mRNA_F-serratus_M_contig11.906.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig11.906.1 vs. uniprot
Match: D7G1F1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F1_ECTSI) HSP 1 Score: 422 bits (1086), Expect = 2.570e-140 Identity = 217/296 (73.31%), Postives = 253/296 (85.47%), Query Frame = 2
Query: 50 RSMRVQVSTTKMSSYIDARGEVTAQSDWTVGRLKEEVEKKFPGKIPASLQRLFKGTQLLPSSVTLEELSEGGEGPLVLLLDNAPPIDSSRFDPDTAVPSRRDGQVEAFSACLAAQATLEQSLLGTMRGASDEADSELTRSLRMKADFENTKALLQRTLEERPDTSVGQQPPQQAFGVLHEALRPLAHSLDVNWLQSAQYAIFVYICAQFGAHGAVRRALTLMLIPLIFLAQTRPARVGLKLARNLAGEIPVLTQLVLGLLQAPGQVILSLDADAYTRNLYGPEGPTFDEAFLDSRG 937
RSM++ VSTTK+SSYIDARGEV A+SDWTVG+LKEE+EKKFPG+IPASLQRLFKGTQLLPSS+TLEE SEG EGPL LLLDNAPPID+SRFDPDTAVP +DGQVEAFSACLAAQ+TL+++LL MRG + E D+EL+RS++MKADFENTKALLQRTL+E PD + ++ + FG+LHEALRPLAH LDVNW+Q+AQY IF YICAQFGA G +RR TLMLIP++ LAQTR ARVG K+ RNL E+PVLTQL LGLLQAP QVI+S+D AYTR LYGP GP +D+ FLD G
Sbjct: 148 RSMQILVSTTKISSYIDARGEVAARSDWTVGKLKEELEKKFPGRIPASLQRLFKGTQLLPSSMTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVPFSKDGQVEAFSACLAAQSTLQETLLAVMRGENSEDDAELSRSVKMKADFENTKALLQRTLDEVPDKTGDEE---ETFGILHEALRPLAHRLDVNWMQTAQYTIFTYICAQFGATGTIRRLATLMLIPMMLLAQTRSARVGAKMVRNLVAEVPVLTQLFLGLLQAPTQVIISVDPKAYTRGLYGPGGPKYDKEFLDEGG 440
BLAST of mRNA_F-serratus_M_contig11.906.1 vs. uniprot
Match: A0A0G4FT54_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FT54_VITBC) HSP 1 Score: 83.6 bits (205), Expect = 1.560e-13 Identity = 103/352 (29.26%), Postives = 157/352 (44.60%), Query Frame = 2
Query: 47 ARSMRVQVSTTKMSSYIDARGEVT-AQSDWTVGRLKEEVEKKFPGKIPASLQRLFKGTQLLPS-----SVTLEELSEGGEGPLVLLLDNAPPIDSSRFDPDTAVPSRRDGQVEAFSACLAA---QATLEQSLLGT--------MRGASDEADSELTRSLRMKADFENTKALLQRTLEE---------RPDTSV-GQQ--------------PPQQAF--GVLHEALRP----------LAHSLDVNWLQSAQYAIFVYICAQFGAHGAV----------RRALTLMLIPLIFLAQTRPARVGLKLARNLAGEIPVLTQL--VLGLLQAPGQVILSLDADAYTRNLYG-PEGP 904
A +R+ V+T S Y+D + +T + D V LK +E+ +PGK PA+LQRLF G+Q L + +++LS + P +LLD PP+D ++ + + + + A SA LAA A L + G G DE + + + + A F +T L+ +E+ RP TS G Q PP QAF V+H RP + +LD++W + + A + + +FG G +R L LM +PL+FL Q+RP + KL NL IP + V LL AP Q +L+ + D + L PE P
Sbjct: 51 AADVRLVVTTASGSRYLDHKQLITLSPHDTLVRSLKAAIEQSYPGKPPATLQRLFVGSQALKDDDMDLADVIDDLS--ADEPATVLLDMVPPVDQTQGKMVVSKMNEEEKRA-ALSAHLAALQYYAALWRRASGADSGEDVSDTDGLGDELKGDESSGVMLIARFRDTYRALEEAMEQQHMTKQKKARPPTSPEGSQQNEEGESTDHPTAPPPLQAFPEAVVHYPRRPRSLQGRLHRFVQLNLDIHWASTIRLAALLLVLWRFGPSGGSSSGSTPSEEQKRRLFLMCVPLVFLVQSRPVKFLAKLLFNL---IPPSSYWDGVASLLPAPQQELLTFNQDKFVERLANDPEAP 396
BLAST of mRNA_F-serratus_M_contig11.906.1 vs. uniprot
