mRNA_F-serratus_M_contig1065.656.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1065.656.1 vs. uniprot
Match: UPI001675121B (DNA polymerase I n=1 Tax=Gemmobacter tilapiae TaxID=875041 RepID=UPI001675121B) HSP 1 Score: 194 bits (492), Expect = 5.560e-48 Identity = 123/301 (40.86%), Postives = 174/301 (57.81%), Query Frame = 2 Query: 659 LIDGHYIIFRSFYAMPTLTAP-DGTPVGALVGFCNFL-NKLVLRPWADGSYPHRRVVVAFDTGMDTFRHKLYPGYKADRAEAPEDLRPQFALIKRACEAYGLDVFESQGYEADDVIASLAFQAVTAGATNVTIVSADKDLSQLVTRRVNMFNYYTGEMLGPEEVLTKFLAPPGRLADLLAIAGDKADGIRGAEGYGPVTAAKVLARHANLEDALEEICSTMLKKKKDPALISDTREQVLLARRIVELCSTVPLKSRQGCKSLHTQAPYGLTPGDGASHLLDFMRCAGMPDLLRRTAQILGV 1555 LIDG IFR+++A+P LT DG PVGA+ GFCN L N+L +D + + V FD TFR+++YP YKA R E PEDLRPQF L + A +A+ + E + +EADD+IA+LA QA AG VTI+S+DKDL QLV V M + +GP+EV KF P ++ D+ A++GD D + GA G GP TAA ++ ++E LE +K+++ + + EQV +++R+V+L V L G ++L QAP A+ L+DF+ L RR A LGV Sbjct: 13 LIDGSAYIFRAYHALPPLTRKSDGLPVGAVAGFCNILWNELTKDKGSDAA---THIAVVFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTRTATKAFNIACLELENFEADDIIATLARQAREAGG-RVTIISSDKDLMQLVGGGVEMLDPMKNRKIGPDEVFEKFGVGPDKVVDVQALSGDSVDNVPGAPGIGPKTAALLIQEFGDVETLLERAHEIPQQKRRESLI--ENAEQVRISKRLVQLDDQVALDF--GLETLELQAP-------DATKLMDFLNEMEFRTLTRRVADKLGV 298
BLAST of mRNA_F-serratus_M_contig1065.656.1 vs. uniprot
Match: A0A4Q3I920_9HYPH (DNA polymerase I (Fragment) n=1 Tax=Rhizobiaceae bacterium TaxID=1913961 RepID=A0A4Q3I920_9HYPH) HSP 1 Score: 185 bits (469), Expect = 5.600e-48 Identity = 124/315 (39.37%), Postives = 174/315 (55.24%), Query Frame = 2 Query: 659 LIDGHYIIFRSFYAMPTLTAP-DGTPVGALVGFCNFLNKLVL--RPWADGSYPHRRVVVAFDTGMDTFRHKLYPGYKADRAEAPEDLRPQFALIKRACEAYGLDVFESQGYEADDVIASLAFQAVTAGATNVTIVSADKDLSQLVTRRVNMFNYYTGEMLGPEEVLTKFLAPPGRLADLLAIAGDKADGIRGAEGYGPVTAAKVLARHANLEDALEEICSTMLKKKKDPALISDTREQVLLARRIVELCSTVPLKSRQGCKSLHTQAPYGLTPGDGASHLLDFMRCAGMPDLLRRTAQILGVNKDGSQIL*VKIE 1594 LIDG IFR+F+A+P LT DG PVGA+ GFCN L KL+ R + G P V+ FD TFR ++Y YKA+R+ PE+L PQF LI++A A+ L E++G+EADD+IA+ A QA GA +VTIVS+DKDL QLVT V+M++ + + +V+ K+ P ++ DL A+ GD D + G G GP TAA++L +LE L + +K+ K I EQ L+RR+VEL + VPL+ L Q L+ F++ L RR A N D + V++E Sbjct: 9 LIDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLTDARDTSVGVTPTHFAVI-FDYSSKTFRKEIYDAYKANRSAPPEELVPQFGLIRQATRAFNLPCIETEGFEADDIIATYARQAEATGA-DVTIVSSDKDLMQLVTPMVHMYDSMKDKQISVPDVVEKWGVAPEKMIDLQALVGDSVDNVPGIPGIGPKTAAQLLEEFGDLETLLSR--AGEIKQVKRRESIIAFAEQARLSRRLVELRTDVPLELELDALVLEPQ---------NGPKLIGFLKAMNFGTLTRRVATACDCNADEIEAADVEVE 310
