mRNA_F-serratus_M_contig1055.566.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1055.566.1
Unique NamemRNA_F-serratus_M_contig1055.566.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A537V8G9_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V8G9_9PROT)

HSP 1 Score: 124 bits (312), Expect = 4.590e-32
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 3 
Query:  267 RDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFA 527
            R SA+A L+GWSE KG RDAI + FTF +FNEAF FM RAAL+AE++DHHPEWFNVYN+V+VTL+THD GGV+ +DI LA  +D  A
Sbjct:   10 RQSALAKLNGWSEVKG-RDAISRKFTFKDFNEAFGFMARAALIAEKLDHHPEWFNVYNKVEVTLATHDAGGVTDRDIKLADAMDRLA 95
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A2T5VI98_9HYPH (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Breoghania corrubedonensis TaxID=665038 RepID=A0A2T5VI98_9HYPH)

HSP 1 Score: 124 bits (312), Expect = 4.870e-32
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 3 
Query:  249 FVDKPERDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFATPV 536
             +   ERD+A+  LDGWS A G RDAI K+F FA+F+E+F FM R ALVAE+ DHHPEWFNVYN+VDVTLSTH+ GGV+ KDI LA  ++  A  V
Sbjct:    7 LLSPQERDAALTRLDGWS-ASGERDAITKSFRFADFSESFGFMARVALVAEKADHHPEWFNVYNKVDVTLSTHEAGGVTHKDIALAEAMEAIAATV 101
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A2D9F6N3_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D9F6N3_9PROT)

HSP 1 Score: 124 bits (312), Expect = 5.170e-32
Identity = 63/104 (60.58%), Postives = 78/104 (75.00%), Query Frame = 3 
Query:  225 LRTGKSHIFVDK---PERDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFA 527
            ++TG+  +  DK     R  A+A LDGW++  G RDAI KTF F +FN AF FMTR ALVAE+MDHHPEWFNVYNRV+VTL+THD GGV++KDI LA+ +D  A
Sbjct:    1 MQTGRQEM-TDKLTGDARTQAIAGLDGWTDVDG-RDAISKTFQFKDFNAAFGFMTRTALVAEKMDHHPEWFNVYNRVEVTLATHDAGGVTQKDIDLAAFMDGAA 102
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: UPI0006447ABF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447ABF)

HSP 1 Score: 124 bits (312), Expect = 6.370e-32
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  237 KSHIFVDKP------ERDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDF 524
            + HI +  P      ER + + T+ GW+    GRDAI +TFTF +F EAF+FMTR A+VAE+MDHHPEWFNVYNRV+VTL+THD  G+S+ DITLA  +D F
Sbjct:    7 QQHINIMAPTLLTQEERTTLLPTISGWTMDPSGRDAIKRTFTFKDFAEAFSFMTRTAIVAEKMDHHPEWFNVYNRVEVTLATHDCSGLSKNDITLAKAMDSF 108
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A152A149_9MYCE (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A149_9MYCE)

