mRNA_F-serratus_M_contig106.598.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig106.598.1
Unique NamemRNA_F-serratus_M_contig106.598.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 5.810e-80
Identity = 173/460 (37.61%), Postives = 259/460 (56.30%), Query Frame = 1
Query:   34 PKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            P+G+  + +K  F  K  K G+I+ +K R VA+GF QI ++    SSSP PS ASI ++L +   K   L   DV  AY  A + EE++++LP    +   ++ + ++A+YGL  +G       +  L   GFEQC+ADPCVFR+++   VV+I+V+ VDD+LVA  +  D E+ +  L   FP K+LG   +  GC I RD +AGTL+  Q  Y+ +M  +F V+ TS   A  G      D  P+   E EE    P REA+G +MW +T +RPD ++A   + +    P   HW A ++ L     T+D+GITY    GS   L+ +VDA++A   D RR VSG A  +GG   S  SK Q + S++S ++E +   E V E  F+R V  F+ P     +I ++ E+N+GAI +  N  +S RT+H+ V++H +R    SG +   +V T EQHAD
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVL-EDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHAD 1223          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.640e-79
Identity = 173/460 (37.61%), Postives = 259/460 (56.30%), Query Frame = 1
Query:   34 PKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            P+G+  + +K  F  K  K G+I+ +K R VA+GF QI ++    SSSP PS ASI ++L +   K   L   DV  AY  A + EE++++LP    +   ++ + ++A+YGL  +G       +  L   GFEQC+ADPCVFR+++   VV+I+V+ VDD+LVA  +  D E+ +  L   FP K+LG   +  GC I RD +AGTL+  Q  Y+ +M  +F V+ TS   A  G      D  P+   E EE    P REA+G +MW +T +RPD ++A   + +    P   HW A ++ L     T+D+GITY    GS   L+ +VDA++A   D RR VSG A  +GG   S  SK Q + S++S ++E +   E V E  F+R V  F+ P     +I ++ E+N+GAI +  N  +S RT+H+ V++H +R    SG +   +V T EQHAD
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVL-EDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHAD 1602          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.700e-79
Identity = 173/460 (37.61%), Postives = 259/460 (56.30%), Query Frame = 1
Query:   34 PKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            P+G+  + +K  F  K  K G+I+ +K R VA+GF QI ++    SSSP PS ASI ++L +   K   L   DV  AY  A + EE++++LP    +   ++ + ++A+YGL  +G       +  L   GFEQC+ADPCVFR+++   VV+I+V+ VDD+LVA  +  D E+ +  L   FP K+LG   +  GC I RD +AGTL+  Q  Y+ +M  +F V+ TS   A  G      D  P+   E EE    P REA+G +MW +T +RPD ++A   + +    P   HW A ++ L     T+D+GITY    GS   L+ +VDA++A   D RR VSG A  +GG   S  SK Q + S++S ++E +   E V E  F+R V  F+ P     +I ++ E+N+GAI +  N  +S RT+H+ V++H +R    SG +   +V T EQHAD
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVL-EDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHAD 1622          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.740e-79
Identity = 173/460 (37.61%), Postives = 259/460 (56.30%), Query Frame = 1
Query:   34 PKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            P+G+  + +K  F  K  K G+I+ +K R VA+GF QI ++    SSSP PS ASI ++L +   K   L   DV  AY  A + EE++++LP    +   ++ + ++A+YGL  +G       +  L   GFEQC+ADPCVFR+++   VV+I+V+ VDD+LVA  +  D E+ +  L   FP K+LG   +  GC I RD +AGTL+  Q  Y+ +M  +F V+ TS   A  G      D  P+   E EE    P REA+G +MW +T +RPD ++A   + +    P   HW A ++ L     T+D+GITY    GS   L+ +VDA++A   D RR VSG A  +GG   S  SK Q + S++S ++E +   E V E  F+R V  F+ P     +I ++ E+N+GAI +  N  +S RT+H+ V++H +R    SG +   +V T EQHAD
