mRNA_F-serratus_M_contig108.765.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig108.765.1
Unique NamemRNA_F-serratus_M_contig108.765.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:609776..611321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1546
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.765.1prot_F-serratus_M_contig108.765.1Fucus serratus malepolypeptideF-serratus_M_contig108 610076..610924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.3100638-UTR-F-serratus_M_contig108:609775..6100751622928928.3100638-UTR-F-serratus_M_contig108:609775..610075Fucus serratus maleUTRF-serratus_M_contig108 609776..610075 +
1690962633.097971-UTR-F-serratus_M_contig108:609775..6100751690962633.097971-UTR-F-serratus_M_contig108:609775..610075Fucus serratus maleUTRF-serratus_M_contig108 609776..610075 +
1622928928.3414118-UTR-F-serratus_M_contig108:610924..6113211622928928.3414118-UTR-F-serratus_M_contig108:610924..611321Fucus serratus maleUTRF-serratus_M_contig108 610925..611321 +
1690962633.1205587-UTR-F-serratus_M_contig108:610924..6113211690962633.1205587-UTR-F-serratus_M_contig108:610924..611321Fucus serratus maleUTRF-serratus_M_contig108 610925..611321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.3264444-CDS-F-serratus_M_contig108:610075..6109241622928928.3264444-CDS-F-serratus_M_contig108:610075..610924Fucus serratus maleCDSF-serratus_M_contig108 610076..610924 +
1690962633.1086888-CDS-F-serratus_M_contig108:610075..6109241690962633.1086888-CDS-F-serratus_M_contig108:610075..610924Fucus serratus maleCDSF-serratus_M_contig108 610076..610924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig108.765.1

>prot_F-serratus_M_contig108.765.1 ID=prot_F-serratus_M_contig108.765.1|Name=mRNA_F-serratus_M_contig108.765.1|organism=Fucus serratus male|type=polypeptide|length=283bp
MLMRGCVSLNYSFQLPLPIVCQGVLACLRCREMSRRSQGREDGAGDVVVC
SIGRVRFASYCSLFVFVFARWPVPISCAAVRSTTRDSIYTALCSGDGLEK
LYETLGIARNIPSLFPRASTLKTIQRLLRGKRILLKVFSFCGEKWCMAAF
ALCFFCVRVFRHVSSRKLDADNHQPSGGRCSCGLSGTDGRSKRPSAVLPP
LVFVSIPALVSPSSSRVLIFSLLICCPGEFDHWRRFLGRLGKGFFLLEGG
GGRVEVVHTRPLILLRGFYRLIFHQMETQVMY*
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mRNA from alignment at F-serratus_M_contig108:609776..611321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig108.765.1 ID=mRNA_F-serratus_M_contig108.765.1|Name=mRNA_F-serratus_M_contig108.765.1|organism=Fucus serratus male|type=mRNA|length=1546bp|location=Sequence derived from alignment at F-serratus_M_contig108:609776..611321+ (Fucus serratus male)
TAACCGTCTCTATCTCTCTCTCTCTTCCGCGTCATATCGGGTTGGCGTTT
CTCTGACGGGGGGTGGGTCGGTAGGTGCGTTTTGAACATGAGGTATCGGA
GTGGATCTGATACAGTGCTCTTTCGAGGGCGCACAGGTTTGTACCGAGAC
CTTAGTTTGCTGGCCTGGCTTGAGATTCTCAGGGCAGAGTCCGCGCGCCT
GATTGCGCGTGTTTGTAGTTATGAACCGTAGCGAGGTTTATTTTCGGAAG
AAGCGCGCCGCTTTTGGGAGGGTTTGGTTGAAGTACACAGAGGATGGACG
ATGTTGATGCGGGGATGTGTTTCTCTCAACTACAGCTTTCAGCTGCCGCT
GCCCATCGTGTGTCAGGGTGTATTAGCCTGTCTCAGGTGCAGGGAAATGA
GTAGAAGATCGCAGGGGCGCGAGGATGGAGCGGGTGACGTGGTAGTGTGC
TCGATCGGGCGTGTTAGGTTTGCCTCATATTGTTCTTTGTTTGTTTTCGT
TTTCGCGCGTTGGCCTGTACCCATCTCCTGTGCTGCTGTACGTAGCACGA
