGGAGTTGCAA
GATAAGGCCAAGAGGCGTCGGCGAGACAAGCGCGAGCTCGCCGCTCTCCA
TCGGGCGCTGGCTCGCCAAGAGTCGCCTGGCTCGCGATCCACGTCC
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