|
Homology
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: D7FLU6_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU6_ECTSI) HSP 1 Score: 340 bits (873), Expect = 3.830e-109 Identity = 183/280 (65.36%), Postives = 218/280 (77.86%), Query Frame = 1
Query: 148 AFILAPTGCRGAL----LQRSKKSTHPLWAVR---ADAEDAMPSDVTPEFEPFNREVGSVAVAAEPDMSLANDLLQIISSGVGEGYIPYSEADKSAIEELVVELE-SSGEEADVQFPRDLSKLDGRWRLMFTNNLVGLGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKLLNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVFQRVA 963
AF+ A CR + S PL + ADA DA PSDV+P+ S A SLAN+LLQ + SGVGEGYIPYSEADKSAIEELVVELE SSG+ +VQFPRDL KLDGRWRL+FTNNLVGLG++SP+ LRDV+QVVD+++G ++NV Y +SPPLF+ETWGRLG+RA +A+TVE+RV+FPV+FNIQH FEV+SQSKPAQIELVQKELKL+N ED +RS+ALPALQPLAKAAAGRFDTT+L +DVR+SRGRFGE+RVFQR A
Sbjct: 19 AFVPALVSCRDGVRASHAHHRPSSASPLRSSSSSPADAVDAFPSDVSPD-------ASSSTPPASGGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDSAAGLVSNVVYATMSPPLFSETWGRLGERAAEIARTVEDRVTFPVNFNIQHNFEVSSQSKPAQIELVQKELKLMNAEDAAKRSLALPALQPLAKAAAGRFDTTYLDQDVRVSRGRFGELRVFQREA 291
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A836CAZ2_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ2_9STRA) HSP 1 Score: 221 bits (564), Expect = 1.530e-63 Identity = 109/221 (49.32%), Postives = 156/221 (70.59%), Query Frame = 1
Query: 298 GSVAVAAEPDMSLANDLLQIISSGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLMFTNNLVGLGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLG-QRAGSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKLLNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVFQR 957
GS + A E + + LL I SGVG+GY S + I++ +V+LE+SG + V+FP D + LDGRW+L++++N+ G+G++SPLTL +V+QVVDT+ ++ NV Y +SPPLF TWGR Q + AK V ER+SFPVDF + H FE+ S PAQ+++ KE K++N E P +RS+A+PA++PLA+ AG+FDTT++ D+RISRG GEIRVFQR
Sbjct: 48 GSSSSAYEDKLDAKSALLSAIGSGVGKGYYMTSRSAAKDIKKAIVDLETSGADMAVKFPSDFATLDGRWKLLYSSNIFGVGRLSPLTLDEVYQVVDTAGNSIKNVVYATLSPPLFETTWGRFPVQAVANAAKRVNERISFPVDFALDHTFEITSAEYPAQLKIALKETKIVNCEKPEQRSLAVPAIRPLAQIGAGKFDTTYMDDDLRISRGTLGEIRVFQR 268
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A5P1FNC1_ASPOF (PAP_fibrillin domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FNC1_ASPOF) HSP 1 Score: 65.1 bits (157), Expect = 7.180e-8 Identity = 76/246 (30.89%), Postives = 111/246 (45.12%), Query Frame = 1
Query: 265 TPEFEPFNREVGSVAVAAEPDMSLANDL-LQIIS--SGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLM----FTNNLVG-------LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKLL-NVED-PTRRSIALP-ALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
+P F+P G PD L L L+++S SG+ G + SE D E ELE G D+ +DL KL GRW+L+ F++ +G +G++ P+TLR VFQ +D S N+ D+ F W VE + + HKFE+ SK +I + +K N+ P LP AL+P + +G F+ T+L D RI+RG E+RVF
Sbjct: 53 SPSFDPLASTQG-------PDPELVAALKLKLLSAVSGLNRG-LAASEEDLKRAESAAKELEGVGGVVDLT--KDLDKLQGRWKLLYSSAFSSRTLGGSRPGPPIGRLLPITLRQVFQRIDILSKDFDNIV--DLQ---FGTPWP---------LPPVEATAT------LAHKFELIGTSK-IKITFEKTTVKATGNLSQLPPLEVPRLPDALRPPSNTGSGEFEVTYLDADTRITRGDRAELRVF 267
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A835AWW9_9POAL (PAP_fibrillin domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835AWW9_9POAL) HSP 1 Score: 65.9 bits (159), Expect = 1.220e-7 Identity = 83/288 (28.82%), Postives = 122/288 (42.36%), Query Frame = 1