HSP 1 Score: 124 bits (311), Expect = 7.060e-32
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 3 
Query:  252 VDKPERDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFA 527
            + + ER++ + T+  W   +GGRDAI + F F +FNEAFAFMTR A+VAE+MDHHPEWFNVYN+VDVTLSTHD  G++  DI L+ ++D FA
Sbjct:    6 LTEQERNTLLPTIPQWKMVEGGRDAIHRVFIFKDFNEAFAFMTRTAIVAEKMDHHPEWFNVYNKVDVTLSTHDANGLTTNDIELSQKMDSFA 97
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A537TFV2_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TFV2_9PROT)

HSP 1 Score: 124 bits (310), Expect = 9.080e-32
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 3 
Query:  267 RDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFA 527
            R SA+A LDGWSE +G RDAI K F F +FNEAF FM R AL+AE++DHHPEWFNVYNRV+VTL+THD GGV+ +D+ LA  +D  A
Sbjct:   10 RKSALAKLDGWSEVEG-RDAISKKFAFKDFNEAFGFMARVALIAEKLDHHPEWFNVYNRVEVTLATHDAGGVTERDVKLAEAMDRLA 95
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A357V593_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A357V593_9PROT)

HSP 1 Score: 123 bits (309), Expect = 1.170e-31
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 3 
Query:  267 RDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFA 527
            RD+A+  L+GW+E  G RDAI KTFTF +FN AF FM+RAAL AE+MDHHPEW+N+YNRV+VTL+THD GGV++KDI LA+ +D  A
Sbjct:   10 RDAAIRDLNGWAEVPG-RDAIIKTFTFKDFNAAFGFMSRAALQAEKMDHHPEWYNIYNRVEVTLATHDAGGVTQKDIDLAAFMDRAA 95
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A1E4GNW5_9CAUL (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GNW5_9CAUL)

HSP 1 Score: 123 bits (309), Expect = 1.170e-31
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 3 
Query:  270 DSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFA 527
            D+A+A L+GW++A G RDAI KTF F +FN AF FMTRAA+ AEQ+DHHPEWFNVYNRVDV L+THD  GV+  D+TLAS +D  A
Sbjct:   10 DAALARLNGWAKAPGNRDAISKTFRFEDFNAAFGFMTRAAIRAEQLDHHPEWFNVYNRVDVVLTTHDADGVTELDVTLASFMDRAA 95
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: R7V903_CAPTE (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V903_CAPTE)

HSP 1 Score: 123 bits (309), Expect = 1.200e-31
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 3 
Query:  264 ERDSAVATL--DGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFA 527
            +R + + TL  DGW+  +GGRDAI K FTF++FN+AF FMTR AL A++MDHHPEWFNVYN+V +TLSTHD+GG+S++DITLA+ ++  A
Sbjct:    7 DRSTKLKTLLDDGWAMVEGGRDAIHKDFTFSDFNQAFGFMTRVALKADKMDHHPEWFNVYNKVQITLSTHDVGGLSQRDITLATFIEQVA 96
[Close]