Match: K0RKX3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RKX3_THAOC) HSP 1 Score: 69.3 bits (168), Expect = 6.900e-9 Identity = 51/143 (35.66%), Postives = 69/143 (48.25%), Query Frame = 2
Query: 575 GVLHEALRPLAHSLDVNWLQSAQYAIFVYICAQFGAHGAVRRALTLMLIPLIFLAQTRPARVGLKLARNLAGEIPVLTQLVLGLLQAPGQVILSLDADAYTRNLYGPEGPTFDEAFLDSRGGDDGI---EDVETSDDCGGEFD 994
G R L +L+VNW + + A+ FG A RA L+ PL FL QTRP +V +K AGE P ++L LL AP Q I+S D +LYG + +E F R +G E+V+T DD E+D
Sbjct: 277 GAAMNVKRALQRNLNVNWADTTRNALLFLFFGYFGGRSAFSRAFLLLSAPLCFLIQTRPVKVAMKQLFYTAGEPP---GILLSLLPAPQQAIMSCDYAGIMVDLYGEDALEGEEWFEMDRAAREGRAVGEEVDTDDDDVEEYD 416
BLAST of mRNA_F-serratus_M_contig11.906.1 vs. uniprot
Match: B8LDG8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDG8_THAPS) HSP 1 Score: 61.2 bits (147), Expect = 4.780e-6 Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 2
Query: 596 RPLAHSLDVNWLQSAQYAIFVYICAQFGAHGAVRRALTLMLIPLIFLAQTRPARVGLKLARNLAGEIPVLTQLVLGLLQAPGQVILSLDADAYTRNLYG 892
R L +++VNW + + ++ FG + R L+ PL FL QTRP +V LK GE P ++L LL AP Q I+SLD + LYG
Sbjct: 379 RALQRNMNVNWADTTRNSLLFLFFGYFGGRNSFSRTFLLLSSPLCFLIQTRPVKVALKQVFYTMGEPP---GILLSLLPAPQQAIMSLDYGGVMKGLYG 474
BLAST of mRNA_F-serratus_M_contig11.906.1 vs. uniprot
Match: A0A7S0C9Q3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9Q3_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 4.180e-5 Identity = 34/101 (33.66%), Postives = 50/101 (49.50%), Query Frame = 2
Query: 596 RPLAHSLDVNWLQSAQYAIFVYICAQFGAHGAVRRALTLMLIPLIFLAQTRPARVGLKLARNLAGEIPVLTQLVLGLLQAPGQVILSLDADAYTRNLYGPE 898
R L +L++NW + + QFG + R L L+ PL F+ Q RP ++ +K G P ++L LL AP Q I+SLD R++YG E
Sbjct: 154 RSLQKNLNINWPTTIRNFFLFIFFGQFGGRDKISRTLMLLGAPLCFVVQARPVKIFIKQLFYAVGTPP---GILLSLLPAPEQAIMSLDVKKAMRDIYGVE 251 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig11.906.1 >prot_F-serratus_M_contig11.906.1 ID=prot_F-serratus_M_contig11.906.1|Name=mRNA_F-serratus_M_contig11.906.1|organism=Fucus serratus male|type=polypeptide|length=318bp MRVQVSTTKMSSYIDARGEVTAQSDWTVGRLKEEVEKKFPGKIPASLQRLback to top mRNA from alignment at F-serratus_M_contig11:233525..262046+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig11.906.1 ID=mRNA_F-serratus_M_contig11.906.1|Name=mRNA_F-serratus_M_contig11.906.1|organism=Fucus serratus male|type=mRNA|length=28522bp|location=Sequence derived from alignment at F-serratus_M_contig11:233525..262046+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig11:233525..262046+ >mRNA_F-serratus_M_contig11.906.1 ID=mRNA_F-serratus_M_contig11.906.1|Name=mRNA_F-serratus_M_contig11.906.1|organism=Fucus serratus male|type=CDS|length=1908bp|location=Sequence derived from alignment at F-serratus_M_contig11:233525..262046+ (Fucus serratus male)back to top |