mRNA_F-serratus_M_contig1098.897.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1098.897.1
Unique NamemRNA_F-serratus_M_contig1098.897.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.990e-33
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 VMQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGIPRGQMISAVAS 327
            V  VK  P CLGY+   F+ TF+AF++            RNPNLL+VRPTGFGGA NAK DTM  SY+IA TRPLGP LL+GL   LA+P+VE+ TGI R Q++SA+ S
Sbjct:   97 VQMVKNSPSCLGYDGSVFQATFEAFTEXXXXXXXXXXXXRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAIIS 205          
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC)

HSP 1 Score: 94.0 bits (232), Expect = 9.160e-22
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 VMQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGIPRGQMISAVASKLG 336
            +  VK +   L +  + F  + +AFS+ FG EE+  MV +NP LL++ P+G GGA +    TM FSYL+ YTRP GPFLLYGLL  L  P +E  TGIP   + + + S LG
Sbjct:   79 LQMVKDLTIVLAFKRNYFAPSLEAFSEVFGEEESKAMVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIP---IKTTITSALG 187          
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS)

HSP 1 Score: 85.5 bits (210), Expect = 3.530e-18
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   10 VKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLG---PFLLYGLLLALALPVVEIATGIPRGQMISAV 321
            VK  PG L +N DNF  + DAF + FG EE   MV RNP LLSV+P     A +A   TM  SY++ +TRP+G   P L+ GLL   A+P +E A G+ +G+++S++
Sbjct:  120 VKIQPGVLAFNKDNFAPSLDAFGETFGLEEAKDMVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTRPIGAAGPVLILGLL---AVPALESALGVGKGELLSSL 220          
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.160e-17
Identity = 43/101 (42.57%), Postives = 55/101 (54.46%), Query Frame = 1
Query:   10 VKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGIPRGQMI 312
            VKAVPGCL ++P NF+G                                GGA  AK DT   SY+IA+TRPLGP LL GL+ AL++P+VE  TGIPR +++
Sbjct:   76 VKAVPGCLAFDPSNFQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176          
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A1Z5JHY5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHY5_FISSO)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-15
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   19 VPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGI 294
            +P CL +    FK + +A+S+ FG ++ + MV RNP LL+V+P+    A      TMTFSYL+AYTRP     L  L + LA+PVVE  TGI
Sbjct:  124 LPVCLSFERTWFKPSLEAYSEIFGKDKAMAMVARNPGLLAVKPSD---AATVTDQTMTFSYLVAYTRPYSKVTLPLLFVLLAIPVVEAITGI 212          
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A7S2K6C2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6C2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.350e-12
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    1 VMQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGI 294
            ++ V   P  L +N  NF  TF  +  NFG +  +  V RNP L+SV PTG+GGA  A  +T+  SY++  TR  G   L  L   L  P++E  TG+
Sbjct:   87 MIMVTKCPKVLEFNGSNFAPTFANYCTNFGDDVALATVLRNPALMSVAPTGYGGADGAGQETVVLSYVVDATRDGGQVWLSLLAFLLLTPLLEQVTGV 184          
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Match: A0A1E7FNY1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNY1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.010e-7
Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 1
Query:   10 VKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTGFGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGI 294
            VK  P CL ++   F  T                   NP LL+V P     A+ +   TM FSY+IA+TRP+G F   G+L  L++P +E +TGI
Sbjct:  119 VKTFPICLTFDTKQFSKTXXXXXXXXXXXXXXXXXXXNPGLLAVEPKD---AVQSTEQTMVFSYIIAFTRPIGIFGPIGILALLSVPGIEASTGI 210          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1098.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FYY7_ECTSI7.990e-3355.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B7FNV7_PHATC9.160e-2245.54Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B5YMT8_THAPS3.530e-1844.86Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7R9UE42_9STRA3.160e-1742.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5JHY5_FISSO1.690e-1545.65Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2K6C2_9STRA5.350e-1238.78Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7FNY1_9STRA3.010e-735.79Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1098contigF-serratus_M_contig1098:185584..186361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.9e-25
Seed eggNOG ortholog2880.D7FYY7
Hectar predicted targeting categoryother localisation
EggNOG OGs2C1F6@1,2S9PY@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002980.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size342
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1098.897.1prot_F-serratus_M_contig1098.897.1Fucus serratus malepolypeptideF-serratus_M_contig1098 185584..186358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.880636-CDS-F-serratus_M_contig1098:185583..1857071622928957.880636-CDS-F-serratus_M_contig1098:185583..185707Fucus serratus maleCDSF-serratus_M_contig1098 185584..185707 -
1690962646.0436237-CDS-F-serratus_M_contig1098:185583..1857071690962646.0436237-CDS-F-serratus_M_contig1098:185583..185707Fucus serratus maleCDSF-serratus_M_contig1098 185584..185707 -
1622928957.8944454-CDS-F-serratus_M_contig1098:186143..1863581622928957.8944454-CDS-F-serratus_M_contig1098:186143..186358Fucus serratus maleCDSF-serratus_M_contig1098 186144..186358 -
1690962646.0595157-CDS-F-serratus_M_contig1098:186143..1863581690962646.0595157-CDS-F-serratus_M_contig1098:186143..186358Fucus serratus maleCDSF-serratus_M_contig1098 186144..186358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.9078891-UTR-F-serratus_M_contig1098:186358..1863611622928957.9078891-UTR-F-serratus_M_contig1098:186358..186361Fucus serratus maleUTRF-serratus_M_contig1098 186359..186361 -
1690962646.068514-UTR-F-serratus_M_contig1098:186358..1863611690962646.068514-UTR-F-serratus_M_contig1098:186358..186361Fucus serratus maleUTRF-serratus_M_contig1098 186359..186361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1098.897.1