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVL-EDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHAD 1765          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 1.840e-78
Identity = 161/460 (35.00%), Postives = 257/460 (55.87%), Query Frame = 1
Query:   34 PKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            P+G+  + +K  F  K  K+G+IEK+K R VA+GF QI ++    SSSP PS ASI ++L +   K  +L   DV  A+  A + E++++ LP        +V + ++A+YGL  +G       +  L   GFEQC+ADPCVFR+ ++ +VV        D ++ + +  D ++ +  L   FP KDLG  ++  GC + RD +AGTL+  Q  Y+ ++ ++F V+ TS+  A+ G      D  P+ + E+      P REA+G +MW +T +RPD ++A   + +    P   HW+A  + L     T+D+GITY    GS   L+ +VDA++A   D RR VSG A  +GG   S  SK Q + S++S ++E +   E V E  F+R V  F+ P     +I ++ E+N+GA+ +  N  +S R++H+ V++H +R    SG +   +V T EQHAD
Sbjct:   39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRK-MKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGV-----DIGPKRDDESG--GEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITY--ERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVL-EDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHAD 486          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 1.600e-75
Identity = 175/472 (37.08%), Postives = 256/472 (54.24%), Query Frame = 1
Query:    7 RQVWEVVPRPKGKTVLGTKTIFRR---KIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            R+ WE   R + +  LG   +F R   K  K G+I+  K R VA+GF QI SI    SSSP PS ASI ++L +   K   L   DV  AY  A + EE++++LP    +   ++ + ++A+YGL  +G       +  L   GFEQC+ADPCVFR+++   VV+I+V+ VDD+LVA  +  D E+ +  L   FP K+LG   +  GC I RD DAGTL+  Q  Y+ +M  +F V+ TS   A  G      D  P+   E ++    P REAVG +MW +T +RPD ++A   + +    P   HW A ++ L     T+D+GITY    GS   L+ +VDA +A   D RR VS  A  +GG   S  SK + + S++S ++E +   E V E  F+R V  F+ P     +I ++ E+N+GAI +  N  +S   +H+ V+ H +R    SG     +V T EQHAD
Sbjct:  355 REGWEQAMREEFEGHLGHGDVFIRRRWKTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVL-EDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHAD 814          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 3.260e-74
Identity = 162/465 (34.84%), Postives = 252/465 (54.19%), Query Frame = 1
Query:   19 EVVPRPKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLG-AGLYLGCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            E+   P+G+  +  K IF  K  + G I  +K R VA+GF QI  +    SSS  PS  SI  ++ ++          D+  AY  A +KEE+Y+ LP+       +  ++++A+YGL  +G       +  L + G+EQC+ DPC+FR+V+ G VV ++V+ VDD+++ S T+ + E+ +  L+  FP+KDLG    Y GC I  D + GT K  Q  Y+ +M ++F+V  T+ T A   +     D  P+ + E+   +  P REA+G LMW    TRPD A   ++L KI  +P    W A  R +     TKD+GITY    GS   L  +VD+++A     RR  +G AV +GG      +K Q VT+ ++ ++E +   E V E  F+R V  F+ P       I +RE+NEGA+ +  N F+S R++H+  + H +R+  ++G +   YV T EQHAD
Sbjct:  151 EISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDD-----DLGPKRDDESSVDK--PVREAIGCLMWLL-FTRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITY--VRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPET-SGATIRVREDNEGALALVQNPFSSARSKHIDERFHFIRELFKAGNITADYVSTAEQHAD 603          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5K0Q0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q0_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 5.180e-74
