mRNA_F-serratus_M_contig1056.577.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: K9EZ64_9CYAN (Signal recognition particle protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=K9EZ64_9CYAN) HSP 1 Score: 461 bits (1187), Expect = 2.030e-154 Identity = 253/446 (56.73%), Postives = 332/446 (74.44%), Query Frame = 1
Query: 298 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGKQMAGGAP 1635
MF+ L+E + GQ I++S++ AL+EVRRALL+ADV+ V V V+EK G ++V GV P+QQFIK++ DELV +MG PLA + PTV+L+AGLQGTGKTTA+AKLA +L++QE + +LVA DVYRPAA+DQLITLGK+I+V VF MG +PV+I KAG+A+A+++G DTVIVDTAGR +D +M EL+ I+ A + DEVLLVVDAMTGQEAATL F+E+IGITGAILTK+DGD+RGGAALS++ +S KPIKF+G+GEK++ L+PFYPDRMASRILGMGDV+TLVEKAQ+E+ +AE++ K++ FDFNDFLKQ+R+MKNMGSL G+ K++PGM+ KLS QL Q E ++R E +I MT +ER +P LL + P R RRIAK +G VS + +FQ M+S M +MG+ GG P
Sbjct: 1 MFEALSERFESAWKTLRGQDKISDSNIKEALREVRRALLEADVSFNVVKDFVVDVQEKAQGAEVVSGVAPDQQFIKIVYDELVALMGDANEPLAD-VESKPTVVLMAGLQGTGKTTASAKLALHLRKQERS---AMLVATDVYRPAAVDQLITLGKQIKVPVFEMGTDANPVDIAKAGIAKAQEDGVDTVIVDTAGRLQIDQDMMAELEQIKTAISPDEVLLVVDAMTGQEAATLTQTFHEQIGITGAILTKMDGDSRGGAALSIRQISGKPIKFIGIGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEEVDIADAEKLQAKILEARFDFNDFLKQTRLMKNMGSLTGIMKLIPGMSNKLSADQLQQGETQLRRCEAMINSMTKQEREDPDLLANSPG---RRRRIAKGSGYNDKDVSKLVSDFQKMRSMMKQMGQGGMGGFP 439
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: UPI001408B20F (signal recognition particle protein n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI001408B20F) HSP 1 Score: 460 bits (1183), Expect = 5.820e-154 Identity = 259/449 (57.68%), Postives = 334/449 (74.39%), Query Frame = 1
Query: 298 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGKQMAGGAPGGG 1644
MFD L+E + + GQ I+ES+V ALKEVRRALL+ADVNL+V + +E V+ K +G ++V GV+P+QQFIK++++ELV +MG APLA R + PT+IL+AGLQGTGKTTA AKLA +L++Q+ VLLVA DVYRPAA+DQLITLGK+I V VF G DPV+I + GLA+A+ + DTVI+DTAGR +D +M EL ++ A DE LLVVDAMTGQEAA L F+E+IGITGAILTK+DGDTRGGAALS++ VS +PIKFVG+GEK++ L+PFYPDRMASRILGMGD++TLVEKAQ+E+ +A +M +K++ FDF DFLKQ R++KNMGSLGGV K++PGM KLS QL Q E+ +KR E +I MT EERR P LL S+P+ QR IA +G+K++ VS + +F M+S M + G M GG PG G
Sbjct: 1 MFDALSERLESAWKKLRGQNKISESNVQDALKEVRRALLEADVNLQVTKKFIEEVRSKALGAEVVAGVSPDQQFIKIVHEELVVLMGETDAPLAHR-ENPPTIILMAGLQGTGKTTACAKLALHLQKQDRT---VLLVATDVYRPAAVDQLITLGKQINVPVFEKGTQADPVDIAREGLAQAQADQIDTVIIDTAGRLQIDQDMMGELAAVKAAVQPDETLLVVDAMTGQEAANLTRSFHEQIGITGAILTKMDGDTRGGAALSIRQVSGQPIKFVGIGEKVEALQPFYPDRMASRILGMGDILTLVEKAQEEVDLADAAKMQQKILEASFDFTDFLKQMRLLKNMGSLGGVMKLIPGM-NKLSTDQLQQGEQQLKRVEAMINSMTQEERRNPDLLSSNPSRRQR---IATGSGLKVADVSKLIADFTRMRSMMQQFG--MGGGLPGMG 439
