mRNA_F-serratus_M_contig1056.574.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1056.574.1
Unique NamemRNA_F-serratus_M_contig1056.574.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: D7FQY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY8_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 7.330e-23
Identity = 67/152 (44.08%), Postives = 88/152 (57.89%), Query Frame = 1
Query:    1 LTTTPLDSKGRPANTKTV--YTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAKA 450
            +T T +D+K +  +++T   Y   T  A+S K +E+ + VLKNKR+ W + Q R           RRTADS    P+I ALR G  TR R  T  +P +    V WRQQS ETFLASMDSMG D ALK L+  G   A D R+ +R+L+ KA
Sbjct:    3 VTATLVDAKHKKRSSQTYSGYAKNTEEAVSEKAKELTDKVLKNKREQWQKAQQRSGXXXXXGG-VRRTADSAVADPVIMALRSGGRTRSRVVTI-QPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEEIGSTFAKDTRKRLRELEDKA 152          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.650e-22
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    1 LTTTPLDSKG--RPANTKTVYTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAK 447
            LTTT +D K   R +N + VY + T  +++ K  EMA +VLKNKR+ W + Q     G SS    RR AD     P++ ALRGG  TR R  T  +P +    V WRQQ  ETFLASMDSMG D ALK L+      A D R+ +R+L+ K
Sbjct:   46 LTTTLVDKKNPNRSSNKRQVYVENTEESITSKALEMARIVLKNKREKWEKAQGHSG-GSSSGGGPRRNADREVADPVMAALRGGGRTRSRVVTI-QPAEPTAPVDWRQQCTETFLASMDSMGYDNALKHLEEIVSTFAKDARKRLRELEDK 194          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5JVZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.460e-21
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 LTTTPLDSKGRPANTKTV--YTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDL 438
            +T T +DSK + ++++T   Y   T  A+S K +E+ + VLK KR+ W + Q R   G SSS    RTADS    P+I ALRG   T  R  T + P +    V WRQQS ETFLASMDSMG D ALK ++  G   A D R+ +R L
Sbjct:   50 VTATLVDSKHKNSSSQTYSGYVKNTEEAVSEKAKELTDKVLKTKREQWQKAQQRSGGG-SSSGGVGRTADSAVTNPVIMALRGVGRTLSRVVTIE-PAEPTTPVDWRQQSTETFLASMDSMGYDNALKHVEKIGSTFAKDTRKRLRGL 195          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.060e-21
Identity = 64/126 (50.79%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   76 ALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKE-VGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAKA 450
            A+S +  E+ + VLKNKR+ W + Q R   G S SS  RRTADS    P+ITALRGG  TR R  T++ P++QE E V WRQ + ETFLASMDSMG + AL+ L   G   A D    +R+L+AKA
Sbjct:   50 AVSKQAAELTDKVLKNKREQWQKAQQRSG-GSSRSSGVRRTADSAVADPVITALRGGGRTRSRVQTSE-PVEQETEPVNWRQHATETFLASMDSMGHENALRHLKKIGSTFAKDTLVRLRELEAKA 173          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.250e-19
Identity = 67/151 (44.37%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 LTTTPLDSK--GRPANTKTVYTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAK 447
            +T T +DSK   R + T + Y   +  A+S K EE+ + VLKNKR+ W + Q             RRT DS    P+I ALRG   TRPR  T  +P +    V WRQQSAETFLASMDSMG D AL+ L+  G   A D R+ +R L+ K
Sbjct:  207 VTATLVDSKHKNRSSQTYSGYAKDSEEAVSEKAEELTDKVLKNKRERWQKAQXXXXXXXXXXX-VRRTEDSAVADPVIMALRGVGRTRPRVVTI-QPTEPTAPVDWRQQSAETFLASMDSMGYDNALQHLEKIGSTFAKDTRKRLRGLEDK 355          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.790e-17
Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 1
Query:    1 LTTTPLDSKG--RPANTKTVYTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAK 447
            L TT +D K   R +N + V+   T   ++ K  EMA  +LKNKR+ W +   R    RSS    RR AD       + ALRG   TR   +T  +P +      WRQQS ETF+ASMDSMG D AL  L+  G K A + R  +R+L+AK
Sbjct:   46 LITTLVDKKSPNRSSNKQQVFVANTEERVASKALEMAHRLLKNKRERWEKAHGRSGGSRSSGGGARRNADREVADLFMAALRGCGRTRSG-STISEPAEPTAPADWRQQSTETFIASMDSMGYDKALHHLEGTGSKFAKETRVRLRELEAK 195          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5JQZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.460e-12