Query: 121 LVIARELGSA-FILAPTGCRGALLQRSKKSTHPLWAVRADAE-DAMPSDVTPEFEPFNREVGSVAVAAEPDM--SLANDLLQIISSGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLMFTNNLVG----LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKL---LNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
LV R L SA + TG A R+++ L +VRA A P D T G+ + A+ D SL LL +S G+ G + +E D S + ELE++ V RDL KL GRWRL++++ G++ P+TL VFQ +D S N+ ++ P W V + HKFE+ S +I + +K L+ P L+P + +G F+ T+L D RI+RG GE+RVF
Sbjct: 177 LVTPRSLESAAWSAGTTGSNRAEQGRTRRRQ--LMSVRATAAAPXXPVDYT----------GNSSAGADADYVASLKVKLLSAVS-GLNRG-LAATEEDLSRADAAARELEAAAGGEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAP-----W---------------PLPPLEVTATLAHKFEIVGTSG-VKINFEKTTVKTKGSLSQLPPLEVPRMPDNLRPPSNTGSGEFEVTYLDGDTRITRGDRGELRVF 429
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A835ENR3_9POAL (PAP_fibrillin domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835ENR3_9POAL) HSP 1 Score: 64.7 bits (156), Expect = 2.640e-7 Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 1
Query: 364 SGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLMFTNNLVG----LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKL---LNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
SG+ G + SE D S + ELE++ V RDL KL GRWRL++++ G++ P+TL VFQ +D S N+ ++ P W V + HKFE+ S +I + +K L+ P L+P + +G F+ T+L D RI+RG GE+RVF
Sbjct: 229 SGLNRG-LAASEEDLSRADAAARELEAAAGGEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAP-----W---------------PLPPLEVTATLAHKFEIVGTSG-VKINFEKTTVKTKGSLSQLPPLEVPRIPDNLRPPSNTGSGEFEVTYLDGDTRITRGDRGELRVF 409
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A1E5W0X6_9POAL (Putative plastid-lipid-associated protein 6, chloroplastic n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5W0X6_9POAL) HSP 1 Score: 61.2 bits (147), Expect = 1.500e-6 Identity = 62/222 (27.93%), Postives = 95/222 (42.79%), Query Frame = 1
Query: 325 DMSLANDLLQIISSGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLM----FTNNLVG-------LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAKTVEERVSFPVDFNIQHKFEVASQS--KPAQIELVQKELKLLNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
D SL LL +S G+ G + S+ D + ELE++G V +DL KL GRWRL+ F++ +G G++ P+TL VFQ +D S N+ ++ P W A + + HKF++ S K + K L+ P L+P + +G F+ T+L D R++RG GE+RVF
Sbjct: 77 DPSLKVKLLSAVS-GLNRG-LAASQEDLQRADAAARELEAAGGGGPVDLSKDLDKLQGRWRLVYSSGFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAP-----WPLPPVEAVA---------------TLAHKFDIIGTSGIKITFEKTTVKTKGNLSQLPPLEVPRIPDNLRPPSNTGSGEFEVTYLDDDTRVTRGDKGELRVF 276
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: UPI001F5DA53E (plastid-lipid-associated protein 6, chloroplastic n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DA53E) HSP 1 Score: 60.5 bits (145), Expect = 2.490e-6 Identity = 60/213 (28.17%), Postives = 95/213 (44.60%), Query Frame = 1
Query: 349 LQIISSGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLM----FTNNLVG-------LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRA-GSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKLLNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
L I SG+ G + S+ D + +LE++ A V +DL KL GRWRL+ F++ +G G++ P+TL VFQ +D S N+ ++ P W A +LA E + + N K V ++ AQ+ L++ N+ PT + +G F+ T+L D R++RG GE+RVF
Sbjct: 76 LLIAVSGLNRGLVA-SQEDLERADAAARQLEAAAP-APVDLAKDLDKLQGRWRLVYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSEDFDNIVELELGAP-----WPLPPVEATATLAHKFEITGTASIKINFD-KTTVKTKGNLAQLPLLEVPRLPDNLRPPT------------SNTGSGEFEVTYLDDDTRVTRGDRGELRVF 268