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: A0A6J4VZS0_9CYAN (Signal recognition particle protein n=1 Tax=uncultured Synechococcales cyanobacterium TaxID=1936017 RepID=A0A6J4VZS0_9CYAN) HSP 1 Score: 459 bits (1182), Expect = 8.520e-154 Identity = 259/453 (57.17%), Postives = 333/453 (73.51%), Query Frame = 1
Query: 298 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGKQ----MAGGAPGGG 1644
MF+ L++ + GQ I+ES++ AL+EVRRALL+ADVNL+V VE V++K +G +++ GV PEQQFIK+++DELV +MG APLA D +PT++L+AGLQGTGKTTAAAKLA L++Q N LLVA D+YRPAAIDQL+TLG +I+V VF +G V+PVEI + G+ RA+ E +TVI+DTAGR +D +M EL I+ E LLVVDAMTGQEAA L F+ +IGITGA+LTKLDGDTRGGAALSV+ +S +PIKF+GVGEK++ L+PFYP+RMASRILGMGDV+TLVEKAQ+E +AE+M +KM++ FDF+DFLKQ+R++KNMGSLGG+ K++PGM KLS +QL Q E +KRAE +I MT EERR P LL P+ R RRIAK AG L VS + +FQ M+S M +MG+ M GG PG G
Sbjct: 1 MFEALSDRLEGAWKKLRGQDRISESNIQDALREVRRALLEADVNLQVVKDFVEEVRQKALGAQVLTGVQPEQQFIKIVHDELVRVMGETNAPLAI-ADSSPTIVLMAGLQGTGKTTAAAKLALQLRKQNRN---ALLVATDIYRPAAIDQLVTLGNQIDVPVFELGTEVNPVEIARQGVERAKAENINTVIIDTAGRLQIDPEMMGELAQIKKTVQPHETLLVVDAMTGQEAANLTRTFHAEIGITGAVLTKLDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPERMASRILGMGDVLTLVEKAQEEFDLADAEKMQQKMLSASFDFSDFLKQTRLLKNMGSLGGIMKLIPGM-NKLSDEQLQQGETQLKRAEAMIGSMTQEERRNPDLLAGSPS---RRRRIAKGAGYGLEDVSKLVSDFQKMRSLMQQMGRGQFPGMGGGFPGMG 445
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: B0CBK0_ACAM1 (Signal recognition particle protein n=3 Tax=Acaryochloris TaxID=155977 RepID=B0CBK0_ACAM1) HSP 1 Score: 459 bits (1181), Expect = 9.220e-154 Identity = 257/450 (57.11%), Postives = 337/450 (74.89%), Query Frame = 1
Query: 298 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGK-QMAGGAPGGG 1644
MF+ L++ + + GQ I+ES++ AL+EVRRALL+ADVNL+V +E V+E +G +++ GV P+QQFIK+++D+LVEIMG+ PLA ++ PTVIL+AGLQGTGKTTA AKLA +L++QE+ LLVA D+YRPAAIDQL+TLG++I+V VF +G +PVEI + GLA AR++ DTVIVDTAGR +D +M EL DI+ A DE LLVVDAMTGQEAA L F+++IGITGAILTK+DGDTRGGAALS++ +S KPIKFVGVGEK++ L+PFYPDRMASRILGMGDV+TLVEKAQ+E +AE+M +K++ +FDF DFLKQ R++KNMGSLGGV K++PGM K+S QL + E +K+ E +I MT EER+ P LL + P+ R RRIAK +G + V + EFQ M+S M +MG+ QM G +P GG
Sbjct: 1 MFEALSDRLESAWKTLRGQDKISESNIQDALREVRRALLEADVNLQVVKDFIEEVRESALGAEVITGVQPDQQFIKIVHDQLVEIMGATNEPLAE-SNKPPTVILMAGLQGTGKTTATAKLALHLRKQEQTS---LLVATDIYRPAAIDQLVTLGEQIDVPVFQLGTDANPVEIARQGLAAAREQNVDTVIVDTAGRLQIDPEMMSELADIKKAIKPDETLLVVDAMTGQEAANLTQTFHDQIGITGAILTKMDGDTRGGAALSIRQISGKPIKFVGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEEFDIADAEKMQKKIMEAQFDFTDFLKQMRLLKNMGSLGGVMKLIPGM-NKISNSQLQEGETKLKQTEAMINSMTKEERKNPQLLSNSPS---RRRRIAKGSGYTQNDVGKLVTEFQRMRSMMQQMGQGQMPGMSPAGG 442