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Match: A0A537T7F1_9PROT (Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537T7F1_9PROT)

HSP 1 Score: 123 bits (309), Expect = 1.720e-31
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 3 
Query:  267 RDSAVATLDGWSEAKGGRDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTHDLGGVSRKDITLASRLDDFATPVE 539
            R SA+A L GWSEAK  RDAI + FTF +FNEAF FM RAAL+AE++DHHPEWFNVYN+V+VTL+THD GGV+ +D+ LA  +D  A   E
Sbjct:   18 RKSALAMLPGWSEAKN-RDAITRQFTFRDFNEAFGFMARAALIAEKLDHHPEWFNVYNKVEVTLATHDAGGVTERDVKLAQAMDRLAKASE 107
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1055.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537V8G9_9PROT4.590e-3266.67Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A2T5VI98_9HYPH4.870e-3261.46Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A2D9F6N3_9PROT5.170e-3260.58Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
UPI0006447ABF6.370e-3256.86hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A152A149_9MYCE7.060e-3258.704a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A537TFV2_9PROT9.080e-3265.52Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A357V593_9PROT1.170e-3165.52Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
A0A1E4GNW5_9CAUL1.170e-3166.28Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
R7V903_CAPTE1.200e-3161.114a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A537T7F1_9PROT1.720e-3163.74Putative pterin-4-alpha-carbinolamine dehydratase ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1055contigF-serratus_M_contig1055:146082..153619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue2.1e-38
Seed eggNOG ortholog2880.D8LIA6
Preferred namePCBD2
KEGG rclassRC01208
KEGG koko:K01724
KEGG ReactionR04734
KEGG Pathwayko00790,map00790
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004497,GO:0004505,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006355,GO:0006520,GO:0006558,GO:0006559,GO:0006725,GO:0006807,GO:0007049,GO:0008124,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016054,GO:0016491,GO:0016705,GO:0016714,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019752,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0034293,GO:0042737,GO:0042763,GO:0042764,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043436,GO:0043496,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0046395,GO:0048468,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051098,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051291,GO:0051321,GO:0051704,GO:0055114,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140110,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.4-alpha-hydroxytetrahydrobiopterin dehydratase activity