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A3B6C222_WHEAT (PAP_fibrillin domain-containing protein n=10 Tax=Triticeae TaxID=147389 RepID=A0A3B6C222_WHEAT) HSP 1 Score: 57.8 bits (138), Expect = 2.030e-5 Identity = 63/219 (28.77%), Postives = 98/219 (44.75%), Query Frame = 1
Query: 331 SLANDLLQIISSGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLM----FTNNLVG-------LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRA-GSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKLLNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
SL LL ++ G+ G + S+ D + +LE++ A V +DL KL GRWRL+ F++ +G G++ P+TL VFQ +D S N+ ++ P W A +LA E + N K V ++ +Q+ L L++ + D R P + +G FD T+L D RI+RG GE+RVF
Sbjct: 76 SLKIKLLSAVA-GLNRG-LAASQEDLDRADAAARQLEAAAP-APVDLAKDLDKLQGRWRLVYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSQDFDNIVELELGAP-----WPLPPVEATATLAHKFEITGIASIKINFD-KTTVKTKGNLSQLPL----LEVPRLPDSLR--------PPASNTGSGEFDVTYLDDDTRITRGDRGELRVF 273
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A833VEG9_9POAL (Putative plastid-lipid-associated protein 6 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VEG9_9POAL) HSP 1 Score: 57.4 bits (137), Expect = 3.140e-5 Identity = 68/227 (29.96%), Postives = 96/227 (42.29%), Query Frame = 1
Query: 331 SLANDLLQIISSGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLMFTN-----NLVG------LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAKTVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKLLNVEDPTRRSIALP---------ALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
SL +LL IS G+ G + SE D E ELE+ G V +DL KL GRW+L++++ L G +G++ P+TL VFQ +D S N+ P W +E + + HKFEV S +I + +K PT LP ALQ + +G F+ T+ D RI+RG GE+RVF
Sbjct: 95 SLKLNLLSAIS-GLNRG-LAASEEDLKRAELAAKELEAEG--GIVDLTKDLDKLQGRWKLIYSSAYSSKTLGGSRPGPSIGRLLPITLGLVFQRIDVLSKDFDNIVELQFGTP-----WP---------IPPIEATAT------LAHKFEVIGTSN-IKINFEKTTVK------PTGSFSQLPPLDIPRLPDALQSSSNTGSGEFEVTYFDSDFRITRGDRGELRVF 290
BLAST of mRNA_F-serratus_M_contig1075.734.1 vs. uniprot
Match: A0A2P5FAI6_TREOI (Plastid lipid-associated protein/fibrillin conserved domain containing protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5FAI6_TREOI) HSP 1 Score: 57.4 bits (137), Expect = 3.210e-5 Identity = 61/214 (28.50%), Postives = 91/214 (42.52%), Query Frame = 1
Query: 361 SSGVGEGYIPYSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLM----FTNNLVG-------LGKISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAKTVEERVSFP---VDFNIQHKFEVASQSKPAQIELVQKELKL---LNVEDPTRRSIALPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVF 951
+SGV G + +E D E+ ELE G V +DL KL GRW+L+ F++ +G G++ P+TL V Q +D S N+ ++ P W FP V + HKFE+ S +I + +K L+ P L+P + +G F+ T+L D RI+RG GE+RVF
Sbjct: 107 ASGVNRG-LAANEEDLRKAEDAAKELE--GVAGKVDLSKDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVLQRIDILSKDFDNIVDLELGAP-----W------------------PFPPIEVTATLAHKFELIGTSS-IKITFEKTTVKATGNLSQLPPLELPRLPDGLRPPSNPGSGEFEVTYLDDDTRITRGDRGELRVF 293
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Viridiplantae |
Seed ortholog score | 77.4 |
Seed ortholog evalue | 1.2e-11 |
Seed eggNOG ortholog | 3218.PP1S80_119V6.2 |
Preferred name | HrBP1 |
Hectar predicted targeting category | signal peptide |
