mRNA_F-serratus_M_contig106.598.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 235 bits (600), Expect = 3.540e-68 Identity = 159/470 (33.83%), Postives = 244/470 (51.91%), Query Frame = 1 Query: 16 WEVVPRPKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEET-STTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVE---GFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410 W V R V+ TK +F +K ++G I ++K R VA GF Q+ + E+ + S SI + L + A + L LDV A+L A++KE++YIE PE + D+V +L KA+YGL AG KT L GF+ C +D C++ G+ I + VDD++V T+ ++ + F IK+LG +L G I D L +Q HYV+T+ +F+ + T+ LSK D P+ + + EM PYR +G L + A TRPD A+A L + + PG HW AA R L+ T+D GI+YGG T + + DA++ T D RR VSG +M+ GG + +K Q +++S ++E + L+ E+ ++R + G PI + E+N+GAI +A N RT+H+ ++HH VRD V ++ YV+T Q AD Sbjct: 26 WTKVKRQTWMKVIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTYICLY-VDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQ-----VWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLAD 488
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 235 bits (599), Expect = 8.760e-68 Identity = 159/478 (33.26%), Postives = 254/478 (53.14%), Query Frame = 1 Query: 13 VWEVVPRPKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQ--VGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLG-AGLYLGCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDD------APQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNI---IIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410 VW++V PKG +G K IF+ K G I +YK R VA+GF Q + I E+ SP S+ S +++ + A D EL +DV A+L N+ E +Y+ PE++ ++ + V RL++++YGL A + + + + GF++ D C++ + G+ +I+V+ VDD+L+AS + + L F +KDLG A LG I RD G L Q Y+ + S+F + + A G+ P++K D P+ E E ++M PY AVG LM+ TRPD AY LG+ PG+ HW+ AKR ++ RTKD +TY + S ++ A+ D++FA C D+RR SG ML GGA SW S Q + + ++ ++E + E N +LR F+T I D I + I +N+ A + N +S +++H+ +K +V++ V+S V ++ T AD Sbjct: 38 VWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMS-----NYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYRRS--SHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGIWLR---NFVTQLRIVDGIEKPLRINCDNKAAELYSKNNRSSSKSKHIDIKFLVVKERVQSLQVSIEHISTNSMIAD 504
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 244 bits (622), Expect = 1.010e-67 Identity = 159/485 (32.78%), Postives = 246/485 (50.72%), Query Frame = 1 Query: 34 PKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRH-------------------------VGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410 P+G+ + +K F K K G+I+ +K R VA+GF QI ++ SSSP PS ASI ++L + K L DV AY A + EE++++LP + ++ + ++A+YGL +G + L GFEQC+ADPCVFR+++ VV+I+V+ VDD+LVA + D E+ + L FP K+LG + GC I RD +AGTL+ Q Y+ +M ++ P REA+G ++W +T +RPD ++A + + P HW A ++ L T+D+GITY GS L+ +VDA++A D RR V+G A +GG S SK Q + S++S ++E + E V E F+R V F+ P +I ++ E+N+GAI + N +S RT+H + V+ H + + SG + +V T EQHAD Sbjct: 576 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEW-----------------------------------PAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVL-EDNQGAIALVQNPLSSGRTKHRREISFHRRIEFXVFVFDGSRVARNIDVRFHFIGGLIRSGDISVKFVPTTEQHAD 1020