EggNOG OGsCOG2154@1,KOG4073@2759
EC4.2.1.96
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons3
Model size998
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1055.566.1prot_F-serratus_M_contig1055.566.1Fucus serratus malepolypeptideF-serratus_M_contig1055 146099..153184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928887.7355368-UTR-F-serratus_M_contig1055:146081..1460981622928887.7355368-UTR-F-serratus_M_contig1055:146081..146098Fucus serratus maleUTRF-serratus_M_contig1055 146082..146098 +
1690962616.1426003-UTR-F-serratus_M_contig1055:146081..1460981690962616.1426003-UTR-F-serratus_M_contig1055:146081..146098Fucus serratus maleUTRF-serratus_M_contig1055 146082..146098 +
1622928887.790651-UTR-F-serratus_M_contig1055:153184..1536191622928887.790651-UTR-F-serratus_M_contig1055:153184..153619Fucus serratus maleUTRF-serratus_M_contig1055 153185..153619 +
1690962616.1978676-UTR-F-serratus_M_contig1055:153184..1536191690962616.1978676-UTR-F-serratus_M_contig1055:153184..153619Fucus serratus maleUTRF-serratus_M_contig1055 153185..153619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928887.749692-CDS-F-serratus_M_contig1055:146098..1463861622928887.749692-CDS-F-serratus_M_contig1055:146098..146386Fucus serratus maleCDSF-serratus_M_contig1055 146099..146386 +
1690962616.1566284-CDS-F-serratus_M_contig1055:146098..1463861690962616.1566284-CDS-F-serratus_M_contig1055:146098..146386Fucus serratus maleCDSF-serratus_M_contig1055 146099..146386 +
1622928887.7657626-CDS-F-serratus_M_contig1055:151914..1520131622928887.7657626-CDS-F-serratus_M_contig1055:151914..152013Fucus serratus maleCDSF-serratus_M_contig1055 151915..152013 +
1690962616.1822407-CDS-F-serratus_M_contig1055:151914..1520131690962616.1822407-CDS-F-serratus_M_contig1055:151914..152013Fucus serratus maleCDSF-serratus_M_contig1055 151915..152013 +
1622928887.7798185-CDS-F-serratus_M_contig1055:153025..1531841622928887.7798185-CDS-F-serratus_M_contig1055:153025..153184Fucus serratus maleCDSF-serratus_M_contig1055 153026..153184 +
1690962616.190209-CDS-F-serratus_M_contig1055:153025..1531841690962616.190209-CDS-F-serratus_M_contig1055:153025..153184Fucus serratus maleCDSF-serratus_M_contig1055 153026..153184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1055.566.1