Identity = 164/465 (35.27%), Postives = 252/465 (54.19%), Query Frame = 1
Query:   19 EVVPRPKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLG-AGLYLGCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            E+   P+G+  +  K IF  K  + G I  +K R VA+GF QI  +    SSS  PS  SI  ++ ++          D+  AY  A +KEE+Y+ LP+       +  ++++A+YGL  +G       +  L + G+EQC+ DPC+FR+V+ G VV ++V+ VDD+++ + T+ + E+ +  L+  FP+KDLG    Y GC I  D + GT K  Q  Y+ +M ++F+V  T+ T A   +     D  P+ + E+   +  P REA+G LMW    TRPD A   ++L KI  +P    W A  R +     TKD+GITY    GS   L  +VD+++A     RR  +G AV +GG     F K Q VT+ ++ ++E V   E V E  F+R V  F+ P       I +RE+NEGA+ +  N F+S R++H+ V+ H +R+  + G +   YV T EQHAD
Sbjct:  352 EISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLCA-TEEEREELLASLQKGFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDD-----DLGPKRDDESSVDK--PVREAIGCLMWLL-FTRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITY--VRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCAFMKTQPVTAQSTTEAEYVAAGEGVKEALFVRGVLSFIAPET-SGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKVGKITADYVSTEEQHAD 804          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 7.190e-74
Identity = 163/465 (35.05%), Postives = 253/465 (54.41%), Query Frame = 1
Query:   19 EVVPRPKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLG-AGLYLGCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASPKSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHAD 1410
            E+   P+G+  +  K IF  K  + G I  +K R VA+GF QI  +    SSS  PS  SI  ++ ++          D+  AY  A +KEE+Y+ LP+       +  ++++A+YGL  +G       +  L + G+EQC+ DPC+FR+V+ G VV ++V+ VDD+++ S T+ + E+ +  L+  FP+KDLG    Y GC I  D + GT K  Q  Y+ +M ++F+V  T+ T A   +     D  P+ + E+   +  P REA+G LMW    TRPD A   ++L KI  +P    W A  R +     TKD+GITY    GS   L  +VD+++A     RR  +G AV +GG      +K Q VT+ ++ ++E +   E V E  F+R V  F+ P       I +RE+NEGA+ +  N F+S R++H+ V+ H +R+  ++G +   YV T EQHAD
Sbjct:  331 EISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLEQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDD-----DLGPKRDDESSVDK--PVREAIGCLMWLL-FTRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITY--VRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPET-SGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHAD 783          
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 7.210e-74
Identity = 165/466 (35.41%), Postives = 254/466 (54.51%), Query Frame = 1
Query:   34 PKGKTVLGTKTIFRRKIGKNGRIEKYKCRFVAQGFRQIKSIH*DESSSPTPSQASIMMVLGITAAKDWELRPLDVVMAYLEANVKEELYIELPEDYRNSCDQVGRLQKAMYGLVHAGLL*SKTYSTELAAKGFEQCQADPCVFRRVLRGNVVVIVVV*VDDLLVASETKRDEEQAINDLRFCFPIKDLGAGLYL-GCHITRDHDAGTLKFDQHHYVRTMASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLMWTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYGGAPGSCTKLSAWVDANFATCPDTRR*VSGGAVMLGGGATSWFSKMQKVTSVASP-------KSECVVLAEVVNELRFLRQVEGFLTPPPIDDNIIIIRENNEGAIKMATNRFNSRRTRHVGVKHHIVRDAVESGTVRTHYVKTGEQHA 1407
