mRNA_F-serratus_M_contig109.834.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig109.834.1
Unique NamemRNA_F-serratus_M_contig109.834.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig109.834.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.180e-16
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 
Query:   29 AAALVAVTVLKLVPMLMGKASSMCRCDVDAVKRDAEDWRALNGVEYDMAFEGVNARV-------------EAGC------RVLEGCECQDETC---SSRLAACPVVVRRLLRVPSSKCPLPQCED---IDPADLLQIY 367
            AAA  AV  L + PML+G+AS MC CD+ A+  +A DW A NG  ++   + + AR+             + GC      R+L+GCEC  E+     SRL ACP+V RR+LRVP   CP  +CED   +   DL  ++
Sbjct: 1051 AAAFGAVVALVVAPMLIGRASQMCECDMGAILSNAVDWVAFNGEAFEEELQRMEARLRLSPGTMAGKNVKDEGCSGGGMGRILDGCECNLESSVSSCSRLVACPIVTRRILRVPEPVCP--ECEDGSGVFGTDLFDLF 1186
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BLAST of mRNA_F-serratus_M_contig109.834.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-14
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 2 
Query:   47 VTVLKLVPMLMGKASSMCRCDVDAVKRDAEDWRALNGVEYDMAFEGVNARVEA-------------GC------RVLEGCECQDE---TCSSRLAACPVVVRRLLRVPSSKCPLPQCED---IDPADLLQIY 367
            V  L + PML+G+AS MC CD++A+  +A DW A NG  ++   + + AR++              GC      R+L+ CEC+ E   +  SRL ACP+V RR+LRVP   CP  +CED   +   DL  ++
Sbjct:  813 VVALVVAPMLIGRASQMCECDMEAILSNAVDWVAFNGEAFEEELQRMEARLKLPPGTMAGKDGKNEGCSEGGMGRILDRCECKLERSVSSCSRLVACPIVTRRILRVPKPVCP--ECEDGSGVFGTDLFDLF 942
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig109.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K5_ECTSI3.180e-1639.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAV0_9PHAE1.720e-1437.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig109contigF-serratus_M_contig109:749300..751161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.9e-13
Seed eggNOG ortholog2880.D7G6K5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EGD3@1,2SAJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1174
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig109.834.1prot_F-serratus_M_contig109.834.1Fucus serratus malepolypeptideF-serratus_M_contig109 749370..750360 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.1245866-UTR-F-serratus_M_contig109:749299..7493691622928946.1245866-UTR-F-serratus_M_contig109:749299..749369Fucus serratus maleUTRF-serratus_M_contig109 749300..749369 +
1690962640.0819192-UTR-F-serratus_M_contig109:749299..7493691690962640.0819192-UTR-F-serratus_M_contig109:749299..749369Fucus serratus maleUTRF-serratus_M_contig109 749300..749369 +
1622928946.1620038-UTR-F-serratus_M_contig109:750360..7511611622928946.1620038-UTR-F-serratus_M_contig109:750360..751161Fucus serratus maleUTRF-serratus_M_contig109 750361..751161 +
1690962640.1108077-UTR-F-serratus_M_contig109:750360..7511611690962640.1108077-UTR-F-serratus_M_contig109:750360..751161Fucus serratus maleUTRF-serratus_M_contig109 750361..751161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.1361716-CDS-F-serratus_M_contig109:749369..7495611622928946.1361716-CDS-F-serratus_M_contig109:749369..749561Fucus serratus maleCDSF-serratus_M_contig109 749370..749561 +
1690962640.0924096-CDS-F-serratus_M_contig109:749369..7495611690962640.0924096-CDS-F-serratus_M_contig109:749369..749561Fucus serratus maleCDSF-serratus_M_contig109 749370..749561 +
1622928946.150871-CDS-F-serratus_M_contig109:750249..7503601622928946.150871-CDS-F-serratus_M_contig109:750249..750360Fucus serratus maleCDSF-serratus_M_contig109 750250..750360 +
1690962640.101656-CDS-F-serratus_M_contig109:750249..7503601690962640.101656-CDS-F-serratus_M_contig109:750249..750360Fucus serratus maleCDSF-serratus_M_contig109 750250..750360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig109.834.1