BLAST of mRNA_F-serratus_M_contig1065.656.1 vs. uniprot
Match: A0A1L9BQX0_9RHOB (DNA polymerase I n=4 Tax=Paracoccus TaxID=265 RepID=A0A1L9BQX0_9RHOB) HSP 1 Score: 193 bits (491), Expect = 7.230e-48 Identity = 122/299 (40.80%), Postives = 175/299 (58.53%), Query Frame = 2 Query: 659 LIDGHYIIFRSFYAMPTLTAP-DGTPVGALVGFCNFLNKLVLRPWADGSYPHRRVVVAFDTGMDTFRHKLYPGYKADRAEAPEDLRPQFALIKRACEAYGLDVFESQGYEADDVIASLAFQAVTAGATNVTIVSADKDLSQLVTRRVNMFNYYTGEMLGPEEVLTKFLAPPGRLADLLAIAGDKADGIRGAEGYGPVTAAKVLARHANLEDALEEICSTMLKKKKDPALISDTREQVLLARRIVELCSTVPLKSRQGCKSLHTQAPYGLTPGDGASHLLDFMRCAGMPDLLRRTAQILG 1552 LIDG IFR+++A+P LT DG P+GA+ GFCN L + V DGS V FD TFR++++P YKA+R E PEDLRPQF L + A A+ + E++GYEADD+IA+L+ +A AG + VTI+S+DKDL QLV V+M + +++GP+EV+ KF P R+ D+ A+AGD D + GA G G TAA ++ + +L+ LE ++ +K+ K + D +Q+ ++RR+V L PL SL + P T LLDF+ M L R A+ LG Sbjct: 13 LIDGSAFIFRAYHALPPLTRKSDGLPMGAVAGFCNMLWRYVQNE--DGSSAPTHAAVIFDHSSKTFRNEIFPDYKANRPEPPEDLRPQFPLTRDATRAFNIACIETEGYEADDIIAALSCKARDAGGS-VTIISSDKDLMQLVGNGVDMLDPIKNKLIGPDEVMEKFGVGPDRVIDVQALAGDAVDNVPGAPGIGIKTAALLINEYGDLDTLLER--ASEIKQPKRRQTLIDHADQIRISRRLVALDCDTPLDFT--LDSLEVRDPEPQT-------LLDFLATMEMRTLSARIAEKLG 297
BLAST of mRNA_F-serratus_M_contig1065.656.1 vs. uniprot
Match: A0A0N0E8D9_9HYPH (DNA polymerase I n=3 Tax=Ahrensia TaxID=152180 RepID=A0A0N0E8D9_9HYPH) HSP 1 Score: 193 bits (491), Expect = 8.820e-48 Identity = 125/317 (39.43%), Postives = 179/317 (56.47%), Query Frame = 2 Query: 659 LIDGHYIIFRSFYAMPTLTAP-DGTPVGALVGFCNFLNKLV--LRPWADGSYPHRRVVVAFDTGMDTFRHKLYPGYKADRAEAPEDLRPQFALIKRACEAYGLDVFESQGYEADDVIASLAFQAVTAGATNVTIVSADKDLSQLVTRRVNMFNYYTGEMLGPEEVLTKFLAPPGRLADLLAIAGDKADGIRGAEGYGPVTAAKVLARHANLEDALEEICSTMLKKKKDPALISDTREQVLLARRIVELCSTVPLKSRQGCKSLHTQAPYGLTPGDGASHLLDFMRCAGMPDLLRRTAQILGVNKDGSQIL*VKIESS 1600 L+DG IFR+F+A+P LT DGTP+GA+ GFCN L KL+ R G P V+ FD TFR+ LY YKA+R+E PEDLRPQF LI+ A A+ L E GYEADD+IA+ A QA AG VTI+S+DKDL QLVT +V+M++ +G +EV+ KF P ++ DL A+ GD D I G G GP TAA++L + +L+ LE K+++ + + +Q L+R +V L P+++ T + L DG L+ F++ + L RR A+ GV + + +E++ Sbjct: 9 LVDGSAYIFRAFHALPPLTRKSDGTPIGAVSGFCNMLWKLLQDARNTDVGVTPTHFAVI-FDYSSKTFRNDLYAEYKANRSEPPEDLRPQFGLIREATRAFNLPCIELDGYEADDLIATYAAQAEAAGG-EVTIISSDKDLMQLVTEKVSMYDSMKDRQIGIDEVIEKFGVKPDKMIDLQALTGDSTDNIPGVPGIGPKTAAQLLETYGDLDTLLERAHEIKQNKRRENLI--EFADQARLSRELVTLKVNTPVET--------TIDDFILEDQDGPK-LVAFLKAMELNTLTRRVAEATGVEANEIDAADIPVENA 312