GOs | GO:0000302,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0010035,GO:0010193,GO:0010287,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042221,GO:0042493,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046677,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0071840,GO:0071944,GO:0098542,GO:1901700 |
EggNOG free text desc. | plastid-lipid-associated protein 6 |
EggNOG OGs | 2C4WE@1,2QVEU@2759,37HER@33090,3GEC8@35493 |
Ec32 ortholog description | Plastid lipid-associated protein/fibrillin conserved domain |
Ec32 ortholog | Ec-26_001200.1 |
COG Functional cat. | S |
Best tax level | Streptophyta |
Best eggNOG OG | NA|NA|NA |
Exons | 8 |
Model size | 2024 |
Cds size | 876 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928925.024763-UTR-F-serratus_M_contig1075:155444..155887 | 1622928925.024763-UTR-F-serratus_M_contig1075:155444..155887 | Fucus serratus male | UTR | F-serratus_M_contig1075 155445..155887 - |
1690962631.8557663-UTR-F-serratus_M_contig1075:155444..155887 | 1690962631.8557663-UTR-F-serratus_M_contig1075:155444..155887 | Fucus serratus male | UTR | F-serratus_M_contig1075 155445..155887 - |
1622928925.0361774-UTR-F-serratus_M_contig1075:155901..156516 | 1622928925.0361774-UTR-F-serratus_M_contig1075:155901..156516 | Fucus serratus male | UTR | F-serratus_M_contig1075 155902..156516 - |
1690962631.8682597-UTR-F-serratus_M_contig1075:155901..156516 | 1690962631.8682597-UTR-F-serratus_M_contig1075:155901..156516 | Fucus serratus male | UTR | F-serratus_M_contig1075 155902..156516 - |
1622928925.1602886-UTR-F-serratus_M_contig1075:163667..163757 | 1622928925.1602886-UTR-F-serratus_M_contig1075:163667..163757 | Fucus serratus male | UTR | F-serratus_M_contig1075 163668..163757 - |
1690962631.96887-UTR-F-serratus_M_contig1075:163667..163757 | 1690962631.96887-UTR-F-serratus_M_contig1075:163667..163757 | Fucus serratus male | UTR | F-serratus_M_contig1075 163668..163757 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928925.0539036-CDS-F-serratus_M_contig1075:156516..156708 | 1622928925.0539036-CDS-F-serratus_M_contig1075:156516..156708 | Fucus serratus male | CDS | F-serratus_M_contig1075 156517..156708 - |
1690962631.8842554-CDS-F-serratus_M_contig1075:156516..156708 | 1690962631.8842554-CDS-F-serratus_M_contig1075:156516..156708 | Fucus serratus male | CDS | F-serratus_M_contig1075 156517..156708 - |
1622928925.069819-CDS-F-serratus_M_contig1075:157170..157301 | 1622928925.069819-CDS-F-serratus_M_contig1075:157170..157301 | Fucus serratus male | CDS | F-serratus_M_contig1075 157171..157301 - |
1690962631.8953779-CDS-F-serratus_M_contig1075:157170..157301 | 1690962631.8953779-CDS-F-serratus_M_contig1075:157170..157301 | Fucus serratus male | CDS | F-serratus_M_contig1075 157171..157301 - |
1622928925.0840323-CDS-F-serratus_M_contig1075:157655..157722 | 1622928925.0840323-CDS-F-serratus_M_contig1075:157655..157722 | Fucus serratus male | CDS | F-serratus_M_contig1075 157656..157722 - |
1690962631.9163554-CDS-F-serratus_M_contig1075:157655..157722 | 1690962631.9163554-CDS-F-serratus_M_contig1075:157655..157722 | Fucus serratus male | CDS | F-serratus_M_contig1075 157656..157722 - |
