mRNA_F-serratus_M_contig1075.721.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1075.721.1
Unique NamemRNA_F-serratus_M_contig1075.721.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1075.721.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.530e-14
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   40 GSQRGIFLGPDKPHRAKHENKCRKRFSGLLSCEELTGMNLNPYEQNHSKNTKQLPNLSR----NMMMMTNLIDAAGDRSINQST 279
            G + G++L PD PH   H+ KC+++F GL  C +LTG+N N +EQNHSKN K LP+++           NLI+ +  R IN+ T
Sbjct:  507 GKRVGLWLAPDGPHEGNHQGKCQEKFGGLARCPQLTGVNCNAHEQNHSKNKKHLPSVNGMGFDTFNFNVNLINESEHRGINRKT 590
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BLAST of mRNA_F-serratus_M_contig1075.721.1 vs. uniprot
Match: A0A6H5JBW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.080e-13
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   40 GSQRGIFLGPDKPHRAKHENKCRKRFSGLLSCEELTGMNLNPYEQNHSKNTKQLPNLS 213
            G + G++LGPD PH   H+  C+ ++ G+  C +LTG+N N +EQNHSK TK LP++S
Sbjct:   75 GQRVGLWLGPDGPHEGNHQGSCQMKYGGVSRCPQLTGVNCNVHEQNHSKKTKHLPSVS 132
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BLAST of mRNA_F-serratus_M_contig1075.721.1 vs. uniprot
Match: A0A6H5JU18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU18_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.580e-8
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   43 SQRGIFLGPDKPHRAKHENKCRKRFSGLLSCEELTGMNLNPYEQNHSKNTKQLPNLS----RNMMMMTNLIDAAGDRSINQ----STARRV 291
            S  G + GPD  H   H +  R+++ G+ SC +L+G+NLN YEQNH+K  K L  L+         M  LI+   + +IN+    +T +RV
Sbjct:  104 SNAGPYYGPDTLHDCNHGDDSRQKYGGIDSCAQLSGVNLNAYEQNHAKKKKFLRTLNVMKFDRFAFMVTLINETKNEAINRESVANTVKRV 194
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1075.721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5W4_9PHAE1.530e-1442.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBW4_9PHAE3.080e-1348.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU18_9PHAE5.580e-836.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1075contigF-serratus_M_contig1075:27871..28184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_009810.2
Exons1
Model size316
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.505196-CDS-F-serratus_M_contig1075:27870..281821622928923.505196-CDS-F-serratus_M_contig1075:27870..28182Fucus serratus maleCDSF-serratus_M_contig1075 27871..28182 +
1690962631.1100874-CDS-F-serratus_M_contig1075:27870..281821690962631.1100874-CDS-F-serratus_M_contig1075:27870..28182Fucus serratus maleCDSF-serratus_M_contig1075 27871..28182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1075.721.1prot_F-serratus_M_contig1075.721.1Fucus serratus malepolypeptideF-serratus_M_contig1075 27871..28182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1075.721.1

>prot_F-serratus_M_contig1075.721.1 ID=prot_F-serratus_M_contig1075.721.1|Name=mRNA_F-serratus_M_contig1075.721.1|organism=Fucus serratus male|type=polypeptide|length=104bp
SVEVEGRPDTPNTGSQRGIFLGPDKPHRAKHENKCRKRFSGLLSCEELTG
MNLNPYEQNHSKNTKQLPNLSRNMMMMTNLIDAAGDRSINQSTARRVASP
WVEG
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mRNA from alignment at F-serratus_M_contig1075:27871..28184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1075.721.1 ID=mRNA_F-serratus_M_contig1075.721.1|Name=mRNA_F-serratus_M_contig1075.721.1|organism=Fucus serratus male|type=mRNA|length=314bp|location=Sequence derived from alignment at F-serratus_M_contig1075:27871..28184+ (Fucus serratus male)
TCTGTCGAGGTCGAAGGACGACCGGACACCCCTAATACAGGATCGCAACG
CGGGATCTTCTTGGGGCCGGACAAGCCTCATAGAGCGAAGCATGAAAATA
AATGCCGCAAGCGATTCAGCGGTTTGCTTTCATGTGAGGAACTCACGGGG
ATGAACCTGAACCCGTACGAGCAAAACCACTCGAAGAACACCAAGCAGCT
TCCAAATCTTTCACGCAACATGATGATGATGACGAACCTCATCGACGCGG
CGGGGGACCGATCAATCAACCAATCAACCGCACGACGTGTGGCCTCGCCG
TGGGTTGAGGGATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1075:27871..28184+

>mRNA_F-serratus_M_contig1075.721.1 ID=mRNA_F-serratus_M_contig1075.721.1|Name=mRNA_F-serratus_M_contig1075.721.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig1075:27871..28184+ (Fucus serratus male)
TCTGTCGAGGTCGAAGGACGACCGGACACCCCTAATACAGGATCGCAACG
CGGGATCTTCTTGGGGCCGGACAAGCCTCATAGAGCGAAGCATGAAAATA
AATGCCGCAAGCGATTCAGCGGTTTGCTTTCATGTGAGGAACTCACGGGG
ATGAACCTGAACCCGTACGAGCAAAACCACTCGAAGAACACCAAGCAGCT
TCCAAATCTTTCACGCAACATGATGATGATGACGAACCTCATCGACGCGG
CGGGGGACCGATCAATCAACCAATCAACCGCACGACGTGTGGCCTCGCCG
TGGGTTGAGGGATCTGTCGAGGTCGAAGGACGACCGGACACCCCTAATAC
AGGATCGCAACGCGGGATCTTCTTGGGGCCGGACAAGCCTCATAGAGCGA
AGCATGAAAATAAATGCCGCAAGCGATTCAGCGGTTTGCTTTCATGTGAG
GAACTCACGGGGATGAACCTGAACCCGTACGAGCAAAACCACTCGAAGAA
CACCAAGCAGCTTCCAAATCTTTCACGCAACATGATGATGATGACGAACC
TCATCGACGCGGCGGGGGACCGATCAATCAACCAATCAACCGCACGACGT
GTGGCCTCGCCGTGGGTTGAGGGA
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