mRNA_F-serratus_M_contig108.755.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig108.755.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE) HSP 1 Score: 426 bits (1094), Expect = 8.510e-130 Identity = 295/616 (47.89%), Postives = 363/616 (58.93%), Query Frame = 1
Query: 22 CNVLIEGDAYFEQNSAVR--AGAMYLDTAKAVVSGSVTFVNNTAER--------------------------WGGAVAVTDSDS----GLELNGRFXXXXXXXXXXXXXXXXXXARLAM------NTNGDEDVGALWQGNYAGYDGGAIAVDGGEVHLQGGFACSNTAAQRGGVIFATGDSLLSWTGG-ESWNNSAVFGGSLFISNSEANLTDVRLVGDHTPSGAVVFFADAEVRAINTSIVAPEELEGDFALHVDKNSVLMAFACSFEKWNGDNHAVLNEGILVLDACDFRQSTGATLFRAQRPATIRNAVLGNGNYASLGNNDS--FGFTASTCSTLSEAYSCLDNEQEDDCVDAEYGMGVLCTRYIAAATGAEVSLS-------GVG-SSIEVVTSSTXXXXXXXXSASLTGK------EVYFPELVVAELTLRYSGDGTTDGINGSWSSLEVTDTVVMGADAVLWELRSSDGTEYGGLPNSNRR---FAAVSADNFSWVAMPVSGVLVEGQEITINFVGTPPPPSDPSRPSAMYNGEVSAAFHVLSQTAKAGAAIVSSTASFKATFYYCGIGSYWDGQKCVLCVELMSAIVDGDGSLECDMPGVTLETLPLA 1695
C L EG +AV G MY+ KA ++GSV+F N +R GAV V DS GL L XXXXXXXXXXXXXX +A+ GDE GA W GN AGYDGG IAVDGG V L+GG A SN+A++RGGV+F G+S +SW+GG ESWNNSA GG++++S+S ANLTD+RL GDHTPSGA +FFA A+ RA+N + VAPEELE FALHVD S AFAC FE W+GD+ +VL+EG +VLD CDF S TL RA R TIRNAVLG+ N+ G N S G A CS+L E SC ++CVDAE GMGVLC + ATG VSL+ GVG S++E+V+S XXXXXXXX EVY+P+LV EL LRYS S + VLW L+ +DG GG ++ F + D F+W A+P SG LV GQE+TI VGTPPPP DPS A+YNGEV+A F V+++TA A +A S A + TFYYC GSYWDG+ CV C + M+ + DG+GSL+C PG+TL+TLPLA
Sbjct: 415 CLSLAEGATMDFSGNAVTEYGGGMYVVGCKASIAGSVSFRGNHGKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVCVIDSREDDGLGLRLXXXXXXXXXXXXXXXXXXYVVNGDVAVVRDATAAAGGDELPGASWVGNTAGYDGGVIAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFALHVDSGSAFRAFACVFEGWDGDSPSVLSEGEMVLDVCDFSGSGTPTLVRASRAVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSC---SVAEECVDAENGMGVLCPSFTEDATGGLVSLADVEDENDGVGFSTVELVSSXXXXXXXXXXXXXXXXXXXXXTAEVYYPDLVTHELVLRYSXXXXXXXXXXXGSQV-----------GVLWRLQRTDGD--GGAQAADDETGAFEGAAPDYFTWTAVPWSGYLVRGQEVTIQLVGTPPPPPDPSAVFAVYNGEVAAEFRVVTRTAAADSAAASVAAGVERTFYYCAAGSYWDGETCVTCAQAMATMADGEGSLDCSAPGITLDTLPLA 1014
BLAST of mRNA_F-serratus_M_contig108.755.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI) HSP 1 Score: 397 bits (1020), Expect = 7.070e-119 Identity = 288/616 (46.75%), Postives = 353/616 (57.31%), Query Frame = 1