1622928925.095422-CDS-F-serratus_M_contig1075:158259..158359 | 1622928925.095422-CDS-F-serratus_M_contig1075:158259..158359 | Fucus serratus male | CDS | F-serratus_M_contig1075 158260..158359 - |
1690962631.9297283-CDS-F-serratus_M_contig1075:158259..158359 | 1690962631.9297283-CDS-F-serratus_M_contig1075:158259..158359 | Fucus serratus male | CDS | F-serratus_M_contig1075 158260..158359 - |
1622928925.1100657-CDS-F-serratus_M_contig1075:158729..158795 | 1622928925.1100657-CDS-F-serratus_M_contig1075:158729..158795 | Fucus serratus male | CDS | F-serratus_M_contig1075 158730..158795 - |
1690962631.940601-CDS-F-serratus_M_contig1075:158729..158795 | 1690962631.940601-CDS-F-serratus_M_contig1075:158729..158795 | Fucus serratus male | CDS | F-serratus_M_contig1075 158730..158795 - |
1622928925.12738-CDS-F-serratus_M_contig1075:159246..159463 | 1622928925.12738-CDS-F-serratus_M_contig1075:159246..159463 | Fucus serratus male | CDS | F-serratus_M_contig1075 159247..159463 - |
1690962631.9502425-CDS-F-serratus_M_contig1075:159246..159463 | 1690962631.9502425-CDS-F-serratus_M_contig1075:159246..159463 | Fucus serratus male | CDS | F-serratus_M_contig1075 159247..159463 - |
1622928925.1436374-CDS-F-serratus_M_contig1075:163564..163667 | 1622928925.1436374-CDS-F-serratus_M_contig1075:163564..163667 | Fucus serratus male | CDS | F-serratus_M_contig1075 163565..163667 - |
1690962631.9589386-CDS-F-serratus_M_contig1075:163564..163667 | 1690962631.9589386-CDS-F-serratus_M_contig1075:163564..163667 | Fucus serratus male | CDS | F-serratus_M_contig1075 163565..163667 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1075.734.1 >prot_F-serratus_M_contig1075.734.1 ID=prot_F-serratus_M_contig1075.734.1|Name=mRNA_F-serratus_M_contig1075.734.1|organism=Fucus serratus male|type=polypeptide|length=292bp
MKISLASIVTLVIARELGSAFILAPTGCRGALLQRSKKSTHPLWAVRADA EDAMPSDVTPEFEPFNREVGSVAVAAEPDMSLANDLLQIISSGVGEGYIP YSEADKSAIEELVVELESSGEEADVQFPRDLSKLDGRWRLMFTNNLVGLG KISPLTLRDVFQVVDTSSGTLTNVAYGDISPPLFAETWGRLGQRAGSLAK TVEERVSFPVDFNIQHKFEVASQSKPAQIELVQKELKLLNVEDPTRRSIA LPALQPLAKAAAGRFDTTFLGKDVRISRGRFGEIRVFQRVA* back to topmRNA from alignment at F-serratus_M_contig1075:155445..163757- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1075.734.1 ID=mRNA_F-serratus_M_contig1075.734.1|Name=mRNA_F-serratus_M_contig1075.734.1|organism=Fucus serratus male|type=mRNA|length=8313bp|location=Sequence derived from alignment at F-serratus_M_contig1075:155445..163757- (Fucus serratus male) TCCAAACATCAAACTCCATAAAAGTTGGTCTCCTGCTTGGCGGAGCCACC
GTCCACCGCCCGTGGGGTTACGTAAGAACGGGTAACGGCTATGAAGATCA
GTCTAGCCTCGATCGTGACTCTGGTAATTGCTAGGGAATTGGGCAGCGCC
TTCATACTCGCTCCGACCGGCTGCCGAGGGGCTTTGCTGCAAAGTAAGGC
CGCATCGTGAAAGGTCGAATCATGAAACCCTAACCCTTGTACATAGCTGA
GATAGGCATGTTGTTGCGTCGTAGGCAACAGACCCCCTCGTCACAAAGTT
TCCCATGTCTTGCTCACTTAAAGACATCTGAGTCGGGCTTGTTTGAAGAA
CTGTCTTTTTAAAGAAAATCGGCACAGCACCTAGACCTTTTGAGCATCCC
CCGGTTAGTGTCCTTCCACAGTAGACTAGCGGACTAGCTCTAATACTCAG
TATTAATATAATAGTAACAAGAGAGACAAAAAGTGAAGGTCTAGGTGCGT
TCTGTACAAACAGCAAGTACTCCGACAGTCTTGTCTGTATCTTGTACCTC
AGATTCTGAAATACTGGCAGCATTGAAGTCGGTCGCCCAGGTTGTTCAGT
TGGTAACCTCGAAACCTTCTGACGTTGGGACGTGAGTTCGAATCTCGGTG
CCGTCACACGAACATAAATAAATAAATAAAAGTGCCCCGCATGTGGTGAA
CGATTAAATCGTTAAGACACAAATTGCAAAATTCGACTTGACGGTCGACG
AGGGAAAAAAATGGTTGATTCCTTTTCGCGAGAAAAATTAGGGTAAGCAC
CGCAGGAGAAGGAGAAATCCTCTGAGATCTTCCCCGTTCATGACCCCGGC
