mRNA_F-serratus_M_contig1088.811.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1088.811.1
Unique NamemRNA_F-serratus_M_contig1088.811.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1088.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1088contigF-serratus_M_contig1088:120012..120393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size383
Cds size297
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.877994-UTR-F-serratus_M_contig1088:120011..1200961622928941.877994-UTR-F-serratus_M_contig1088:120011..120096Fucus serratus maleUTRF-serratus_M_contig1088 120012..120096 +
1690962637.9077556-UTR-F-serratus_M_contig1088:120011..1200961690962637.9077556-UTR-F-serratus_M_contig1088:120011..120096Fucus serratus maleUTRF-serratus_M_contig1088 120012..120096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.8931236-CDS-F-serratus_M_contig1088:120096..1203931622928941.8931236-CDS-F-serratus_M_contig1088:120096..120393Fucus serratus maleCDSF-serratus_M_contig1088 120097..120393 +
1690962637.936325-CDS-F-serratus_M_contig1088:120096..1203931690962637.936325-CDS-F-serratus_M_contig1088:120096..120393Fucus serratus maleCDSF-serratus_M_contig1088 120097..120393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1088.811.1prot_F-serratus_M_contig1088.811.1Fucus serratus malepolypeptideF-serratus_M_contig1088 120097..120393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1088.811.1

>prot_F-serratus_M_contig1088.811.1 ID=prot_F-serratus_M_contig1088.811.1|Name=mRNA_F-serratus_M_contig1088.811.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MHGAKAMPFCRHPSWASLLLFILVLLAMVAVFAAADSPDFSMSKHEMVVA
TGYYTEGGKYIGGVPRFGSEIESYECLAFISASNGTTTTTTTSSPASNG
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mRNA from alignment at F-serratus_M_contig1088:120012..120393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1088.811.1 ID=mRNA_F-serratus_M_contig1088.811.1|Name=mRNA_F-serratus_M_contig1088.811.1|organism=Fucus serratus male|type=mRNA|length=382bp|location=Sequence derived from alignment at F-serratus_M_contig1088:120012..120393+ (Fucus serratus male)
CAGCGAGGGTCATCACGCCGCCTGGTTAATTAGTAAGTAATAACGAAGCG
GCGGGGGACGCTGAGTAAGAGAGGACGACGAAGACATGCACGGCGCCAAG
GCAATGCCATTTTGTCGCCACCCCTCCTGGGCGTCATTGCTGCTTTTTAT
ATTGGTGCTGCTGGCGATGGTCGCAGTCTTCGCAGCCGCCGACTCGCCGG
ATTTTTCTATGAGCAAGCACGAAATGGTAGTCGCCACTGGCTACTACACC
GAAGGGGGCAAGTACATTGGGGGTGTGCCTAGGTTCGGCAGCGAGATCGA
GTCCTACGAATGCCTCGCTTTCATCTCGGCGTCGAATGGCACCACCACCA
CCACCACCACGTCCAGCCCTGCGTCGAATGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1088:120012..120393+

>mRNA_F-serratus_M_contig1088.811.1 ID=mRNA_F-serratus_M_contig1088.811.1|Name=mRNA_F-serratus_M_contig1088.811.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig1088:120012..120393+ (Fucus serratus male)
ATGCACGGCGCCAAGGCAATGCCATTTTGTCGCCACCCCTCCTGGGCGTC
ATTGCTGCTTTTTATATTGGTGCTGCTGGCGATGGTCGCAGTCTTCGCAG
CCGCCGACTCGCCGGATTTTTCTATGAGCAAGCACGAAATGGTAGTCGCC
ACTGGCTACTACACCGAAGGGGGCAAGTACATTGGGGGTGTGCCTAGGTT
CGGCAGCGAGATCGAGTCCTACGAATGCCTCGCTTTCATCTCGGCGTCGA
ATGGCACCACCACCACCACCACCACGTCCAGCCCTGCGTCGAATGGGATG
CACGGCGCCAAGGCAATGCCATTTTGTCGCCACCCCTCCTGGGCGTCATT
GCTGCTTTTTATATTGGTGCTGCTGGCGATGGTCGCAGTCTTCGCAGCCG
CCGACTCGCCGGATTTTTCTATGAGCAAGCACGAAATGGTAGTCGCCACT
GGCTACTACACCGAAGGGGGCAAGTACATTGGGGGTGTGCCTAGGTTCGG
CAGCGAGATCGAGTCCTACGAATGCCTCGCTTTCATCTCGGCGTCGAATG
GCACCACCACCACCACCACCACGTCCAGCCCTGCGTCGAATGGG
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