mRNA_F-serratus_M_contig1098.897.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI) HSP 1 Score: 122 bits (307), Expect = 7.990e-33 Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 1 VMQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGIPRGQMISAVAS 327
V VK P CLGY+ F+ TF+AF++ RNPNLL+VRPTGFGGA NAK DTM SY+IA TRPLGP LL+GL LA+P+VE+ TGI R Q++SA+ S
Sbjct: 97 VQMVKNSPSCLGYDGSVFQATFEAFTEXXXXXXXXXXXXRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAIIS 205
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC) HSP 1 Score: 94.0 bits (232), Expect = 9.160e-22 Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 1 VMQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGIPRGQMISAVASKLG 336
+ VK + L + + F + +AFS+ FG EE+ MV +NP LL++ P+G GGA + TM FSYL+ YTRP GPFLLYGLL L P +E TGIP + + + S LG
Sbjct: 79 LQMVKDLTIVLAFKRNYFAPSLEAFSEVFGEEESKAMVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIP---IKTTITSALG 187
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS) HSP 1 Score: 85.5 bits (210), Expect = 3.530e-18 Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 10 VKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLG---PFLLYGLLLALALPVVEIATGIPRGQMISAV 321
VK PG L +N DNF + DAF + FG EE MV RNP LLSV+P A +A TM SY++ +TRP+G P L+ GLL A+P +E A G+ +G+++S++
Sbjct: 120 VKIQPGVLAFNKDNFAPSLDAFGETFGLEEAKDMVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTRPIGAAGPVLILGLL---AVPALESALGVGKGELLSSL 220
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.160e-17 Identity = 43/101 (42.57%), Postives = 55/101 (54.46%), Query Frame = 1
Query: 10 VKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGIPRGQMI 312
VKAVPGCL ++P NF+G GGA AK DT SY+IA+TRPLGP LL GL+ AL++P+VE TGIPR +++
Sbjct: 76 VKAVPGCLAFDPSNFQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A1Z5JHY5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHY5_FISSO) HSP 1 Score: 78.6 bits (192), Expect = 1.690e-15 Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 19 VPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGI 294
+P CL + FK + +A+S+ FG ++ + MV RNP LL+V+P+ A TMTFSYL+AYTRP L L + LA+PVVE TGI
Sbjct: 124 LPVCLSFERTWFKPSLEAYSEIFGKDKAMAMVARNPGLLAVKPSD---AATVTDQTMTFSYLVAYTRPYSKVTLPLLFVLLAIPVVEAITGI 212
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A7S2K6C2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6C2_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 5.350e-12 Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 1 VMQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGI 294
++ V P L +N NF TF + NFG + + V RNP L+SV PTG+GGA A +T+ SY++ TR G L L L P++E TG+
Sbjct: 87 MIMVTKCPKVLEFNGSNFAPTFANYCTNFGDDVALATVLRNPALMSVAPTGYGGADGAGQETVVLSYVVDATRDGGQVWLSLLAFLLLTPLLEQVTGV 184
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A1E7FNY1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNY1_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.010e-7 Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 1
Query: 10 VKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGI 294
VK P CL ++ F T NP LL+V P A+ + TM FSY+IA+TRP+G F G+L L++P +E +TGI
Sbjct: 119 VKTFPICLTFDTKQFSKTXXXXXXXXXXXXXXXXXXXNPGLLAVEPKD---AVQSTEQTMVFSYIIAFTRPIGIFGPIGILALLSVPGIEASTGI 210 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1098.897.1 >prot_F-serratus_M_contig1098.897.1 ID=prot_F-serratus_M_contig1098.897.1|Name=mRNA_F-serratus_M_contig1098.897.1|organism=Fucus serratus male|type=polypeptide|length=113bp MQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGback to top mRNA from alignment at F-serratus_M_contig1098:185584..186361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1098.897.1 ID=mRNA_F-serratus_M_contig1098.897.1|Name=mRNA_F-serratus_M_contig1098.897.1|organism=Fucus serratus male|type=mRNA|length=778bp|location=Sequence derived from alignment at F-serratus_M_contig1098:185584..186361- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1098:185584..186361- >mRNA_F-serratus_M_contig1098.897.1 ID=mRNA_F-serratus_M_contig1098.897.1|Name=mRNA_F-serratus_M_contig1098.897.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig1098:185584..186361- (Fucus serratus male)back to top |