TGGTACGTCCACAAACCTGACGTCCAGAATACTACTAAATGGGAGGACGA
CACACACACACACATACAAACACTACTGAGAGGGTTAAAAGTTGAAAGTT
GTAATTGGTAAACAATGACTGACGCGGATAAGTTTCCGATGTCTTATTAA
TAGGGTAATTCGACCTGGCAAGATTTTTCCCTTTTTTTCGCGATTTGGAT
CCCTTTTGGTTTTGAGTAGCAGGCTGTCACCATGGTATGACCCGTTGACC
TCCGTACCTCTTCTGTGGCACCGTGGTTTCTGGTGTTTGTTGCAAGGACA
ATAGCTTCAATGTGTGATCAACAACACTAATCGCCATCAGGTACACCAAA
ATAGAGGCAAAAACACACGATAAATCTACAACTAAAGTTACTTCAGTATG
TATGTATGCATGGTCATCACATACAGCGAGAGAAGGATCAGCCGGGTGAG
GTTGCCAATCCTGCCCGTGGTCAGCTGAGCAGGGAAAATGAATATTTTCC
TGTTCCCGTTCGCGCCTGAGAATTCGGTCTCGTGAGACGGGTTCGGCCGT
CCCGTCCCGCGTCAGCCTGCTCATTCTCCGCACTCAGGCTTAACGGGGCC
CCTTTTTCCTATAAGAATAGAACACCTCGTTTATATGAAATTTTTATGTT
ACGGTTCGTCAAAAGGTTGTTAAGGGCATATAAATATCGGCAGCTCCGCC
CCTGATTGGCCAAGAACGGCCCAGAAACATTCCGACACCTCTACAACATT
TAAAAAATAGGTTGATCGATACTACAAGAAAGGCGTGACTACGGGCGTTT
TTGCCTTAAAAGTATAATTTTGGTATCAGCAATATGAGGTATGAGCAACC
AGCTGTCCCTATGGCCACATGTTCCAAGCGCAAGAGTGTATAGTCATGTA
TCTTATTCAGTAGGAAGGTTTGGGCTTCGAAGGTCATGTACCGAGGTTCG
GCGACCGACTTGTTGGTAGTTTTGTGCAAACCCGGGAATCCCACCACAAA
TACCACAGAAAGGTGACTAGACATATGCAGACAACTTTCTTCGGCTTAGT
AGCACGTAGAAGGTTGTCCTCTTCGGAGGGTGCTCCAGAAGAGTTTGGGG
AGGTCTGCTGAGCAAAACCGCGGTCTCGGAGGCGATATCAGGCTCAAGAG
CGGCCCATACCTGGTTCTGTTCGTACTGCTGCATGACGGGAGACCTGGCT
CGGGCCGACCAAGCACAATTCTCGAAAATATATCGCCACAAGAGATATAC
TGGTATCTACTAAGCTCGCACCAAAGTCTGCAGTGTTTACCATGTGCTAC
GCAATTGCACACCCGGCGACACGGCAGCCTACCTGCACCGAGCTCTATCG
GGGGCCATGGGTCACAGGAGGTGTTTAAAGGGTTATGACCGTGGTCCAAA
TAGTATAATGAGAAACAACGCGGAATAATGCTGGGCTCCGAGACGATTTC
CTTGGTATCGTGCCACATGACCTACAACTCCCCCCCCCAAGGCCAATAGG
CCTGAGTTATAGAATCACGTATGTCCCTTGCAGAGGTGCCATGGCGCCGT
GGTTGCTCCGTTATCCGAGGTGCCCAAAGAGGGCTCTTCAGTTTTCTCTC
TATTTTCTTCAATAAAGCAATTTTGGCCTCCCTTCCATTGGCTAGTAGCT
ACAGTCATGTGGCTGTTTCATCAGTAATTTGTGCCCAAAATATTTGTTTT
TCGGCCCAAACGCGTGGGTTACTCTCGGAATTCCTTCCGCTTCCCGCGGC
GGCGTCCATTTATATATACCGCCAACCGCCATCGGGTCAGTCCCGAGTTT
ATCGGGTCACCCAAGTGCGTACCGCTGACGTTCACTATCGAGAGTCCGCC
GGCACAAGGCCTGTAGTCCTCAAGGTAGTTTCAGTAACGGGTGCTGCCTT
TGCATCACGATGGACCAATCAATGTGCGCCTCTGTTTTCCCACACCCGCT
ATTGGTCGTGAAGTGGGCATGTTGAAAGTATCGATAGTACAAGCCTAATT
GCCAAGTATTTTGTACCAGGTAACAATTATTACAGTAGACTAGTCTAAAT
CAATATTTATTACTTAGGAAAAAGGAAGGTGTACTGTTATAGTCTAGCCG
TCTACCTAGTAGTATTTTGTATATATTCTTTATGGAGAGCTATTAATGAC
ATTATACACTATGATATCGGGGAGAGGGAGGGCTACAGGCACCGCTCAGT
AAGGCCCTCAACATTATCCAGATACTGTACACGAGACACTGTCATAATAA
TAGTGTGCTGTAACGGTTGTTCCGTTTCTGATTATTATACTTAATACTGT
CACTGTACTGTTTGTATGGATTTTCGAAGTAATGTATCTAATGTGTAGCA
TATCTTGCAAATCGGTCTACTTTAGCTGCCGCGGAGCTCGGGAGGAATCC
CGTATGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACG
CGGGACGGGACTGCCGAACCCATCCCGCGAGACCAAATTCTCAGGCGCGA
AGGGGGACCTCATTTTCCTGTCCCCTTTCGCGCCATGAAAATTTGATCTC
GCGAGATAGGTTCGGCCGTCCCGTCCCGCGCCAGCTTGCTTGTTCCCTAC
ACTCAGGCTAAACCTTGTACTTACTCGCGGGATTCCTCCCGAGTTCCGCG
GCGGCGTCCATTTATTTATTCAAATATCCATAAGCCATCGGGTTCGTCCC
GAGCTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAG
TCCGCCGGCACAGGGCCAGTAGTCCTCAAGGTATTTCAGTAACGGGTGCT
GCCCTTGCATCACCATGGACTATGACCAATTAATGTGCGCCTCTCTTTTT
CTCACACCCACTATACTATTATTGGTATGAAATGGGCATGTTGAAAGTAT
CGAATACTCCGTATATACCAGGTGCTAAATGGGTAGCACCGTATTAAGAG
TCACTACTCGTATGGTTCATAGAGTAGCTTGTATGCGTTGATTTTATCTT
AATATAAAAGCATAGCAATAGGTACAGCGCCATGCGTAGACATCCACACA
CGTTCGTAGGTACCAGTTGATACTGTTATTAATAATAGTTATATAGAAGT
AAATGTTAACAATCGTAGCTGCTCGTATCGATAGTGAACTGTACTACAAA
GACTGTACAATAAATACAGTACTATTAGTACTGTAGTGTACTACTGTACA