BLAST of mRNA_F-serratus_M_contig1065.656.1 vs. uniprot
Match: A0A844HHC5_9RHOB (DNA polymerase I n=2 Tax=Paracoccus TaxID=265 RepID=A0A844HHC5_9RHOB) HSP 1 Score: 193 bits (490), Expect = 9.820e-48 Identity = 121/299 (40.47%), Postives = 173/299 (57.86%), Query Frame = 2 Query: 659 LIDGHYIIFRSFYAMPTLTA-PDGTPVGALVGFCNFLNKLVLRPWADGSYPHRRVVVAFDTGMDTFRHKLYPGYKADRAEAPEDLRPQFALIKRACEAYGLDVFESQGYEADDVIASLAFQAVTAGATNVTIVSADKDLSQLVTRRVNMFNYYTGEMLGPEEVLTKFLAPPGRLADLLAIAGDKADGIRGAEGYGPVTAAKVLARHANLEDALEEICSTMLKKKKDPALISDTREQVLLARRIVELCSTVPLKSRQGCKSLHTQAPYGLTPGDGASHLLDFMRCAGMPDLLRRTAQILG 1552 LIDG IFR+++A+P LT DG P+GA+ GFCN L K + GS V FD TFR+ +YP YKA+R EAPEDLRPQF L + A A+ + E++GYEADD+IA+L+ +A AG VTI+S+DKDL QLV V M + G+ +GP+EV KF P R+ D+ A+AGD D + GA G G TAA+++ + +LE LE ++ +K+ K + D EQ+ +++R+V+L PL+ G ++L + P A L++F+ L R A G Sbjct: 13 LIDGSAFIFRAYHALPPLTRRSDGLPIGAVAGFCNMLWKYLQD--GKGSDQPTHAAVIFDHSSKTFRNDIYPLYKANRPEAPEDLRPQFPLTREATRAFNIACIETEGYEADDIIAALSCKARDAGG-RVTIISSDKDLMQLVGNGVGMLDPIKGKDIGPDEVREKFGVGPERVVDVQALAGDAVDNVPGAPGIGIKTAAQLIQEYGDLETLLER--ASEIKQPKRRQTLIDNAEQIRISKRLVQLDCDTPLE--YGLETLELRDP-------DADALIEFLNRMEFRTLTTRVADRYG 297 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1065.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1065.656.1 >prot_F-serratus_M_contig1065.656.1 ID=prot_F-serratus_M_contig1065.656.1|Name=mRNA_F-serratus_M_contig1065.656.1|organism=Fucus serratus male|type=polypeptide|length=505bp MKSPIILARTAIVVYNSSRFVTPLAFGVRCCSLDLKTAVRSTWTHRTVGTback to top mRNA from alignment at F-serratus_M_contig1065:197738..205614+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1065.656.1 ID=mRNA_F-serratus_M_contig1065.656.1|Name=mRNA_F-serratus_M_contig1065.656.1|organism=Fucus serratus male|type=mRNA|length=7877bp|location=Sequence derived from alignment at F-serratus_M_contig1065:197738..205614+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1065:197738..205614+ >mRNA_F-serratus_M_contig1065.656.1 ID=mRNA_F-serratus_M_contig1065.656.1|Name=mRNA_F-serratus_M_contig1065.656.1|organism=Fucus serratus male|type=CDS|length=3030bp|location=Sequence derived from alignment at F-serratus_M_contig1065:197738..205614+ (Fucus serratus male)back to top |