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  112 VLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAK 447
            +LKNKR+ W + + R     SS    +  AD     P++ A RG   TR    T  +P +      WRQQS ETF+ASMDSMG + AL  L+  G K A + R  VR+L+AK
Sbjct:   51 LLKNKRERWEKARGRSGGSSSSGGGAKTNADREVADPVMAAFRGCGRTRYG-VTISEPAEPTAPADWRQQSTETFVASMDSMGYNKALHHLEGTGSKFAKETRVRVRELEAK 161          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5KM14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM14_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.710e-9
Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   22 SKGRPANTKTVYTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDA-ALKFLDSKGLKVAADIRREVRDL 438
            S  RP++ +T Y + T  A+S +  EMA+ VLK KRD + R+                  D     P+I ALRGG  TR    T  KP +QE         AE+FLA ++S  + + AL+FL SKGL  A ++RR +R+L
Sbjct:   74 SPNRPSDKETRYVENTEEAVSSEALEMADRVLKKKRDVFLRENGGDXXXXXXXXXXXXXXDDELADPVIVALRGGGRTRSGVETG-KPDEQE--------DAESFLAFLNSKESSSDALEFLASKGLDAAKEVRRRIREL 204          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5KGU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.210e-9
Identity = 52/140 (37.14%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   22 SKGRPANTKTVYTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQVRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDA-ALKFLDSKGLKVAADIRREVRDL 438
            S  RP++ +T Y + T  A S +  EMA+ VLK KRD + R+                  D     P+I ALRGG  TR    T  KP +QE         AE+FLA ++S  + + AL+FL SKGL  A ++RR +R+L
Sbjct:   55 SPNRPSDKETRYVENTEEAASSEALEMADRVLKKKRDVFLRENGGXXXXXXXXXXXXXXXDDELADPVIVALRGGGRTRSGVETG-KPDEQE--------DAESFLAFLNSKESSSDALEFLASKGLDAAKEVRRRIREL 185          
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Match: A0A6H5KNU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.540e-8
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  232 ALRGGTITRPRRATADKPIKQEKEVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAK 447
            ALRG   TR R  T  +P +    V WRQQS ETFLASMDS G D ALK L+  G   A D R+ +R L+ K
Sbjct:    2 ALRGVGRTRSRVVTI-QPAEPTAPVDWRQQSTETFLASMDSTGYDNALKHLEKIGSTFAKDTRKRLRGLEDK 72          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1056.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FQY8_ECTSI7.330e-2344.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LEY9_9PHAE6.650e-2245.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVZ1_9PHAE7.460e-2144.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE8.060e-2150.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K847_9PHAE3.250e-1944.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHT7_9PHAE1.790e-1741.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQZ3_9PHAE3.460e-1241.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM14_9PHAE2.710e-937.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGU5_9PHAE7.210e-937.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNU1_9PHAE1.540e-851.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1056contigF-serratus_M_contig1056:162413..163449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928889.8601604-CDS-F-serratus_M_contig1056:162412..1627091622928889.8601604-CDS-F-serratus_M_contig1056:162412..162709Fucus serratus maleCDSF-serratus_M_contig1056 162413..162709 +
1690962617.0939913-CDS-F-serratus_M_contig1056:162412..1627091690962617.0939913-CDS-F-serratus_M_contig1056:162412..162709Fucus serratus maleCDSF-serratus_M_contig1056 162413..162709 +
