mRNA_F-serratus_M_contig1095.872.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1095.872.1
Unique NamemRNA_F-serratus_M_contig1095.872.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1095.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1095contigF-serratus_M_contig1095:26286..26990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size205
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1095.872.1prot_F-serratus_M_contig1095.872.1Fucus serratus malepolypeptideF-serratus_M_contig1095 26288..26916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.560357-UTR-F-serratus_M_contig1095:26285..262871622928952.560357-UTR-F-serratus_M_contig1095:26285..26287Fucus serratus maleUTRF-serratus_M_contig1095 26286..26287 +
1690962643.0820358-UTR-F-serratus_M_contig1095:26285..262871690962643.0820358-UTR-F-serratus_M_contig1095:26285..26287Fucus serratus maleUTRF-serratus_M_contig1095 26286..26287 +
1622928952.6042686-UTR-F-serratus_M_contig1095:26916..269901622928952.6042686-UTR-F-serratus_M_contig1095:26916..26990Fucus serratus maleUTRF-serratus_M_contig1095 26917..26990 +
1690962643.1071525-UTR-F-serratus_M_contig1095:26916..269901690962643.1071525-UTR-F-serratus_M_contig1095:26916..26990Fucus serratus maleUTRF-serratus_M_contig1095 26917..26990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.5750287-CDS-F-serratus_M_contig1095:26287..263811622928952.5750287-CDS-F-serratus_M_contig1095:26287..26381Fucus serratus maleCDSF-serratus_M_contig1095 26288..26381 +
1690962643.0904062-CDS-F-serratus_M_contig1095:26287..263811690962643.0904062-CDS-F-serratus_M_contig1095:26287..26381Fucus serratus maleCDSF-serratus_M_contig1095 26288..26381 +
1622928952.5887468-CDS-F-serratus_M_contig1095:26881..269161622928952.5887468-CDS-F-serratus_M_contig1095:26881..26916Fucus serratus maleCDSF-serratus_M_contig1095 26882..26916 +
1690962643.098873-CDS-F-serratus_M_contig1095:26881..269161690962643.098873-CDS-F-serratus_M_contig1095:26881..26916Fucus serratus maleCDSF-serratus_M_contig1095 26882..26916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1095.872.1

>prot_F-serratus_M_contig1095.872.1 ID=prot_F-serratus_M_contig1095.872.1|Name=mRNA_F-serratus_M_contig1095.872.1|organism=Fucus serratus male|type=polypeptide|length=43bp
MLCLFVAHRSEPPSHQQPNPRTLSQQIILRAVKRKTKTKTKN*
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mRNA from alignment at F-serratus_M_contig1095:26286..26990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1095.872.1 ID=mRNA_F-serratus_M_contig1095.872.1|Name=mRNA_F-serratus_M_contig1095.872.1|organism=Fucus serratus male|type=mRNA|length=705bp|location=Sequence derived from alignment at F-serratus_M_contig1095:26286..26990+ (Fucus serratus male)
CTATGTTGTGCTTGTTCGTAGCCCACAGGTCAGAGCCCCCCTCACATCAG
CAGCCGAACCCCCGAACTCTATCACAACAAATTATACTAAGGGCGGGTCT
TAGATCAAAAAAAGCGCAGGGAACATGGAACGTGGAACTTCGAATTACTT
GCCATTCCTCGTTCCCTGTTCTATAAGCTGTGTCCAGAAAGAAAAAAAAA
CGCTAGAACGAGGAACTGTGGAACTTGGATTTAGGTGAAAAGTCTGGCAG
GGCCACGATTTGAGAACATCGACACAACGACACAGAAGGTAATGGCGCAT
GGAAAATTTTATTTTGCCTGGGGACCATTGTTTTGGAAATTTCTGAGCCT
TTTGCCCTCGACCAGCCCGTTCCATGTGGGCTCTTCACTAATAAAAAGGT
ACGTGGAGGTTAAAATTATTTTGAAGCAGGGAATAGCAAACGTGGAACTG
CCGCAGGTGCAGGAAAGTTATTTCGACGGACCATCTTTTCAGGAAAGTTA
TTTTTTACCGTTGACCAATCGTGGAGGGATTCGAAGTTCCACGTTCCTTG
TTCCCTGCACTTTTTTTTGATCTAAGACCCGCCCTAATAACATCAGTAAA
ACGAAAAACAAAAACAAAAACAAAAAACTGAAATTATCAATGGAATCGTA
GGGTACTCTGTACGAGTAAACAGACTGCAGTAAAGCAGCAATATCCTTAC
GAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1095:26286..26990+

>mRNA_F-serratus_M_contig1095.872.1 ID=mRNA_F-serratus_M_contig1095.872.1|Name=mRNA_F-serratus_M_contig1095.872.1|organism=Fucus serratus male|type=CDS|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig1095:26286..26990+ (Fucus serratus male)
ATGTTGTGCTTGTTCGTAGCCCACAGGTCAGAGCCCCCCTCACATCAGCA
GCCGAACCCCCGAACTCTATCACAACAAATTATACTAAGGGCGGATGTTG
TGCTTGTTCGTAGCCCACAGGTCAGAGCCCCCCTCACATCAGCAGCCGAA
CCCCCGAACTCTATCACAACAAATTATACTAAGGGCGGTAAAACGAAAAA
CAAAAACAAAAACAAAAAACTGATAAAACGAAAAACAAAAACAAAAACAA
AAAACTGA
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