mRNA_F-serratus_M_contig1064.642.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1064.642.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.750e-16 Identity = 60/159 (37.74%), Postives = 73/159 (45.91%), Query Frame = 2 Query: 512 EDTNSTCSNGLSGFEDTVNLVCCDAACGLCGGTGC---GNVVGLTGNDCCSETIASNGTLCSVAGEAPCIV----DLPEVTSN---------STCSNGFSGFEDTVNFVCCDVACGLCGGEGCGNVPG---LTGDDCCSSTIATTGTLCSVAGEAPCIL 931 E + T +G G + +VCC CG CGG GC G+ GL CC + S G C EAPCI+ D +V S TCSNG G D VCC +ACG CGG GCG+ L G+ CCSS + C APCI+ Sbjct: 567 ESADDTQIDGTEGIDGN-GVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDDVDSGISEESADDTQTCSNGIEGI-DHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723
BLAST of mRNA_F-serratus_M_contig1064.642.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 3.980e-15 Identity = 50/108 (46.30%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 2225 IDPPEVTESVCANGLPGVQDGNICCAEACNGVXXXXXXXXXXXXXGSTDCCSAFILAGGVYCEDGVSAPCIMIYGTFDTA---SPTTTPRVIIFTE-APTVEGQTEAP 2536 +DPP+ S C NG+ GVQDG++CCAE CNGV G+ DCCS+ IL GV C+ GV APCIM+ GT+ A +PT P T AP TEAP Sbjct: 1 MDPPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVATTEAP 108
BLAST of mRNA_F-serratus_M_contig1064.642.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.910e-15 Identity = 57/142 (40.14%), Postives = 66/142 (46.48%), Query Frame = 2 Query: 2030 SNSTCSNDLAGFEDTADGACCDVACGLCGGAGCGNVPGLTG-DDCCSGTIAVN--GTLCSVTGAAPCIID--------------PPEVTESVCANGLPGVQDGNICCAEACNGVXXXXXXXXXXXXXGSTDCCSAFILAGGV 2404 S STCSN + G D CC ACG CGG GCG + G G DCC TI G C G APC+++ V S C+NG+PG QDG ICC E C G GS +CC + ILA GV Sbjct: 2 SPSTCSNGIPGVSDGE--VCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFC---GEAPCVMEGFTPSPLNPALDGTAAPVAPSTCSNGIPGYQDGVICCLEIC-GRCGGDGCGTIPGTGGSDNCCPSDILAAGV 137
BLAST of mRNA_F-serratus_M_contig1064.642.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 9.040e-12 Identity = 140/504 (27.78%), Postives = 194/504 (38.49%), Query Frame = 2 Query: 1160 VTSNGTCSNGFAGIEDTVNFVCCDVACGLCGGAGCGN-VPGLTGDDCCSGTIATNGTLCSVVGAAPCILELPDVISNETCSNGLSGFEDAVNG---------------VCCDALCGL------------CG---------GAGCGNVP-GLTGNDCCSATIATNGTLCSVAG---EAPCILDLPEVTTNSTCSNGLLGFEDTVNYVCCDAACGLCGGAGCGNVPGLTGNDCCSETIATNGTLCSVTGEAPCILEL-PEVTTNST---------CSNGLSGFEDTVNYV-CCDAACGLCGGAGCGNVPGLT----------SDD-----CCS----SQIAVNGTSCS----ETGEAPCIMELPEVTSNST-CSNDLAGFEDTADGA-CCDVACGLCGGAGCGNVPGLTGDDCCSGTIAVNGTLCSVTGAAPCIIDPPEVTESVCANGLPGVQDGNICCAEACNGVXXXXXXXXXXXXXGSTDCCSAFILAGGVYCEDGVSAPCIM 2440 V + TC NG AG+ CC + CG CGG+GC + GLTGDDCC+ IA+NG LC+ GAAPCI ++ D + NET L F D + VC +A G CG GAG ++P G + C A + V G + P L +S + + VC +A C G+ T + + ++T SV P + ++ P + N+T C G G + N CD CG G CG ++ SDD C S S++ V G S + E A C T S C G + A+GA CD+ CG G A D+ C G A++ P + +G GV G+ CC C XXXXXXX G+ CC++ I + G+ C D +APCI+ Sbjct: 19 VATAQTCDNGLAGVSK--GEYCCTLGCGTCGGSGCSSRAEGLTGDDCCTSNIASNGILCADSGAAPCIGDVGDDVPNET-EGFLGCFSDPADSRVFVQEISSASMTAEVCSEACAGSAYYGTQYSTECWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYEHDVDGGESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEA----CAGSAYYGTQYSTEHTVHASHVSTKTP--SVVHTPPTLPDIVPLLCGNATHYCFAFYKQCWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYENDADDGESDDPSYLGCYSDPADSRVFVQGVSSAAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGVCDMPCG--GDA----------DEICGGFYAMSVYENGADDGVP---------DEFSCSGDAGVSSGSSCCEADCX---XXXXXXXSSRGSGAASCCTSNIQSAGILCSDSGAAPCIL 489
BLAST of mRNA_F-serratus_M_contig1064.642.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.930e-10 Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 2 Query: 1160 VTSNGTCSNGFAGIEDTVNFVCCDVACGLCGGAGCGN-VPGLTGDDCCSGTIATNGTLCSVVGAAPCILELPDVISNET 1393 VT+ TC NG AG+ + CC + CG CGG GC GL G+DCC+ IA NG LC+ GAAPCI ++ D + ET Sbjct: 4 VTTAQTCDNGLAGVSN--GDYCCTLGCGTCGGPGCSTRAEGLDGNDCCTANIAQNGILCAESGAAPCIGDVEDDVPTET 80 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1064.642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1064.642.1 >prot_F-serratus_M_contig1064.642.1 ID=prot_F-serratus_M_contig1064.642.1|Name=mRNA_F-serratus_M_contig1064.642.1|organism=Fucus serratus male|type=polypeptide|length=854bp MLSGGMNVATVLRISLVIVSTLASVGAVCTGGIPGVQAVSSDACCVAECGback to top mRNA from alignment at F-serratus_M_contig1064:192843..205778+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1064.642.1 ID=mRNA_F-serratus_M_contig1064.642.1|Name=mRNA_F-serratus_M_contig1064.642.1|organism=Fucus serratus male|type=mRNA|length=12936bp|location=Sequence derived from alignment at F-serratus_M_contig1064:192843..205778+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1064:192843..205778+ >mRNA_F-serratus_M_contig1064.642.1 ID=mRNA_F-serratus_M_contig1064.642.1|Name=mRNA_F-serratus_M_contig1064.642.1|organism=Fucus serratus male|type=CDS|length=5124bp|location=Sequence derived from alignment at F-serratus_M_contig1064:192843..205778+ (Fucus serratus male)back to top |