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Match: UPI0017474A0C (signal recognition particle protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017474A0C) HSP 1 Score: 459 bits (1181), Expect = 1.480e-153 Identity = 249/439 (56.72%), Postives = 325/439 (74.03%), Query Frame = 1
Query: 298 MFDTLTESMTAITDMFSGQKTITESSVGGALKEVRRALLDADVNLKVADRLVEGVKEKTVGMKLVEGVTPEQQFIKVMNDELVEIMGSEQAPLASRTDGNPTVILLAGLQGTGKTTAAAKLAKYLKQQEENPKKVLLVAGDVYRPAAIDQLITLGKRIEVEVFSMGQGVDPVEITKAGLARARDEGFDTVIVDTAGRQVVDDGLMKELKDIQVASAADEVLLVVDAMTGQEAATLATVFNEKIGITGAILTKLDGDTRGGAALSVQGVSQKPIKFVGVGEKLDDLEPFYPDRMASRILGMGDVVTLVEKAQKEMSEKEAEEMARKMINKEFDFNDFLKQSRMMKNMGSLGGVAKMLPGMAGKLSPQQLNQVEEGVKRAEGLIAVMTPEERREPSLLLSDPTASQRLRRIAKDAGVKLSAVSAFLKEFQGMQSNMARMGK 1614
MFD L + + + GQ I+E++V AL+EVRRALL+ADVNL+V + ++EK +G +++ GV P QQFIK++ DELV +MG PL + D PT++L+AGLQGTGKTTA AKLA +L++ E + LLVA DVYRPAAIDQL+TLGK+I V VF MG +PVEI + G+ +A+ +G DTVI+DTAGR +D +M EL I+ A EVLLVVDAMTGQEAA L F+E+IG+TGAILTK+DGDTRGGAALSV+ +S +PIKF+GVGEK++ L+PFYPDRMASRILGMGDV+TLVE+AQ+E+ +AE++ K++ +FDF DFLKQ+RMMKNMGSL G+ K++PGM GK+S +QL Q E +KRAE +I+ MT EERR P LL P+ QR IAK AG L+ VS + +FQ M+S M +MG+
Sbjct: 1 MFDALADRLESAWKKIRGQDKISEANVQEALREVRRALLEADVNLQVVKDFISEIQEKALGAEVISGVNPGQQFIKIIYDELVAVMGETDVPLV-KADTAPTIVLMAGLQGTGKTTATAKLALHLRKLERS---TLLVATDVYRPAAIDQLVTLGKQIGVPVFEMGSDANPVEIARQGIEKAKADGIDTVIIDTAGRLQIDQSMMAELAQIKAAVQPHEVLLVVDAMTGQEAANLTRTFHEQIGVTGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVERAQEEVDLADAEQLQEKILTAKFDFTDFLKQTRMMKNMGSLAGIVKLIPGMGGKISDEQLQQGEAQLKRAEAMISSMTIEERRNPDLLAGSPSRRQR---IAKGAGYSLNDVSKLVNDFQKMRSMMQQMGQ 432 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1056.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1056.577.1 >prot_F-serratus_M_contig1056.577.1 ID=prot_F-serratus_M_contig1056.577.1|Name=mRNA_F-serratus_M_contig1056.577.1|organism=Fucus serratus male|type=polypeptide|length=596bp RRLERQLLKYTSVLMYMPTRLVAVAVATAYYASVPSSLAFAPSGVAIDGRback to top mRNA from alignment at F-serratus_M_contig1056:233055..253320+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1056.577.1 ID=mRNA_F-serratus_M_contig1056.577.1|Name=mRNA_F-serratus_M_contig1056.577.1|organism=Fucus serratus male|type=mRNA|length=20266bp|location=Sequence derived from alignment at F-serratus_M_contig1056:233055..253320+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1056:233055..253320+ >mRNA_F-serratus_M_contig1056.577.1 ID=mRNA_F-serratus_M_contig1056.577.1|Name=mRNA_F-serratus_M_contig1056.577.1|organism=Fucus serratus male|type=CDS|length=3576bp|location=Sequence derived from alignment at F-serratus_M_contig1056:233055..253320+ (Fucus serratus male)back to top |