            P+G+  + +K  F  K  K G+I+ +K R VA+GF QI ++    SSSP PS ASI ++L +   K   L   DV  AY  A + EE++++LP    +   ++ + ++A+YGL  +G       +  L   GFEQC+ADPCVFR+++   VV+I+V+ VDD+LVA  +  D E+ +  L   FP K+L    +  GC I RD + GTL+  Q  Y+ +M  +F V+ TS   A+ G      D  P+   + E+    P REA+G +MW +T +RPD ++A   + +    P   HW A ++ L     T+D+GITY    GS   L+ +VDA++A   D RR VSG A  +GG   S  SK Q + S++S        ++E     E V E  F+R V  F+ P     +I ++  +N+GA+ +  N  +S RT+H+ V+ H +R    SG +   ++ T EQHA
Sbjct:  330 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAG-SDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGV-----DLGPK--RDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVL--DNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKFIPTTEQHA 782          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig106.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE5.810e-8037.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.640e-7937.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.700e-7937.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.740e-7937.61Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JCG0_9PHAE1.840e-7835.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE1.600e-7537.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE3.260e-7434.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0Q0_9PHAE5.180e-7435.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE7.190e-7435.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE7.210e-7435.41Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig106contigF-serratus_M_contig106:681630..683039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog67593.Physo131457
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1410
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig106.598.1prot_F-serratus_M_contig106.598.1Fucus serratus malepolypeptideF-serratus_M_contig106 681978..682355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.3350275-UTR-F-serratus_M_contig106:681629..6819771622928894.3350275-UTR-F-serratus_M_contig106:681629..681977Fucus serratus maleUTRF-serratus_M_contig106 681630..681977 -
1690962619.25057-UTR-F-serratus_M_contig106:681629..6819771690962619.25057-UTR-F-serratus_M_contig106:681629..681977Fucus serratus maleUTRF-serratus_M_contig106 681630..681977 -
1622928894.3626354-UTR-F-serratus_M_contig106:682355..6830391622928894.3626354-UTR-F-serratus_M_contig106:682355..683039Fucus serratus maleUTRF-serratus_M_contig106 682356..683039 -
1690962619.2840898-UTR-F-serratus_M_contig106:682355..6830391690962619.2840898-UTR-F-serratus_M_contig106:682355..683039Fucus serratus maleUTRF-serratus_M_contig106 682356..683039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.3488896-CDS-F-serratus_M_contig106:681977..6823551622928894.3488896-CDS-F-serratus_M_contig106:681977..682355Fucus serratus maleCDSF-serratus_M_contig106 681978..682355 -
1690962619.2737155-CDS-F-serratus_M_contig106:681977..6823551690962619.2737155-CDS-F-serratus_M_contig106:681977..682355Fucus serratus maleCDSF-serratus_M_contig106 681978..682355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig106.598.1

>prot_F-serratus_M_contig106.598.1 ID=prot_F-serratus_M_contig106.598.1|Name=mRNA_F-serratus_M_contig106.598.1|organism=Fucus serratus male|type=polypeptide|length=126bp