>prot_F-serratus_M_contig1055.566.1 ID=prot_F-serratus_M_contig1055.566.1|Name=mRNA_F-serratus_M_contig1055.566.1|organism=Fucus serratus male|type=polypeptide|length=182bp
MMTTAAATSVAAQVCRKLVSRSTLNRCIASVSTAAASASFRRKIVHPLDG
TTPFKCNNFSISSDGGKRGLRTGKSHIFVDKPERDSAVATLDGWSEAKGG
RDAIFKTFTFANFNEAFAFMTRAALVAEQMDHHPEWFNVYNRVDVTLSTH
DLGGVSRKDITLASRLDDFATPVEPSRPRRS*
back to top

mRNA from alignment at F-serratus_M_contig1055:146082..153619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1055.566.1 ID=mRNA_F-serratus_M_contig1055.566.1|Name=mRNA_F-serratus_M_contig1055.566.1|organism=Fucus serratus male|type=mRNA|length=7538bp|location=Sequence derived from alignment at F-serratus_M_contig1055:146082..153619+ (Fucus serratus male)
TCTACCGCCCTTGGTTCATGATGACAACAGCAGCAGCTACATCAGTAGCA
GCACAAGTTTGTAGAAAACTCGTCTCACGATCTACGTTGAATCGATGCAT
AGCTAGTGTTAGTACAGCGGCAGCTTCCGCGAGTTTCCGACGGAAAATCG
TGCACCCTCTGGACGGAACCACCCCGTTCAAGTGTAATAACTTCAGCATC
AGCAGCGACGGCGGCAAACGCGGTCTCAGGACAGGGAAGAGTCATATCTT
CGTCGACAAACCTGAGAGAGACAGTGCTGTGGCGACGTTAGATGGGTGGT
CGGAGGTGAGGAGCTGCGCGGAGGCTGTCGTGACATAGATGTTCAAAGTG
CTTACTGAACCGGATGCGGTGGAATTTCGGACTCTTCAATTAGTCAAACC
GACCCACATGGCGATAAGAATTTATTACTGTATTATAGAGGCTACTACTG
ACTGTACCACGCCGGTACGGTACTTTCAACATGCCCACTTCATACCATTA
TTGGGTATAGGAAAGAGACCTGCCAAGGCAGCACCCGTTACTGTAACTAC
TTTGAGGATTACTGCCCCTGTGCCGGCCTCTCGGCAGTGAACGCCATCGG
TACGCGATTGCGTGATCCGATAAACCCGGGGCTAACCCGATCGCGTATGG
CGATTTAAAATAAATAAATGGACGCCGCCGCGGAACTCGGGAGGGATCCC
GTAAGCACCAGATTCAGCCTTTAGGCCAACCTTTATGGGAAACAAAAACG
ACAGTGAAACACAGAAAAGTGAAATTTCTGTGGCAAAATTTTTGTAAACG
TCGCACTATGGGCCCCGTGCCACAGAAATTTCGCCCTACAGAGATTGCGA
ATTTCTGTGGGAGGCTATTTTTCTCTGCCCACCTACAGAAATGAGGCTCA
TTTCTGTAGGTGGCTCGACAAGTTTATTTCGCCACAGAAATGATTCACGC
CTTCCAAGAACGATTGGGAGGTCGGGACTCTAGCATCCCTCCTACGTATC
AAATATCGGCAAAGAAGAGCTCGCGAGTGCTGTTGTACGATGGGTGCCGA
GCAGCAGTAGTTGTGCGATGATCGCCGGAGCAGCAGATTTGGAGGAAATT
TATAGAATCGGTTGAGGCGATGGGCCCGGGCAAGCTGATCGCCGGCGGCG
GGGGCGGTTGAATGGGTGGCGCCGGAGATTAATCAAGCAGTACGAGCGCC
CGACGGCTCGCTATCGAAATGATGTCGCTCTGCCCACTCTATTTGCGATG
TACTCGCAATTTAAGTACTAACGACCCTGTCTCGCCGGACCAAATTCTCG
GACACAAACGCGGAGAGGGAAATATTAATTTTCCCTGTTCAGTTGACTAC
GAGCAGGGCTGGCAACCTTACCCGGTTGATCCATACTCGCGGTGTGCATA
CTTGCACCTGTCTTTGTGCGGTGATGGGTGGCCAAAAATGGCGGGGTTAA
TCCGATATGCTCCCCGTTCTTTTTTGTATTTTTCCTTTATCCCATAAACG
ACCAACTATAGTTTTTCCCCACGTTTTTTTAGGCCACAGAATTTACAAAT
TTCTGTAGTTTGCTTTTCTGTTTTTTCGTTTCCCATAAAGGTTGGCCTTA
GTATAGAGAATGAGCAGGCTGACGCGGGACGGGACTGCCGAAACCGTCTC
GCGAGACCAAATTCTCAGGCGCGAACGGAGACAGGGAAAACTTAATTTTT
CCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCC
ATACTCTTGCTATATGTGATGACCATACATACCTAGTATAAAGAAAAATC
TGAACCCATCTACAGTACTTGTAGAGCTACACCTTCTGTTAATGTCAATA
ATCAATATAATAGCACCCAAGGAGGAAGTCAAAAGGCTTACCAGGTACAT
GAGACCATTGGCTATATAAGGACAAAAACTCTTGACGGGGTTATAAACGG
GTTCTCCAATGTTATTAAATAGTAGCATAGGGTCAACAGCATAGTGTCGG
GGACAAATCCACCGTTATGCTGCTGTACACATGCATTAATCGCCATGCAG
GGAGGGACAACGGAACAGAGGCAAAAACACACGATAGAACCTCTGGAGAC
AACTAAGTATAACTTGGGTTTGTGGTCGGGTTCAAGTGTTGGGAATCGGA
GTCGAGTGTAAGACTTACTACAAGTAGTCCCACAGGGTCAACCATATAAT
ATCGCCTAGAGATCCATCGTCAGCATGGTGGGTACAGGTACAACTTAATA
CTGTATAATAGTGCTGAAACCCATCTGATCCTACTGTAGACCCAGTGTAA
CAAAATTGAGCTGTATCCAAGCTCATCGTCTCTTTTGCCTCTGTTTTACC
TGCAACAGTAGCCGGTCGCCCCGGTAGCTCAGAGGTAACCTTGTAACCTT
CTGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCGC
TAAAAACTAAAATAAAAATGCTCAACGAGTGGAGACCGATTATAATATAC
TACTGTACATCGTTAGTACACAAAATTCGAGTTTACGGCCGACGATGGAA
AGGAAAGACTGAATCCTTCTCGCGATAAAAATAAAGGGACGCACCGCAGA
AGGAAGGTGGATGAGGAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGG
CTGGTACGTCCAACAAACTTGGTGTCCAGAATGAATGGGAAGAAAACACA
CACACAACGCACACATTGATTTTCTTATTTTGTGTGTAACCCCGGCTGGT
ACGTCCAACAAATTTGGTGCCCAGAATGAATGGGAAGAAAACACACACAC
AACACACACATTGATTTTCTTATTTTGTATGTGTGGGTGTGTGTGTTTGT
ATTTATTAAATTGCACATAACCGCGTAATCCGGCCCTGTAATCTACTCAT
TCTATGGTACTTCATGTAACCCACCTGGGGGTTACTTCTCTCTGTGTGTG
TGTGTGTGTGTATTTATTAAATTGCACATAACCACGCAATCCGGCTCTGT
CATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGGGGGGATCA
ATGATACTTATTACGAAAACCTCTAACCAGACGCGACAAAGGGGACACGC
TCTCTCTACTTGTAAAATTCTCACTTAAACTCAGAGTTCCTTGTGCTCCC
CCCCCTGCTTCCTTATTAATCTCTACAATATTTGAGTTGGCAGCTACTGG
ACCGACACTTCCTTTTCTACATCTCTTCCTCGTTCCACCAAAGTCTCCCC
CGTTTCCCCCTTGGCGTCTACAACTATTTAGCGGTTTCTTGCGCTTCTTA
GCCTCTCTTTCGCCATCCCCGACCCTACCCTCGTTCCCGTTCCCTTCGTC
CCCGTTCCCATCTTCGCTACTGACCTTAGGTCCATCCCCGTTCCCATCCG
GTGTTCGTCGATGGGTCTCTACCTCCTTTTTTAGAGTATATATTTACTTT
TTTTTCAACTTGAACTTGTTAGTTTTTTTTTATTAAATATTTTTACCACC
TTGTATGTAGCTGTCCCTTGGCTCCTACTCGTAGAAGGAACTACTGCGCA
TTGTGTTTGTGTGTGTGTGTTTTCTTCCCATCCATTCTGGACATCAAGTT
CGTTGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTT
CTCATCCACCTTCCTTCTGCGGTGCGTGCCCTAATTTTTATCGCGAGAAG
GATTCAGCCATTTCTTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTA
CTAACGAATTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTAGTTTTT
AGTTTTTAGTGAGAAAAATCCCGTTTGCCGGGATCGAACTCACATCCCAA
CGTGTCAGAAGGTTACGGGGTACCTACTGAGCTACCGGGGCGATTGTCAA
TGAAAAAAAGAGCTATTATAAGAAAGGCGGGTTGGGATTATGAATACTGG
TAGTGTCAAACCCGTAAACACTTAATAATAGTGTTGATCCGTAAAAAACT
TGATACATAATAATGTTAATCCCTAAAAAGCTTATTGATAGTGTCATTTT