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: W8BNV5_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BNV5_CERCA) HSP 1 Score: 236 bits (601), Expect = 2.740e-67 Identity = 158/486 (32.51%), Postives = 248/486 (51.03%), Query Frame = 1 Query: 1 LARQVWEVVPRPKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQ----------VGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGA-GLYLGCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEK-PLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNEL----RFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410 +A WE+V RP GK ++ +K R K +NG IEK K R VA+GF Q I E+ +P +I +++ I+A E+ LD V AYL ++ E+Y++LP D + D+ V L+KA+YGL +G L + T+L+ G ++DPC++ N ++++ + VDDL+VA K+ + ++L F +KDLG L LG + T+ Q YV + ++F + + S A L K+ P+TE E PY+ VG LM+ A TRPD A+ L + N G HW AAKR L+ T ++GI++ L + DA++ + D RR +G A L A SW S+ Q+ +++S +SE + L++ E R LR++ G +D I I +N+GA K++ N RT+HV ++HH VR+AV+ ++ Y+ T E AD Sbjct: 117 IANNTWEIVDRPIGKKIVESKWALRTKYNQNGNIEKRKARLVAKGFTQRAGIDYSETFAPVARLNTIRLLMAISAEMGLEIHQLDFVSAYLNGTIETEIYMKLPTDLFSILDEEEASQYTEDKVCLLKKAIYGLKQSGRLWYQKLHTKLSNMGMSASKSDPCLYTY-NNNNTIILIAIYVDDLIVACNDKQKLSRIKDELASSFEMKDLGPIKLCLGIEFNQCLKTNTITMCQSRYVAEILNRFQMNDCKPVSTPANTSIKLCKEMCPKTEEEKLSASKLPYQNLVGSLMYLAVSTRPDIAHIVSVLSQFNTNYGNQHWVAAKRVLRYLKGTPNLGISFTRTRNF--SLEGFADADWGSNIDDRRSYTGFAFTLANAAISWESRKQRTVAISSTESEYMSLSDSTKEAIYLKRLLREIIG-------EDRTITIYNDNQGAGKLSKNPIFHNRTKHVDIRHHFVREAVDRKDIKVEYISTEEMPAD 592
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A1Y1MYL8_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MYL8_PHOPY) HSP 1 Score: 240 bits (613), Expect = 4.740e-66 Identity = 152/465 (32.69%), Postives = 247/465 (53.12%), Query Frame = 1 Query: 16 WEVVPRPKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYLGCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410 WE+VP+P GK ++ +K +F+ K G I +YK R A+GF QI+ + +E+ SPT SI +L I A +D+E+ DV A+L ++ EE+Y+ P V +L+K++YGL A +K + L G +QC D CV++ G V++++ VDD L+ E K ++ L+ F I ++G I+RD + ++ Q +YV+ + +F++E+ +S A + +E + PYREAVG L++ AT++RPD AYA + + ++ LAHW A KR ++ T D GI Y + KL + DA+FA DTRR SG ML GGA +W S+ Q+ S+++ ++E V A EL +LR + +DD + +N + A+++ N +RT+H+ VK H +R+ E G + YV++ +Q AD Sbjct: 811 WELVPKPVGKNIIDSKWVFKVKRTSQGEICRYKARLCARGFTQIRGLDYEETFSPTTRYDSIRTLLSIAAERDYEMVQFDVTTAFLNGDLVEEIYMTPPTGANIDPTLVCKLKKSLYGLKQASRCWNKKFDDSLKKFGLQQCNGDKCVYKGEFNGAKVLLILF-VDDGLIIGENKSILSVILDKLKVKFNIVINEPNYFVGLEISRDRASKSICVSQRNYVKQLVKRFNLEDAKCSSVPADPHAMM-----SSEIGHQVQNNIPYREAVGALIYIATVSRPDIAYAVGVVSRYLNSYSLAHWNAVKRIIRYLKGTMDDGIEYKPTSHN-RKLVGFSDADFAGDHDTRRSTSGYISMLHGGAITWSSQRQQTVSLSTTEAEYVAAANASKELMWLRSFLREIHEDVVDDATKLFVDN-QSAVRLVQNAEFHKRTKHIDVKFHFIREQQERGEIDVTYVESDKQLAD 1267 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig106.598.1 >prot_F-serratus_M_contig106.598.1 ID=prot_F-serratus_M_contig106.598.1|Name=mRNA_F-serratus_M_contig106.598.1|organism=Fucus serratus male|type=polypeptide|length=126bp MASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMback to top mRNA from alignment at F-serratus_M_contig106:681630..683039- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig106.598.1 ID=mRNA_F-serratus_M_contig106.598.1|Name=mRNA_F-serratus_M_contig106.598.1|organism=Fucus serratus male|type=mRNA|length=1410bp|location=Sequence derived from alignment at F-serratus_M_contig106:681630..683039- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig106:681630..683039- >mRNA_F-serratus_M_contig106.598.1 ID=mRNA_F-serratus_M_contig106.598.1|Name=mRNA_F-serratus_M_contig106.598.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig106:681630..683039- (Fucus serratus male)back to top |