CGGTAAAACATTCGGCAACCTAGAGGCGGGGCGGTTGAGCTGTGTGTCCT
GCCTCTCGCTTTCGCTCGGCCCTTTTTTCTCAATCCATCTCCGATCGCTC
GGTTGTTGGCGCAACACAGCTATCCGTTCTTGTCAGATCCTTGACACATC
GACCGCAGCATACGGAACATCATTGATATCTGACATAGAGAAAGGTCCTC
GACACGTGATCCTTCCCTTGTGTGCATCGCGTGATCCGACGCAGGATCGA
AAAAGTCGACTCACCCGCTATGGGCGGTGCGGGCTGACGCGGAAGACGCC
ATGCCCTCGGACGTCACGCCCGAGTTCGAACCTTTTAATAGGGAAGTAGG
CAGCGTCGCCGTCGCCGCAGAACCAGACATGAGCTTGGCCAATGACCTCT
TGCAGATAATTTCGTCAGGCGTCGGAGAGGGCTATATTCCTTACTCAGAG
GCCGACAAAAGGTTCGGGTCCTATGGGATGTGGGATGGGGGATACCGGCC
TCGATGGCAAGCAAAAAAATGGTGTCGCGGTGGCTGTCTTCTGCTCGGCG
GAGACAAATGAAAATTGACCGCTTTGTTGGAGACCAGTAGCCGGCAATTT
TTGAGGGGCAATCTTAATTGATTGAATTCTCACATAATAATAGACTGAAT
ATCATGTCAAAATCCAAGCCCGTGGTCTCAAAGGTAAAAAAAAATCCATG
CGGAAGGAAAAAACAAACTGACATTTCAGCAGGGGAACGATATTCATAGC
TGCTGTTGGTGCCACTGTTGCTGCTGTCAGTCACTCGGCTTGGGCATGTG
TCGTGGGGTGTGTGCGGTAGGTTAAGCATCGGAAACCCTCATTTGCGGGA
CACAAAAACTTGCCGCCCCACACGACCTTTTGCTTTGCGACACGTTTCTG
ACCCGTTGCCAGCGCGATTGAGGAGTTGGTGGTCGAGCTGGAATCGTCGG
GCGAGGAAGCCGACGTGCAGTTTCCAAGGTACTGTACGCACCCAACCTAA
CTTGGCTTCTTTTGTCCTCGCTAATAACATATACTGTGGAGATAATAGCA
GACAAGGGCGTCTCGCGTGACCGTGCTCAAAAAGGAAAGGTATTCTGCGT
GACCGTGTCGTGGTAAGCCGCGGCGGGGGGAAATGGCGTGCAGGAGGGAC
ATATCGAGATAGATTCGCATCCTCTTAAAAAGTGTGTAGGGCTTGAACTA
TTAATACATACAGCAGCCACAGGTGTAATTCTACTTCACGGCGGGCTATC
GACTCTTCTGCTTCTTGGTCGCGGCTTCAAACTATAATATTGAACTGTAA
TGTGAATACGGTTGCCTACTATTCCGGTACCTGCGTGCGCGTTTCAAGGG
ATCTGTCGAAACTCGACGGCCGCTGGAGGCTCATGTTCACCAACAACTTG
GTCGGCCTGGGGAAGATTTCGCCTCTGACTCTCAGGGACGTGTTTCAGGC
GAGATATACTAGAAATTTTTATTAGTGTGCTGGCGGTCTGTATCCCTGTA
TACCGCGGACAAGGCACACTATTAATACTATTACTAGCTTGCTACTCGTA
TCGCTGTTGATGCCCGCTATCTTCGTTCTTCTGCGCGGCCAGGTGTATTG
CGAGAGAGCTGATTTCGACCCCCTTGCTTCCGGCGGGCGTTCCCGATATC
TTGGTATCTTTATATCCTTGTATCTTGGCATCTTTGTATTACCACCACGT
CGTTAAGATCAACTTCACCATCTTACAATCTCACTCAATAGTCGGTGCGG
TGCACACAGCTCACAGCACACAGCATAGCCGCCGCGCGGCGGAGGGGGTA
GAGACAAGAACCCGAGAAACGCAACTTCCCACCTGAGATACTGAGTCGCC
CGATACAGTTTACTTCGTGCTTGTTGTGTCTTATCAGCCCCGATGTGTTT
TTGGCGTAGATTGCGCCCCCTTCTTCTCCCCTGAAACATCCGCCGACGCT
GACGCCGACACCGACACTCTTGTCTCGAACAAAAGGTGGTGGATACTTCC
TCTGGGACCTTAACTAACGTAGCCTATGGCGACATTTCTCCCCCGCTCTT
CGGTAAGACCAATGGTACTGCAGGGATGATGACGAAATACTTGTACAGGT
TGCAGGAGGAGTTCCATTGTCTTATTTTGAGGCGTCGTACGGAAGGCCGA
TTAGCCGACAGTACTTCATGACGTCTGGGGGGAAGGTTGGGCGAGGCACC
AGTAATACGTCACTACTGTGGTATGGTATTTAGTATGGTCCAAATAATTT
CCATGCAGCACCGCGCTTGGAAGCGTAATCAGAGGTCCCGACAACGATTT
TACTCTTAGAATACATGTAATGTAGAAAGCCTCGTGAAACCGTTGCAATG
TTATAGAAGTATAACACGAGTTAACCGTGCAAACGATCGATGGATTTACG
GGGCAGCGGAGACTTGGGGGCGATTGGGACAACGCGCGGGAAGCCTCGCC
AAGACCGTGGAAGAACGGGTTTCCTTTCCTGTGGACTTCAACATCCAGCA
CAAGTTCGAGGTGGCGTCGCAATCCAAGCCTGCGCAGGTGCCGTACTGGC
GACGGCTAATCCCGTTTCGTCGACGCAATCCACCCCCCCCCCCCTTGAAC
TTGACGCGTCAAAGAAAGATGTCAAGATATGAAGATTTGGTCCGTGTCCA
CGGTGTCCCCCTTTCCCTATCCCAAATCCAATTCAACAGTTTTCTACTTG
AGAGTACCAAGCCTATCCAATCTACCCAAAATAGCCATTATGTTAGTCTA
TAAATAAAGGGTTGAAAAAGAACAGGAAGATAACGCTGTTGTCTTGAAAG
CACACGTCCTGAGACACTCGCTGCCCTGAAATGTCAAAATCTCAATTTTT
CGTCTGTTTCGTCACGCGGAGACACGTGCGCCTTGGGCCGTCGCCCCGGT
GATATCCGCCGCTGCCTCGTACTTGCACAGAAGGACACGAACTAACTCTC
CTTTCCCATGCCGCGCCTTGTTTGAACCCGTCTTCACGATTCTCGGAAGA
TCGAGTTAGTCCAGAAGGAGCTCAAGCTGCTAAACGTCGAGGACCCGACC
AGGCGTTCGATTGCTCTTCCGGCGTTGCAGCCGCTGGCAAAGGCGGCCGC
GGGTCGGTTTGACACGACGTTCCTCGGCAAGGACGTGCGCATAAGTCGCG
GGCGATTCGGAGAGATCCGGGTGTTTCAACGCGTGGCGTAAGCATATTAC