GGGTTTCCTGCCCTATTCTCTGCTCTGCCCTGCCCAACTCTTGGAAACTG
AAAATGAAAAAAAAAAATGAAAAGCTTTTTAGTAGCGTTGATTCCTAAAA
AGCCTATCAATAGTAGTGTTAATCCCTAAAAAGCTTATTGATAGCAGTGT
TAATCCCCAAAAAGCTTGATAAAATAGTGTTAATAATCCCTAAAATGCTT
ATCAATGGTGTTAATCCCTTAAAATCTTATTATTAAAGTGTTATTTTGGG
TTCCCTACCCTACCGTGCCCTGTCCTGCCCTGTCCTGCCCAACTCTTGGA
ACACAAGCACAAGGGGACGGGAGCGGGCGGTGAGAGGGCTCACAGGAGTC
AAAAGTCAGAATTTTCGTGTTACTGTATTTCAAAAGGAAGAGGAAAAAAG
TCGGTATTTCCCAGGCATCCAGAGATTGACATTCGCATCTACTCGATAGA
AATCGTGAGGTTCATTTCATCAGGATGACATTAATAATAAATCATGCAGA
CGGTGATACTTAACGGCGTACAATCTTCTTTCATAGGAACAGCGCCACAC
ACAGGTGTGTACAGGATTCTCCCCAAGTTCACCCGGGGGTCTCGACAGGC
GAGATAAGATATTATATTAGCCCGTACCGGGGGCAAGACTTCCGCGGTGC
TAAGCTGCGTCATCGCGTGTAGGTAATCAAAACCGACGCGTGGGGTCTAC
TCACTCATACTCCGCCAAAGAGAGCCGCTTACGTTGTACCTGATGCAACG
AAGTCGATGTCATCATGCTCCAATCGAACGGTCGTTAGATGAAGACATCA
AAAATGGAATGCTCGGGGAATCTTGTCTCGCTGAACACGATCATAAAAGA
CAAATCATACCCCCCCCCCCCTACTAATTATTATATATTAATAGCTTAGC
TCTATACTATACTGGTATATGATCATGATGATAACCGATTGTTGTACGGT
GGGGAAGGGGGGATAGGTGCGCAAGGCGAGCTGTCGGTCCGGTGTCCTGG
GTGTCCCATCCCGTCGGGCGAGTTGTCATAACGGCCCCGGATGTTCGTGC
GGGTTCTGTGTACCCCGGCAAGGTATCGTGTGTACGCGAATGAATCCAGC
TCAAGGTCGTGCGCGGGAGAAAATGTTCTTCGAATATTCTCCGATGACCG
GCGGTATACTCCTCCACCTGTTTTACCGTGCTTGGATCTATGTGTATTAA
GAAGTACCGTATAGCCAACTCGAATCCGACGCCAACACGCGCGTTACCCC
GGTCGTTCAGCGCGATTAGGACACGTGTAGCTCTACTGTAGAGTGCAAAT
AGGAGTCATTTGACTTGTTTGTTGCGCGCGATTGCGGCCATAGCATAGAC
ACACGGGGAGGCAGCTCGGGGCAAGAAAAGGGTTGTTTCAGGCTCACAAG
CAGGTTACTCACTACCAGGTACTATTAATAATACAATAGCTTCTACAGAT
AGGGAAAGAGAGGGAGGGTTTTGAAAAGATTAGATTTGTCCTTTCGTTGT
AGAAATCCTGCAATGTACCTGAGATCTGTTCCAGATTCCCTCGTAAGCGC
ACTTGATTCGCGATTCAATGGTTCTATGCTTAAGCGTCCAAAACGCCCGA
TACTATCTATATCGTGTAGAGCTTTTCATCATGAAACGAGCTCGGGATTC
CTCGGTTCCGACGGGGGGTGCCCGCTGCAAAATATTTCGACGCACAGCAG
TATCTCTACGTAGTACCCTACTTCTACCGAGTTCCGCCTCCTGAACCTTT
CCACAAACGGGCGTGTTCCCCTGAATGCTGCAGGCGAAAGGAGGTCGGGA
CGCGATCTTCAAGACTTTCACCTTCGCCAACTTCAACGAGGCATTTGCCT
TCATGACCAGAGCCGCCTTAGTCGCGGAACAGGTTAGCAGCGCGTGACTA
GACAGCAGTGCCCGTAAGACTACGATATTTTTTTCTAGACGTAGAATTTC
CGGTTGTTCTCTCGAGGATCCATGGCGGAAGTAATACCTGGCCCCGTGCG
TGGAGCTGGGGTGGTTTTACGGGGTTTTCCTCCTGCGAGACGCGTTAAGT
GTGTGTTCCAACTGTAGCTTCCAGAGAGAAAATGCGTCCATTTCGGCCGA
ATATCTCGCCCGGGGTTTCCTCCTGTAGAGGCACCCAAGTCCGAGTTTTT
TCCCGAGTAGGCGTCCTCTTCAGGTGAAGGGCCTTTCGATGGAGCTCTCC
ACCTCGTAAAGGGTGTGCCCGATTTCGATGGAGCTCTCCACCTCGTAAAG
GGTGTACCCGATTTCGATGGAGCTCTCCACCTCGCAAAGGGTGTACCCGG
TTTCTTGCCGCAACGCAAGCAACGCTGACGCTGACGCGAGCTAAAAAAAC
TACCAGGTACTCCGTTGAGCATTTATCGATGCCGAGCGGTTCCGAACCTC
GTTCGTGCCCGAACACCAAGATTTCAAGGCATCGCTTAGATATCTCGTTA