>prot_F-serratus_M_contig1098.897.1 ID=prot_F-serratus_M_contig1098.897.1|Name=mRNA_F-serratus_M_contig1098.897.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MQVKAVPGCLGYNPDNFKGTFDAFSDNFGAEETIGMVTRNPNLLSVRPTG
FGGAMNAKGDTMTFSYLIAYTRPLGPFLLYGLLLALALPVVEIATGIPRG
QMISAVASKLGG*
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mRNA from alignment at F-serratus_M_contig1098:185584..186361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1098.897.1 ID=mRNA_F-serratus_M_contig1098.897.1|Name=mRNA_F-serratus_M_contig1098.897.1|organism=Fucus serratus male|type=mRNA|length=778bp|location=Sequence derived from alignment at F-serratus_M_contig1098:185584..186361- (Fucus serratus male)
GTGATGCAGGTCAAGGCAGTTCCCGGCTGCCTCGGATACAACCCTGACAA CTTCAAGGGGACTTTCGATGCTTTCTCCGATAACTTCGGGGCCGAGGAAA CGATCGGCATGGTCACCCGGAACCCGAACCTCCTCTCCGTCCGACCCACC GGCTTCGGAGGCGCGATGAACGCAAAGGGCGACACCATGACATTCAGCTA CCTCATCGCCTACACGAGGTAAGTAACACCCCGAATTGATAAATATATAT ATCTGAGTTGCAGGAATGCGGATGGCCTAACGAAATCCGCAGGCGCTCGT GTTTGCTTTTTTTGTTCCAAGGGGGGAGGGGGTGGGGGTAGCTGCGTGCG GGAGACCACTCGCTGGTGAAACGTAGACCAAACGATGTTGGCGAGGTTGT GGTGTACTATGAATAGCGTGTGTGTGTAAGGCACGCTTGGAAGGCCGCGT CGAGTCGCAAGGAACTTGAGAAATAGAGAGCTAGCATGTGTATCCGGGTG GCTCTTGGTACATAATTATCGACAAAGAGCCTTTGGGGCTTGGCGGAGAT CTTCGCTCGTATTACTCGATAGACTGAAGACCCTCATCTCCCCGGGCTGC GCTCTTGAATGCCACCCCATCAAATTTCAACGGATGCACGCGCGCTACGA TCAGGCCGTTGGGACCCTTCCTGCTGTACGGGCTGCTCCTTGCTCTTGCC CTTCCGGTGGTCGAGATTGCCACGGGCATCCCGCGCGGCCAGATGATCTC AGCGGTGGCGTCCAAATTGGGCGGTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1098:185584..186361-

>mRNA_F-serratus_M_contig1098.897.1 ID=mRNA_F-serratus_M_contig1098.897.1|Name=mRNA_F-serratus_M_contig1098.897.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig1098:185584..186361- (Fucus serratus male)
ATGCAGGTCAAGGCAGTTCCCGGCTGCCTCGGATACAACCCTGACAACTT
CAAGGGGACTTTCGATGCTTTCTCCGATAACTTCGGGGCCGAGGAAACGA
TCGGCATGGTCACCCGGAACCCGAACCTCCTCTCCGTCCGACCCACCGGC
TTCGGAGGCGCGATGAACGCAAAGGGCGACACCATGACATTCAGCTACCT
CATCGCCTACACGAGATGCAGGTCAAGGCAGTTCCCGGCTGCCTCGGATA
CAACCCTGACAACTTCAAGGGGACTTTCGATGCTTTCTCCGATAACTTCG
GGGCCGAGGAAACGATCGGCATGGTCACCCGGAACCCGAACCTCCTCTCC
GTCCGACCCACCGGCTTCGGAGGCGCGATGAACGCAAAGGGCGACACCAT
GACATTCAGCTACCTCATCGCCTACACGAGGCCGTTGGGACCCTTCCTGC
TGTACGGGCTGCTCCTTGCTCTTGCCCTTCCGGTGGTCGAGATTGCCACG
GGCATCCCGCGCGGCCAGATGATCTCAGCGGTGGCGTCCAAATTGGGCGG
TTGAGCCGTTGGGACCCTTCCTGCTGTACGGGCTGCTCCTTGCTCTTGCC
CTTCCGGTGGTCGAGATTGCCACGGGCATCCCGCGCGGCCAGATGATCTC
AGCGGTGGCGTCCAAATTGGGCGGTTGA
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