>prot_F-serratus_M_contig109.834.1 ID=prot_F-serratus_M_contig109.834.1|Name=mRNA_F-serratus_M_contig109.834.1|organism=Fucus serratus male|type=polypeptide|length=101bp
MLMGKASSMCRCDVDAVKRDAEDWRALNGVEYDMAFEGVNARVEAGCRVL
EGCECQDETCSSRLAACPVVVRRLLRVPSSKCPLPQCEDIDPADLLQIYH
*
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mRNA from alignment at F-serratus_M_contig109:749300..751161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig109.834.1 ID=mRNA_F-serratus_M_contig109.834.1|Name=mRNA_F-serratus_M_contig109.834.1|organism=Fucus serratus male|type=mRNA|length=1862bp|location=Sequence derived from alignment at F-serratus_M_contig109:749300..751161+ (Fucus serratus male)
AGGGGAAGCTGGGGGGGACCAAGTTAGTGCCGCGGCGCTTGTAGCGGTCA
CCGTGCTGAAACTGGTCCCGATGCTGATGGGCAAGGCGTCGTCGATGTGC
CGCTGTGACGTCGACGCCGTCAAGCGAGACGCGGAGGACTGGAGGGCACT
AAATGGCGTGGAGTACGACATGGCTTTTGAAGGCGTCAACGCGAGGGTCG
AGGCGGGTTGTCGTGTGCTAGAGGGATGCGAGTGCCAGGATGAAACCTGC
AGCAGCCGGCTGGTGAGTGTATTTGATATATTTATTTCGCTTTGCTCCCC
CCCGCTTCCTTGAGATTTTTTTGGCATGCCTCAAATTGCTATCCGCTCTT
CTTATGAATATAATGAATGGTGTAGTACAAAGCTGAGGGTGACAATCATC
TGTCTGTAGAGCCGTAGTGTCCACGACGCAAACGATGATTTGTTATTCTG
GAGACATTGAACGCAAGCCTGCGATGGTACAAACTTATAAGGATGAAAGT
CATGTGAGAAAGTACCGTCGAAGGGCAAAGTTTACAGGCACTCACTCGTA
AGGTACAAGAGTTCCCCAAGGTCCTAGTTTTTGCAGGTCAGCAGGGACGA
CAGGGCCCTGGCGAGTGCGTCACCACATTGATGGACTTGTCAAAACGATC
GCCTTCGACTTCATTCTAGAGAAACCGCTGGCAAACCCATCGGGCCACAA
GAAAAGTTGATTATCAATGTTCAGTCGCGTACAACTCGTAGGACGCTTCT
GGGGAAATAACTATTTTCGTTAAGTAGCTCTAGTGTGCAGTTTGAAGTAT
TAAATATCTTGTGGCGTGGGAAGGAAAGGACTGCGTGAGAGCCTATACTG
CATTTATACCCATATGTTTCCCCGGGAACGTCTTGTGGACTCAAGCGCCC
TTCTCTTCCCCTCTGCCATCGCAATCTTTTGTTTCTATTTCAAACCACAG
GCAGCTTGTCCCGTGGTCGTCCGCCGACTGCTGCGGGTTCCTTCTTCCAA
GTGCCCCCTACCACAGTGCGAAGATATAGATCCTGCCGATCTGTTGCAAA
TTTATCATTAGTAAATATTATTTATAGTAATTTCCCGAATGGCTTATTGA
TACAAAATCTAGTATACCTAAAGTGAGGTTGAAAACGGCCCATTGACGTG
GAAACGCGAACGAGTCACAGGCACGCGGATGACACAAGCTGAATCGTGCA
ACTTGGACGGCGTTTCGAAATTATGATGAACGTACGAATGCAACTTTCAT
GGGGCTGATGTCAGATCCTGAGAAACGAAAATGGTTTTACGCGGTTCGTT
GACTTGAGGAAACTAGCCTGTTGTGGGTCGTTGTATAAACGGAATATATT
TGCAGAGAGTAAAAAGAGTGCACTGGTCGTGGTAGGGAGAGGGTCTACGT
ACGCGTTGGTCATTTAGACTAGTCGGTTGAGCCCACCTTGCGGTTCTGGC
GTTGCCCACACCTCTGCTTGTTGGGGGTGACGCTCTCTCTGTAAAGATGC
TTCTTCTACTTTCCTGCGTTCGAAGTACAGTACCGGTAGTCAACTCCGAG
CGGGTCATGACTCCGTCTCGGCACGGTTGGTAAACGGGGAAGGGGCTCAT
GTGTCGTGTTTCTCTCAGGCTTCTTTCCTTTTTGTTTCGGCTAGGAGCAT
TAAGTTCGAGTGGCCTTTTGGCTTTCACCCCACGATCATCTTTTCTGCCC
CCCTTGGTCCCACATGCAACTCCTACTACCACCTATTTATGTCATAGGCG
CGCTATATAACAGATATATGTGCCTTTTTTATCAGTTATCGATTTGAAGA
AACTTGAGAGAGCGCCGTAGAGCTCTTTAGGTTTTCCACTACGAAGGGCC
GTTCTAAACGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig109:749300..751161+

>mRNA_F-serratus_M_contig109.834.1 ID=mRNA_F-serratus_M_contig109.834.1|Name=mRNA_F-serratus_M_contig109.834.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig109:749300..751161+ (Fucus serratus male)
ATGCTGATGGGCAAGGCGTCGTCGATGTGCCGCTGTGACGTCGACGCCGT
CAAGCGAGACGCGGAGGACTGGAGGGCACTAAATGGCGTGGAGTACGACA
TGGCTTTTGAAGGCGTCAACGCGAGGGTCGAGGCGGGTTGTCGTGTGCTA
GAGGGATGCGAGTGCCAGGATGAAACCTGCAGCAGCCGGCTGATGCTGAT
GGGCAAGGCGTCGTCGATGTGCCGCTGTGACGTCGACGCCGTCAAGCGAG
ACGCGGAGGACTGGAGGGCACTAAATGGCGTGGAGTACGACATGGCTTTT
GAAGGCGTCAACGCGAGGGTCGAGGCGGGTTGTCGTGTGCTAGAGGGATG
CGAGTGCCAGGATGAAACCTGCAGCAGCCGGCTGGCAGCTTGTCCCGTGG
TCGTCCGCCGACTGCTGCGGGTTCCTTCTTCCAAGTGCCCCCTACCACAG
TGCGAAGATATAGATCCTGCCGATCTGTTGCAAATTTATCATTAGGCAGC
TTGTCCCGTGGTCGTCCGCCGACTGCTGCGGGTTCCTTCTTCCAAGTGCC
CCCTACCACAGTGCGAAGATATAGATCCTGCCGATCTGTTGCAAATTTAT
CATTAG
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