AAGGGTTTGTATAATAATTTAGAAGTTATGTAAATATTTTGATTTGTTTT
TTTGACTTTGCTCTAGAGGGGTTATACAAGTTCAAGAATAAAATAAAATA
AAATAAAAAATACAGTCACTAGGGCGTAGTATTAATCGTTTTCACGGGAT
AAGTCTACAAGTAGCTCCAATTTCTGGTGAAATGTTCAAATATTTGCCTC
CCTCGTGGATGTAGGGCGCACGAAACGGTTCTTAAGCAGGAGCGGTGGCT
GTCCGCAGATCTATTAACTTTCCCGGCCCTGACATCATTGTGGGTGGTAT
TCGCTTTTCCTCGCCTCGAATCGCCTGTGTTTGTCACAAGCAAGACGTTG
GCGGCGCCCGCTAGTTCACTCCACTTGGCACCCAAGGTCGTGTTTTACTT
GACCCGCCCCCGCGCCCCCGCCCCCGCCCCTCCCCACTGACCAGATGGAC
CATCACCCGGAGTGGTTCAACGTGTACAACAGGGTGGACGTGACGCTCTC
GACGCACGACTTGGGAGGCGTCTCGCGCAAGGACATTACGCTGGCGAGTC
GGTTGGATGACTTCGCCACGCCTGTCGAGCCGAGCCGACCACGTCGCTCT
TGAAGGCCACCTTCCCCCCTTGCCCGTGTGCTGTCGTCCCGTTGATGTTG
ACGCTACGACCCCCTTGGGGCTGCCCTCCCTCAAAACTGCCGTGTGCTCT
TGTTTGAAAGCGGTCGACCGCAATCTGCCGGGGAGTGGTGGGTCTCTACT
TCATACTCTATACTATACTATACTATACTATACTATACCATACTATAGCG
TTGATACAGTATACTATACGTGGGTTTAGATGCGTCGGAGCGGTGCTTTT
ACCGGCAACTAGAATCTTCTCGGGGGAGGGGAAGATAAGCTGCTACGGCC
TCGTTCGTTTTCTTGCTCGACTATGACTGTTGATAGGGGTCCGCCGGACT
CGTGAATTGTCTCTCGTTTCTTCAAAGCTTCTCCCACTTGCTGCTTTATT
TTCATTTTATTTAATTGATCCGTGAACGCTTGCAATTA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1055:146082..153619+

>mRNA_F-serratus_M_contig1055.566.1 ID=mRNA_F-serratus_M_contig1055.566.1|Name=mRNA_F-serratus_M_contig1055.566.1|organism=Fucus serratus male|type=CDS|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig1055:146082..153619+ (Fucus serratus male)
ATGATGACAACAGCAGCAGCTACATCAGTAGCAGCACAAGTTTGTAGAAA
ACTCGTCTCACGATCTACGTTGAATCGATGCATAGCTAGTGTTAGTACAG
CGGCAGCTTCCGCGAGTTTCCGACGGAAAATCGTGCACCCTCTGGACGGA
ACCACCCCGTTCAAGTGTAATAACTTCAGCATCAGCAGCGACGGCGGCAA
ACGCGGTCTCAGGACAGGGAAGAGTCATATCTTCGTCGACAAACCTGAGA
GAGACAGTGCTGTGGCGACGTTAGATGGGTGGTCGGAGATGATGACAACA
GCAGCAGCTACATCAGTAGCAGCACAAGTTTGTAGAAAACTCGTCTCACG
ATCTACGTTGAATCGATGCATAGCTAGTGTTAGTACAGCGGCAGCTTCCG
CGAGTTTCCGACGGAAAATCGTGCACCCTCTGGACGGAACCACCCCGTTC
AAGTGTAATAACTTCAGCATCAGCAGCGACGGCGGCAAACGCGGTCTCAG
GACAGGGAAGAGTCATATCTTCGTCGACAAACCTGAGAGAGACAGTGCTG
TGGCGACGTTAGATGGGTGGTCGGAGGCGAAAGGAGGTCGGGACGCGATC
TTCAAGACTTTCACCTTCGCCAACTTCAACGAGGCATTTGCCTTCATGAC
CAGAGCCGCCTTAGTCGCGGAACAGGCGAAAGGAGGTCGGGACGCGATCT
TCAAGACTTTCACCTTCGCCAACTTCAACGAGGCATTTGCCTTCATGACC
AGAGCCGCCTTAGTCGCGGAACAGATGGACCATCACCCGGAGTGGTTCAA
CGTGTACAACAGGGTGGACGTGACGCTCTCGACGCACGACTTGGGAGGCG
TCTCGCGCAAGGACATTACGCTGGCGAGTCGGTTGGATGACTTCGCCACG
CCTGTCGAGCCGAGCCGACCACGTCGCTCTTGAATGGACCATCACCCGGA
GTGGTTCAACGTGTACAACAGGGTGGACGTGACGCTCTCGACGCACGACT
TGGGAGGCGTCTCGCGCAAGGACATTACGCTGGCGAGTCGGTTGGATGAC
TTCGCCACGCCTGTCGAGCCGAGCCGACCACGTCGCTCTTGA
back to top