mRNA_F-serratus_M_contig1056.574.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1056.574.1
Unique NamemRNA_F-serratus_M_contig1056.574.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5J7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.890e-7
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  235 LRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAK 447
            LRG   T+ R  T  +P +    V WRQQS ETFLASMDSMG D ALK L+  G   A D R+ +R L+ K
Sbjct:    3 LRGVGRTQSRVVTI-QPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEKIGSTFAKDTRKRLRGLEDK 72
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BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.890e-7
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  232 ALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAK 447
            ALRG   TR R  T  +P +    V WRQQS ETFLASMDS+G D ALK L+  G   A D  + +R L+ K
Sbjct:    2 ALRGVGRTRSRVVTI-QPAEPTAPVDWRQQSTETFLASMDSIGYDNALKHLEKIGSTFAKDTHKRLRGLEDK 72
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5J7C0_9PHAE6.890e-750.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA27_9PHAE7.890e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1056contigF-serratus_M_contig1056:162413..163449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928889.8601604-CDS-F-serratus_M_contig1056:162412..1627091622928889.8601604-CDS-F-serratus_M_contig1056:162412..162709Fucus serratus maleCDSF-serratus_M_contig1056 162413..162709 +
1690962617.0939913-CDS-F-serratus_M_contig1056:162412..1627091690962617.0939913-CDS-F-serratus_M_contig1056:162412..162709Fucus serratus maleCDSF-serratus_M_contig1056 162413..162709 +
1622928889.870751-CDS-F-serratus_M_contig1056:163296..1634491622928889.870751-CDS-F-serratus_M_contig1056:163296..163449Fucus serratus maleCDSF-serratus_M_contig1056 163297..163449 +
1690962617.1021636-CDS-F-serratus_M_contig1056:163296..1634491690962617.1021636-CDS-F-serratus_M_contig1056:163296..163449Fucus serratus maleCDSF-serratus_M_contig1056 163297..163449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1056.574.1prot_F-serratus_M_contig1056.574.1Fucus serratus malepolypeptideF-serratus_M_contig1056 162413..163449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1056.574.1

>prot_F-serratus_M_contig1056.574.1 ID=prot_F-serratus_M_contig1056.574.1|Name=mRNA_F-serratus_M_contig1056.574.1|organism=Fucus serratus male|type=polypeptide|length=150bp
LTTTPLDSKGRPANTKTVYTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQ
VRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEK
EVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAKA
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mRNA from alignment at F-serratus_M_contig1056:162413..163449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1056.574.1 ID=mRNA_F-serratus_M_contig1056.574.1|Name=mRNA_F-serratus_M_contig1056.574.1|organism=Fucus serratus male|type=mRNA|length=1037bp|location=Sequence derived from alignment at F-serratus_M_contig1056:162413..163449+ (Fucus serratus male)
TTGACCACCACGCCTCTCGATAGCAAGGGCCGGCCCGCGAACACCAAGAC
GGTCTATACAGATAAAACCTATCTAGCTTTGAGCTTCAAAGGCGAAGAGA
TGGCTGAAGTTGTGCTCAAGAACAAACGAGATTGGTGGAACAGACAGCAG
GTGCGGCAGCCTACAGGGCGCAGCAGCAGCAGCAAAAAGAGGAGGACCGC
AGACAGCAACACATTCTGCCCCATCATCACGGCTCTACGCGGTGGGACGA
TTACCCGCCCTAGGAGAGCAACCGCTGATAAGCCGATTAAGCAAGAGGTG
AGATGTAACCAAAATATTGATGTTGTTGTTGTTGTTGTGGTTGCTGTTGT
TGTTGTTGTTGTTGTTAAAATGATACCGTTGCTGTATCGCTGGCTATTAA
TAGTTCAATTCGCGTACCACCTAAACAGCAAGTACCTTTTACAGCAGTGC
TTTTGCAGCACAGCAGTACATTTACAGCATACAGCTGCAACGCGGTACGC
TGGCCACATCCACTTCAATTCGCGTACAATCTAAACAGTGGTTCCTTTAT
AGCAGGACCTTTACAGCAGTGCTTTTGCAGCACAGCAATACATTTCAAGC
ATACAGCTGCAATGCGGTAGATTACCGGCAGACTTTTGACTCTTTAATTT
TGTACCCGAGACAAAACGCAATGTCCGCGGCCGGCACGACTTGTAGCCAC
TGTTTCAATGCCTTGGACTGCTGTGAATGGCGCCCACTGCTTCGCCGCGG
GGTGGTACAATGTGCGTAAAGCATCACAAAAACCTCTGGGCTGGAAACGT
AGTGCTGTCAAAGCTTTCAAGTATTTACTGTGCGCTCCGCCGTCCTCACG
TGTTTCTTACCCCTGTGCGATGCGTTGACGACAGAAGGAGGTCGGCTGGA
GGCAGCAGTCTGCAGAAACATTCCTCGCATCGATGGACAGCATGGGGACG
GACGCCGCGCTGAAATTCCTGGATTCCAAGGGCTTGAAGGTTGCCGCGGA
TATTCGTCGAGAGGTCCGAGACTTGAAAGCTAAAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1056:162413..163449+

>mRNA_F-serratus_M_contig1056.574.1 ID=mRNA_F-serratus_M_contig1056.574.1|Name=mRNA_F-serratus_M_contig1056.574.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1056:162413..163449+ (Fucus serratus male)
TTGACCACCACGCCTCTCGATAGCAAGGGCCGGCCCGCGAACACCAAGAC
GGTCTATACAGATAAAACCTATCTAGCTTTGAGCTTCAAAGGCGAAGAGA
TGGCTGAAGTTGTGCTCAAGAACAAACGAGATTGGTGGAACAGACAGCAG
GTGCGGCAGCCTACAGGGCGCAGCAGCAGCAGCAAAAAGAGGAGGACCGC
AGACAGCAACACATTCTGCCCCATCATCACGGCTCTACGCGGTGGGACGA
TTACCCGCCCTAGGAGAGCAACCGCTGATAAGCCGATTAAGCAAGAGTTG
ACCACCACGCCTCTCGATAGCAAGGGCCGGCCCGCGAACACCAAGACGGT
CTATACAGATAAAACCTATCTAGCTTTGAGCTTCAAAGGCGAAGAGATGG
CTGAAGTTGTGCTCAAGAACAAACGAGATTGGTGGAACAGACAGCAGGTG
CGGCAGCCTACAGGGCGCAGCAGCAGCAGCAAAAAGAGGAGGACCGCAGA
CAGCAACACATTCTGCCCCATCATCACGGCTCTACGCGGTGGGACGATTA
CCCGCCCTAGGAGAGCAACCGCTGATAAGCCGATTAAGCAAGAGAAGGAG
GTCGGCTGGAGGCAGCAGTCTGCAGAAACATTCCTCGCATCGATGGACAG
CATGGGGACGGACGCCGCGCTGAAATTCCTGGATTCCAAGGGCTTGAAGG
TTGCCGCGGATATTCGTCGAGAGGTCCGAGACTTGAAAGCTAAAGCAAAG
GAGGTCGGCTGGAGGCAGCAGTCTGCAGAAACATTCCTCGCATCGATGGA
CAGCATGGGGACGGACGCCGCGCTGAAATTCCTGGATTCCAAGGGCTTGA
AGGTTGCCGCGGATATTCGTCGAGAGGTCCGAGACTTGAAAGCTAAAGCA
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