1622928889.870751-CDS-F-serratus_M_contig1056:163296..1634491622928889.870751-CDS-F-serratus_M_contig1056:163296..163449Fucus serratus maleCDSF-serratus_M_contig1056 163297..163449 +
1690962617.1021636-CDS-F-serratus_M_contig1056:163296..1634491690962617.1021636-CDS-F-serratus_M_contig1056:163296..163449Fucus serratus maleCDSF-serratus_M_contig1056 163297..163449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1056.574.1prot_F-serratus_M_contig1056.574.1Fucus serratus malepolypeptideF-serratus_M_contig1056 162413..163449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1056.574.1

>prot_F-serratus_M_contig1056.574.1 ID=prot_F-serratus_M_contig1056.574.1|Name=mRNA_F-serratus_M_contig1056.574.1|organism=Fucus serratus male|type=polypeptide|length=150bp
LTTTPLDSKGRPANTKTVYTDKTYLALSFKGEEMAEVVLKNKRDWWNRQQ
VRQPTGRSSSSKKRRTADSNTFCPIITALRGGTITRPRRATADKPIKQEK
EVGWRQQSAETFLASMDSMGTDAALKFLDSKGLKVAADIRREVRDLKAKA
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mRNA from alignment at F-serratus_M_contig1056:162413..163449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1056.574.1 ID=mRNA_F-serratus_M_contig1056.574.1|Name=mRNA_F-serratus_M_contig1056.574.1|organism=Fucus serratus male|type=mRNA|length=1037bp|location=Sequence derived from alignment at F-serratus_M_contig1056:162413..163449+ (Fucus serratus male)
TTGACCACCACGCCTCTCGATAGCAAGGGCCGGCCCGCGAACACCAAGAC GGTCTATACAGATAAAACCTATCTAGCTTTGAGCTTCAAAGGCGAAGAGA TGGCTGAAGTTGTGCTCAAGAACAAACGAGATTGGTGGAACAGACAGCAG GTGCGGCAGCCTACAGGGCGCAGCAGCAGCAGCAAAAAGAGGAGGACCGC AGACAGCAACACATTCTGCCCCATCATCACGGCTCTACGCGGTGGGACGA TTACCCGCCCTAGGAGAGCAACCGCTGATAAGCCGATTAAGCAAGAGGTG AGATGTAACCAAAATATTGATGTTGTTGTTGTTGTTGTGGTTGCTGTTGT TGTTGTTGTTGTTGTTAAAATGATACCGTTGCTGTATCGCTGGCTATTAA TAGTTCAATTCGCGTACCACCTAAACAGCAAGTACCTTTTACAGCAGTGC TTTTGCAGCACAGCAGTACATTTACAGCATACAGCTGCAACGCGGTACGC TGGCCACATCCACTTCAATTCGCGTACAATCTAAACAGTGGTTCCTTTAT AGCAGGACCTTTACAGCAGTGCTTTTGCAGCACAGCAATACATTTCAAGC ATACAGCTGCAATGCGGTAGATTACCGGCAGACTTTTGACTCTTTAATTT TGTACCCGAGACAAAACGCAATGTCCGCGGCCGGCACGACTTGTAGCCAC TGTTTCAATGCCTTGGACTGCTGTGAATGGCGCCCACTGCTTCGCCGCGG GGTGGTACAATGTGCGTAAAGCATCACAAAAACCTCTGGGCTGGAAACGT AGTGCTGTCAAAGCTTTCAAGTATTTACTGTGCGCTCCGCCGTCCTCACG TGTTTCTTACCCCTGTGCGATGCGTTGACGACAGAAGGAGGTCGGCTGGA GGCAGCAGTCTGCAGAAACATTCCTCGCATCGATGGACAGCATGGGGACG GACGCCGCGCTGAAATTCCTGGATTCCAAGGGCTTGAAGGTTGCCGCGGA TATTCGTCGAGAGGTCCGAGACTTGAAAGCTAAAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1056:162413..163449+

>mRNA_F-serratus_M_contig1056.574.1 ID=mRNA_F-serratus_M_contig1056.574.1|Name=mRNA_F-serratus_M_contig1056.574.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1056:162413..163449+ (Fucus serratus male)
TTGACCACCACGCCTCTCGATAGCAAGGGCCGGCCCGCGAACACCAAGAC
GGTCTATACAGATAAAACCTATCTAGCTTTGAGCTTCAAAGGCGAAGAGA
TGGCTGAAGTTGTGCTCAAGAACAAACGAGATTGGTGGAACAGACAGCAG
GTGCGGCAGCCTACAGGGCGCAGCAGCAGCAGCAAAAAGAGGAGGACCGC
AGACAGCAACACATTCTGCCCCATCATCACGGCTCTACGCGGTGGGACGA
TTACCCGCCCTAGGAGAGCAACCGCTGATAAGCCGATTAAGCAAGAGTTG
ACCACCACGCCTCTCGATAGCAAGGGCCGGCCCGCGAACACCAAGACGGT
CTATACAGATAAAACCTATCTAGCTTTGAGCTTCAAAGGCGAAGAGATGG
CTGAAGTTGTGCTCAAGAACAAACGAGATTGGTGGAACAGACAGCAGGTG
CGGCAGCCTACAGGGCGCAGCAGCAGCAGCAAAAAGAGGAGGACCGCAGA
CAGCAACACATTCTGCCCCATCATCACGGCTCTACGCGGTGGGACGATTA
CCCGCCCTAGGAGAGCAACCGCTGATAAGCCGATTAAGCAAGAGAAGGAG
GTCGGCTGGAGGCAGCAGTCTGCAGAAACATTCCTCGCATCGATGGACAG
CATGGGGACGGACGCCGCGCTGAAATTCCTGGATTCCAAGGGCTTGAAGG
TTGCCGCGGATATTCGTCGAGAGGTCCGAGACTTGAAAGCTAAAGCAAAG
GAGGTCGGCTGGAGGCAGCAGTCTGCAGAAACATTCCTCGCATCGATGGA
CAGCATGGGGACGGACGCCGCGCTGAAATTCCTGGATTCCAAGGGCTTGA
AGGTTGCCGCGGATATTCGTCGAGAGGTCCGAGACTTGAAAGCTAAAGCA
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