CGAGAGACAGTATCTACACGGCACTGTGTAGTGGCGATGGCTTGGAGAAA
CTCTACGAAACCCTAGGGATCGCGCGAAACATTCCATCTCTTTTCCCACG
TGCATCTACTCTTAAAACGATACAACGCCTTCTTCGTGGAAAACGTATTT
TGCTCAAGGTGTTTTCTTTTTGTGGGGAGAAATGGTGCATGGCAGCTTTT
GCCCTTTGCTTCTTCTGCGTCCGCGTGTTCCGTCATGTATCGTCGAGAAA
GTTGGACGCGGACAACCACCAACCGTCCGGGGGGCGTTGTTCCTGTGGCC
TGTCTGGCACGGATGGCAGATCTAAACGCCCCTCCGCCGTTCTCCCTCCT
CTCGTTTTCGTTTCTATTCCAGCTCTTGTGTCGCCTTCATCTTCTCGTGT
ACTTATATTTTCACTGTTGATTTGTTGCCCGGGGGAGTTCGACCACTGGC
GGCGTTTTTTAGGGCGGTTAGGCAAGGGtTTTTTTCTTCTTGAGGGTgGG
GGGGGTAGGGTAGAGGTGGTTCACACCAGACCCTTGATTCTTCTGCGCGG
TTTCTATCGCTTAATTTTCCACCAGATGGAGACACAGGTGATGTACTAAA
CACATTTCCGAGGCATCCTGTAGGTGATGACCAAATGAAGCACTTGTTTT
GGCCTTTTTTTGTTTTGTACTTGGTATATACTAAACTTGTACCATTTTTT
CATGCACGTTTTGTTTTCCGTGGGTCTTTCAGAGCGGAAATGTCGTTTTT
TCCAACTCCTATGTTTGGGTCGGGAGTCATATTCCCAGATGCTATAATGA
TATACATATACTGAGAATTTACAAAAAAAAACTTGCGGCGCGACTGGGAT
ACAGCAGTGGATGCGGCTTCATCCCTATAGTGTAAGACTTAATTGGAAAA
AGTGGGTATCAGGTTTCTTAAGAGGAGTCTGTCTGCTGGGGCGGACACTA
GACACACAGGGGGGGATGAGAAATTGGACGCCTTGTTACCGCGGTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig108:609776..611321+

>mRNA_F-serratus_M_contig108.765.1 ID=mRNA_F-serratus_M_contig108.765.1|Name=mRNA_F-serratus_M_contig108.765.1|organism=Fucus serratus male|type=CDS|length=1698bp|location=Sequence derived from alignment at F-serratus_M_contig108:609776..611321+ (Fucus serratus male)
ATGTTGATGCGGGGATGTGTTTCTCTCAACTACAGCTTTCAGCTGCCGCT
GCCCATCGTGTGTCAGGGTGTATTAGCCTGTCTCAGGTGCAGGGAAATGA
GTAGAAGATCGCAGGGGCGCGAGGATGGAGCGGGTGACGTGGTAGTGTGC
TCGATCGGGCGTGTTAGGTTTGCCTCATATTGTTCTTTGTTTGTTTTCGT
TTTCGCGCGTTGGCCTGTACCCATCTCCTGTGCTGCTGTACGTAGCACGA
CGAGAGACAGTATCTACACGGCACTGTGTAGTGGCGATGGCTTGGAGAAA
CTCTACGAAACCCTAGGGATCGCGCGAAACATTCCATCTCTTTTCCCACG
TGCATCTACTCTTAAAACGATACAACGCCTTCTTCGTGGAAAACGTATTT
TGCTCAAGGTGTTTTCTTTTTGTGGGGAGAAATGGTGCATGGCAGCTTTT
GCCCTTTGCTTCTTCTGCGTCCGCGTGTTCCGTCATGTATCGTCGAGAAA
GTTGGACGCGGACAACCACCAACCGTCCGGGGGGCGTTGTTCCTGTGGCC
TGTCTGGCACGGATGGCAGATCTAAACGCCCCTCCGCCGTTCTCCCTCCT
CTCGTTTTCGTTTCTATTCCAGCTCTTGTGTCGCCTTCATCTTCTCGTGT
ACTTATATTTTCACTGTTGATTTGTTGCCCGGGGGAGTTCGACCACTGGC
GGCGTTTTTTAGGGCGGTTAGGCAAGGGtTTTTTTCTTCTTGAGGGTgGG
GGGGGTAGGGTAGAGGTGGTTCACACCAGACCCTTGATTCTTCTGCGCGG
TTTCTATCGCTTAATTTTCCACCAGATGGAGACACAGGTGATGTACTAAA
TGTTGATGCGGGGATGTGTTTCTCTCAACTACAGCTTTCAGCTGCCGCTG
CCCATCGTGTGTCAGGGTGTATTAGCCTGTCTCAGGTGCAGGGAAATGAG
TAGAAGATCGCAGGGGCGCGAGGATGGAGCGGGTGACGTGGTAGTGTGCT
CGATCGGGCGTGTTAGGTTTGCCTCATATTGTTCTTTGTTTGTTTTCGTT
TTCGCGCGTTGGCCTGTACCCATCTCCTGTGCTGCTGTACGTAGCACGAC
GAGAGACAGTATCTACACGGCACTGTGTAGTGGCGATGGCTTGGAGAAAC
TCTACGAAACCCTAGGGATCGCGCGAAACATTCCATCTCTTTTCCCACGT
GCATCTACTCTTAAAACGATACAACGCCTTCTTCGTGGAAAACGTATTTT
GCTCAAGGTGTTTTCTTTTTGTGGGGAGAAATGGTGCATGGCAGCTTTTG
CCCTTTGCTTCTTCTGCGTCCGCGTGTTCCGTCATGTATCGTCGAGAAAG
TTGGACGCGGACAACCACCAACCGTCCGGGGGGCGTTGTTCCTGTGGCCT
GTCTGGCACGGATGGCAGATCTAAACGCCCCTCCGCCGTTCTCCCTCCTC
TCGTTTTCGTTTCTATTCCAGCTCTTGTGTCGCCTTCATCTTCTCGTGTA
CTTATATTTTCACTGTTGATTTGTTGCCCGGGGGAGTTCGACCACTGGCG
GCGTTTTTTAGGGCGGTTAGGCAAGGGtTTTTTTCTTCTTGAGGGTgGGG
GGGGTAGGGTAGAGGTGGTTCACACCAGACCCTTGATTCTTCTGCGCGGT
TTCTATCGCTTAATTTTCCACCAGATGGAGACACAGGTGATGTACTAA
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