CCATGCCGTACCTGTTGTCACTGTAAGGCTTAGAGAGAGGGGGATGATTG
TTCGCTACCTTGGGAGGCGGAGGGGAGGGGGGGAAAGGGTATGACAAGTG
GAAATAACTTGGATTTCGCTATATCATGAGTTGTCGTGGACCTCTTTCTG
CCTATTAACGGGGGGGACGCACATGTTTTTTGAAGCCTGTCTATTTACGT
TGATGCTATTGATACAGCTGTAATGATAATCGTATCTGGATGAGTGTCCC
TACAGAAACACTAGGGAATGATTTTGAACGCTGCTGATGGCATTGTTTCG
AAAATATGTTGTAGTTGTGTACTTTGTATTCAGTCTCTCCCTTTTATCTT
TTATGGCTCACTTGTTCTTTCAAGACGTGTACCGGGGAAAAATGCCACCA
CAAATGATTTTGGTACACACGGTAGATAGGCTCTAAATGCACAATCAAGT
TGTTACGTGTCGTATACAGAGATAGAGAGGGAACACAACCGGATGTTTTG
TTTTCCATATGTGAGAATGCGGCGGAACACCTTGATCGGTTTCAGGCGAC
GCCTTCCCCTCAAGATACTGTTTTTCCCGTCCAAGGGCATAGCGAGCGGT
AGACTTGTTACTTTTTAAAGACTTGTTAATGTTTAAATAAAAGTATGAAC
ACATCTAGAATCTAGACCTTCTGAGCATCCCCCAGTCAGGGAGGAAAATG
TCAAAATGTTTAGGTAAGATGTTTATCTCACATTTACTGATCCGCTGCGA
ATCTAGCAAGATAGACGGAACCACACCAGCTCAAACCGGGAACACGCCTG
TCGACACGGAATAAAAGCGTTTCGCTTGAGAAGGCCATGATGCCGCGATA
GTTAGTACTCCGATTGGAACAGAGCCTCGGCAGAATGAAACATGGCCAAG
CCGATGGAGGCGGCGAGGAGGTTGATCCGCAGTGCCACATTGCGTTGAGA
GAAAGAGAGACAGAGCAGGCAGGCCGCGGCTGCAGCAGCGAAAAAGGACA
AGCGTTCAGTTTTTGTGTTCCTTTGAGGTGGTGCCAGATAACCCGTGGCT
CACCAGAGCCCTG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1075:155445..163757- >mRNA_F-serratus_M_contig1075.734.1 ID=mRNA_F-serratus_M_contig1075.734.1|Name=mRNA_F-serratus_M_contig1075.734.1|organism=Fucus serratus male|type=CDS|length=1752bp|location=Sequence derived from alignment at F-serratus_M_contig1075:155445..163757- (Fucus serratus male) ATGAAGATCAGTCTAGCCTCGATCGTGACTCTGGTAATTGCTAGGGAATT GGGCAGCGCCTTCATACTCGCTCCGACCGGCTGCCGAGGGGCTTTGCTGC AAAATGAAGATCAGTCTAGCCTCGATCGTGACTCTGGTAATTGCTAGGGA ATTGGGCAGCGCCTTCATACTCGCTCCGACCGGCTGCCGAGGGGCTTTGC TGCAAAGATCGAAAAAGTCGACTCACCCGCTATGGGCGGTGCGGGCTGAC GCGGAAGACGCCATGCCCTCGGACGTCACGCCCGAGTTCGAACCTTTTAA TAGGGAAGTAGGCAGCGTCGCCGTCGCCGCAGAACCAGACATGAGCTTGG CCAATGACCTCTTGCAGATAATTTCGTCAGGCGTCGGAGAGGGCTATATT CCTTACTCAGAGGCCGACAAAAGGATCGAAAAAGTCGACTCACCCGCTAT GGGCGGTGCGGGCTGACGCGGAAGACGCCATGCCCTCGGACGTCACGCCC GAGTTCGAACCTTTTAATAGGGAAGTAGGCAGCGTCGCCGTCGCCGCAGA ACCAGACATGAGCTTGGCCAATGACCTCTTGCAGATAATTTCGTCAGGCG TCGGAGAGGGCTATATTCCTTACTCAGAGGCCGACAAAAGCGCGATTGAG GAGTTGGTGGTCGAGCTGGAATCGTCGGGCGAGGAAGCCGACGTGCAGTT TCCAAGCGCGATTGAGGAGTTGGTGGTCGAGCTGGAATCGTCGGGCGAGG AAGCCGACGTGCAGTTTCCAAGGGATCTGTCGAAACTCGACGGCCGCTGG AGGCTCATGTTCACCAACAACTTGGTCGGCCTGGGGAAGATTTCGCCTCT GACTCTCAGGGACGTGTTTCAGGGATCTGTCGAAACTCGACGGCCGCTGG AGGCTCATGTTCACCAACAACTTGGTCGGCCTGGGGAAGATTTCGCCTCT GACTCTCAGGGACGTGTTTCAGGTGGTGGATACTTCCTCTGGGACCTTAA CTAACGTAGCCTATGGCGACATTTCTCCCCCGCTCTTCGGTGGTGGATAC TTCCTCTGGGACCTTAACTAACGTAGCCTATGGCGACATTTCTCCCCCGC TCTTCGCGGAGACTTGGGGGCGATTGGGACAACGCGCGGGAAGCCTCGCC AAGACCGTGGAAGAACGGGTTTCCTTTCCTGTGGACTTCAACATCCAGCA CAAGTTCGAGGTGGCGTCGCAATCCAAGCCTGCGCAGCGGAGACTTGGGG GCGATTGGGACAACGCGCGGGAAGCCTCGCCAAGACCGTGGAAGAACGGG TTTCCTTTCCTGTGGACTTCAACATCCAGCACAAGTTCGAGGTGGCGTCG CAATCCAAGCCTGCGCAGATCGAGTTAGTCCAGAAGGAGCTCAAGCTGCT AAACGTCGAGGACCCGACCAGGCGTTCGATTGCTCTTCCGGCGTTGCAGC CGCTGGCAAAGGCGGCCGCGGGTCGGTTTGACACGACGTTCCTCGGCAAG GACGTGCGCATAAGTCGCGGGCGATTCGGAGAGATCCGGGTGTTTCAACG CGTGGCGTAAATCGAGTTAGTCCAGAAGGAGCTCAAGCTGCTAAACGTCG AGGACCCGACCAGGCGTTCGATTGCTCTTCCGGCGTTGCAGCCGCTGGCA AAGGCGGCCGCGGGTCGGTTTGACACGACGTTCCTCGGCAAGGACGTGCG CATAAGTCGCGGGCGATTCGGAGAGATCCGGGTGTTTCAACGCGTGGCGT AA back to top
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