MASKFSVEETSTTSAAAGEKPLSKDDAPQTEAETEEMRVTPYREAVGVLM
WTATMTRPDAAYAAHQLGKINDTPGLAHWRAAKRPLQCPWRTKDVGITYG
GAPGSCTKLSAWVDANFATCPDTRR*
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mRNA from alignment at F-serratus_M_contig106:681630..683039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig106.598.1 ID=mRNA_F-serratus_M_contig106.598.1|Name=mRNA_F-serratus_M_contig106.598.1|organism=Fucus serratus male|type=mRNA|length=1410bp|location=Sequence derived from alignment at F-serratus_M_contig106:681630..683039- (Fucus serratus male)
CTCGCGCGCCAGGTGTGGGAGGTAGTTCCCCGTCCCAAAGGGAAGACGGT GCTTGGCACCAAAACCATCTTCAGAAGAAAAATCGGAAAGAACGGGCGAA TAGAAAAATACAAGTGTAGATTCGTGGCTCAGGGATTCCGACAAATCAAA AGTATCCACTAGGATGAGTCATCATCGCCCACACCATCGCAGGCTAGCAT AATGATGGTGCTCGGCATCACAGCGGCGAAAGACTGGGAACTCCGTCCAC TCGACGTCGTCATGGCGTACCTGGAGGCGAACGTAAAAGAAGAACTGTAC ATCGAGCTACCTGAAGACTACCGCAACTCCTGCGACCAGGTGGGACGACT GCAAAAGGCAATGTACGGCCTTGTGCACGCCGGATTATTATGATCAAAAA CATACAGCACCGAACTCGCCGCTAAGGGGTTCGAGCAATGTCAGGCCGAC CCATGCGTGTTCAGGCGAGTACTGCGCGGGAACGTTGTCGTCATCGTCGT GGTATAAGTCGACGACCTGCTGGTGGCGAGTGAAACGAAGCGCGACGAGG AGCAGGCAATAAATGACCTCCGATTCTGTTTCCCAATCAAGGACTTAGGG GCCGGATTATATCTCGGATGCCACATCACGCGGGATCACGACGCGGGGAC GCTGAAATTCGACCAACACCACTACGTACGGACCATGGCTTCAAAATTCA GCGTCGAGGAGACCAGCACCACGTCGGCGGCAGCGGGAGAAAAACCCCTG TCCAAGGACGATGCCCCACAGACCGAGGCGGAGACGGAAGAAATGCGTGT CACCCCTTACAGGGAGGCGGTAGGGGTCCTCATGTGGACTGCAACCATGA CCCGCCCTGATGCCGCGTACGCTGCTCATCAGCTAGGAAAAATTAACGAC ACCCCGGGACTAGCACACTGGAGGGCGGCGAAAAGGCCACTACAATGCCC GTGGCGTACGAAGGACGTTGGGATCACCTACGGCGGAGCGCCGGGGTCGT GCACAAAACTGTCGGCATGGGTGGACGCAAATTTCGCCACTTGCCCAGAC ACTCGGCGTTAGGTTTCAGGCGGAGCAGTGATGCTGGGAGGGGGCGCGAC CAGTTGGTTCTCGAAGATGCAGAAGGTAACCTCGGTCGCGTCACCCAAAT CAGAGTGTGTGGTGCTGGCAGAAGTTGTAAATGAGCTCCGTTTCCTTCGA CAGGTAGAGGGCTTCTTGACGCCGCCGCCGATCGACGACAACATCATCAT TATTAGGGAAAATAACGAAGGAGCTATCAAGATGGCGACCAACCGTTTCA ACAGCAGGCGTACGAGGCACGTGGGCGTGAAACACCACATCGTCCGCGAT GCGGTAGAGAGTGGTACAGTTCGAACCCATTACGTCAAGACGGGGGAGCA ACATGCCGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig106:681630..683039-

>mRNA_F-serratus_M_contig106.598.1 ID=mRNA_F-serratus_M_contig106.598.1|Name=mRNA_F-serratus_M_contig106.598.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig106:681630..683039- (Fucus serratus male)
ATGGCTTCAAAATTCAGCGTCGAGGAGACCAGCACCACGTCGGCGGCAGC
GGGAGAAAAACCCCTGTCCAAGGACGATGCCCCACAGACCGAGGCGGAGA
CGGAAGAAATGCGTGTCACCCCTTACAGGGAGGCGGTAGGGGTCCTCATG
TGGACTGCAACCATGACCCGCCCTGATGCCGCGTACGCTGCTCATCAGCT
AGGAAAAATTAACGACACCCCGGGACTAGCACACTGGAGGGCGGCGAAAA
GGCCACTACAATGCCCGTGGCGTACGAAGGACGTTGGGATCACCTACGGC
GGAGCGCCGGGGTCGTGCACAAAACTGTCGGCATGGGTGGACGCAAATTT
CGCCACTTGCCCAGACACTCGGCGTTAGATGGCTTCAAAATTCAGCGTCG
AGGAGACCAGCACCACGTCGGCGGCAGCGGGAGAAAAACCCCTGTCCAAG
GACGATGCCCCACAGACCGAGGCGGAGACGGAAGAAATGCGTGTCACCCC
TTACAGGGAGGCGGTAGGGGTCCTCATGTGGACTGCAACCATGACCCGCC
CTGATGCCGCGTACGCTGCTCATCAGCTAGGAAAAATTAACGACACCCCG
GGACTAGCACACTGGAGGGCGGCGAAAAGGCCACTACAATGCCCGTGGCG
TACGAAGGACGTTGGGATCACCTACGGCGGAGCGCCGGGGTCGTGCACAA
AACTGTCGGCATGGGTGGACGCAAATTTCGCCACTTGCCCAGACACTCGG
CGTTAG
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