Query: 22 CNVLIEGDAY-FEQNSAVR-AGAMYLDTAKAVVSGSVTFVNNTAER--------------------------WGGAVAVTDS--DSGLELN-------GRFXXXXXXXXXXXXXXXXXXARLAMNTNGDEDV-GALWQGNYAGYDGGAIAVDGGEVHLQGGFACSNTAAQRGGVIFATGDSLLSWTGG-ESWNNSAVFGGSLFISNSEANLTDVRLVGDHTPSGAVVFFADAEVRAINTSIVAPEELEGDFALHVDKNSVLMAFACSFEKWNGDNHAVLNEGILVLDACDFRQSTGATLFRAQRPATIRNAVLGNGNYASLGNNDS--FGFTASTCSTLSEAYSCLDNEQEDDCVDAEYGMGVLCTRYIAAATGAEVSLS-------GVG-SSIEVVTSSTXXXXXXXXSASLTGKEVYF------PELVVAELTLRYSGDGTTDGINGSWSSLEVTDTVVMGADAVLWELRSSDGTEYGGLPNSNRR---FAAVSADNFSWVAMPVSGVLVEGQEITINFVGTPPPPSDPSRPSAMYNGEVSAAFHVLSQTAKAGAAIVSSTASFKATFYYCGIGSYWDGQKCVLCVELMSAIVDGDGSLECDMPGVTLETLPLA 1695
C L EG F N+A G MY+ KA V+GSV+F N ER AV V DS D+GL L XXXXXXXXXXXX R A G E++ GA W GN AGYD AVDGG V L+GG A SN+A++RGGV+F G+S +SW+GG ESWNNSA GG++++S+S ANLTD+RL GDHTPSGA +FFA A+ RA+N + VAPEELE FALHVD S AFAC FE W+GD+ +V++EG +VLDACDF S TL RA R TIRNAVLG+ N+ G N S G A CS+L E SC ++CVDAE GMGVLC + AATG +L+ GVG S++E+V+S XXXXXXXX P+LV EL LR S VLW L+ +DG GG ++ F + DNF+W A+P SG LV GQE+TI VGTPPPP DPS P A+YNGEV+A F V+++TA A + S + TFYYC GSYW G+ CV C E+M+ DG+ SLEC +PGVTL+TLPLA
Sbjct: 413 CLFLAEGATMDFSGNAATEYGGGMYVVGCKASVAGSVSFRGNHGERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVYVVDSREDNGLGLRMXXXXXXXXXXXXXXXXXXXXXNGDVTVVRDATAAVGGEELPGASWVGNTAGYDXXXXAVDGGGVWLEGGLASSNSASERGGVLFGIGESNVSWSGGGESWNNSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFALHVDSGSAFRAFACVFEGWSGDSPSVVSEGDMVLDACDFSGSGTPTLVRASRTVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSC---SVPEECVDAENGMGVLCPSFTEAATGGLFTLADVEDEDDGVGFSTVELVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXPDLVTHELVLRXXXXXXXXXXXXXXGSQL----------GVLWRLQRTDGD--GGAQAADDETGAFEGAAPDNFAWTAVPWSGYLVRGQEVTIQLVGTPPPPPDPSAPFAVYNGEVAAKFRVVTRTAAADSVATSVATEVERTFYYCAAGSYWHGEACVACAEVMA---DGEDSLECSVPGVTLDTLPLA 1010 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig108.755.1 >prot_F-serratus_M_contig108.755.1 ID=prot_F-serratus_M_contig108.755.1|Name=mRNA_F-serratus_M_contig108.755.1|organism=Fucus serratus male|type=polypeptide|length=566bp GVHFSTGCNVLIEGDAYFEQNSAVRAGAMYLDTAKAVVSGSVTFVNNTAEback to top mRNA from alignment at F-serratus_M_contig108:202271..203970+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig108.755.1 ID=mRNA_F-serratus_M_contig108.755.1|Name=mRNA_F-serratus_M_contig108.755.1|organism=Fucus serratus male|type=mRNA|length=1700bp|location=Sequence derived from alignment at F-serratus_M_contig108:202271..203970+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig108:202271..203970+ >mRNA_F-serratus_M_contig108.755.1 ID=mRNA_F-serratus_M_contig108.755.1|Name=mRNA_F-serratus_M_contig108.755.1|organism=Fucus serratus male|type=CDS|length=3396bp|location=Sequence derived from alignment at F-serratus_M_contig108:202271..203970+ (Fucus serratus male)back to top |